Atomistic modeling of enantioselective binding.

This Account focuses on computational studies related to chiral recognition. It begins with a description of potential energy surfaces and the computational tools used to explore such surfaces, describes approximations and assumptions made by researchers computing enantioselective binding, and then explains why differential free energies of binding can be computed so accurately. The review focuses on chiral recognition in chromatography, emphasizing binding and enantiodiscriminating forces responsible for chiral recognition. The Account also describes computational studies of chiral recognition in cyclodextrins, proteins, and synthetic receptors.

[1]  W. C. Still,et al.  Free Energy Calculations in Molecular Design: Predictions by Theory and Reality by Experiment with Enantioselective Podand Ionophores , 1994 .

[2]  Kenny B. Lipkowitz,et al.  Abuses of Molecular Mechanics: Pitfalls to Avoid , 1995 .

[3]  F. Leusen,et al.  Computational chemistry applied to the design of chiral stationary phases for enantiomeric separation , 1989 .

[4]  K. Hult,et al.  A structural basis for enantioselective inhibition of Candida rugosa lipase by long‐chain aliphatic alcohols , 1996, Protein science : a publication of the Protein Society.

[5]  M. Sabio,et al.  A molecular dynamics investigation of chiral discrimination complexes as chiral stationary‐phase models: Methyl N‐(2‐naphthyl)alaninate with N‐(3,5‐dinitrobenzoyl)leucine n‐propylamide , 1991 .

[6]  Kenny B. Lipkowitz,et al.  Dynamic molecular surface areas , 1989 .

[7]  K. Hult,et al.  Molecular modeling of the enantioselectivity in lipase-catalyzed transesterification reactions. , 1998, Biophysical journal.

[8]  Kenny B. Lipkowitz,et al.  Applications of Computational Chemistry to the Study of Cyclodextrins. , 1998, Chemical reviews.

[9]  K. Lipkowitz,et al.  Enantioselective binding of tryptophan by .alpha.-cyclodextrin , 1992 .

[10]  U. Norinder,et al.  The Use of Computer Aided Chemistry to Predict Chiral Separation in Liquid Chromatography , 1987 .

[11]  Kenny B. Lipkowitz,et al.  Detailed experimental and theoretical analysis of chiral discrimination: Enantioselective binding of R/S methyl mandelate by ?-cyclodextrin , 1996 .

[12]  Simple conformation space search protocols for the evaluation of enantioselectivity of lipases. , 1998, Protein engineering.

[13]  M. Sepaniak,et al.  Pulsed-laser photothermal refraction detection in capillary liquid chromatography , 1987 .

[14]  D. DeTar Computation of enzyme-substrate specificity. , 1981, Biochemistry.

[15]  S. Pai,et al.  Maleic acid/ammonium hydroxide buffer system for preconcentration of trace metals from seawater , 1990 .

[16]  R. Kazlauskas,et al.  Molecular Basis for Enantioselectivity of Lipase from Pseudomonas cepacia toward Primary Alcohols. Modeling, Kinetics, and Chemical Modification of Tyr29 to Increase or Decrease Enantioselectivity. , 1999, The Journal of organic chemistry.

[17]  L. Rogers,et al.  Molecular modelling of structural changes which affect chromatographic selectivity in chiral separations. , 1989, Talanta.

[18]  Kenny B. Lipkowitz,et al.  Protocol for determining enantioselective binding of chiral analytes on chiral chromatographic surfaces , 1988 .

[19]  P. Schleyer,et al.  exo,exo-[1,3-Bis(trimethylsilyl)allyl]lithium-N,N,N',N'-tetramethylethylenediamine complex: crystal structure and dynamics in solution , 1992 .

[20]  Peter A. Kollman,et al.  Molecular mechanics studies of enzyme-substrate interactions: the interaction of L- and D-N-acetyltryptophanamide with α-chymotrypsin , 1983 .

[21]  Kenny B. Lipkowitz,et al.  The Principle of Maximum Chiral Discrimination: Chiral Recognition in Permethyl-beta-cyclodextrin. , 1998, The Journal of organic chemistry.

[22]  W. Dean,et al.  Interactions between sarcoplasmic reticulum calcium adenosintriphosphatase and nonionic detergents. , 1981, Biochemistry.

[23]  Angelo Carotti,et al.  LFER and CoMFA studies on optical resolution of α-alkyl α-aryloxy acetic acid methyl esters on DACH-DNB chiral stationary phase , 1995, J. Comput. Aided Mol. Des..

[24]  T. Darden,et al.  Enantioselective binding of 2,2,2-trifluoro-1-(9-anthryl)ethanol on a chiral stationary phase: a theoretical study , 1987 .

[25]  I. Kolossváry Evaluation of the Molecular Configuration Integral in All Degrees of Freedom for the Direct Calculation of Binding Free Energies: Application to the Enantioselective Binding of Amino Acid Derivatives to Synthetic Host Molecules , 1997 .

[26]  K. Lipkowitz,et al.  Computational analysis of chiral recognition in pirkle phases , 1990 .

[27]  P. Carrupt,et al.  Enantiomeric resolution of sulfoxides on a DACH-DNB chiral stationary phase: A quantitative structure-enantioselective retention relationship (QSERR) study , 1993 .