A Collaborative-Filtering-Based Data Collection Strategy for Friedreich’s Ataxia

Friedreich’s ataxia (FRDA) is an inherited neurodegenerative disorder with the prevalence of 2–4 in every 100,000 Caucasian population. Since 2010, the European Friedreich’s Ataxia Consortium for Translational Studies (EFACTS) has endeavored to define and characterize FRDA by recruiting over 940 FRDA patients to provide baseline data in 19 study sites distributed in 9 European countries. It is challenging to collect primary data at EFACTS’ study sites because of physical/psychological difficulties in recruiting new patients and collecting follow-up assessment data. To overcome such challenges, in this paper, we propose a novel data collection strategy for the FRDA baseline data by using the collaborative filtering (CF) approaches. This strategy is motivated by the popularity of the nowadays “Recommendation System” whose central idea is based on the fact that similar patients have similar symptoms on each test item. By doing so, instead of having no data at all, the FRDA researchers would be provided with certain predicted baseline data on patients who cannot attend the assessments for physical/psychological reasons, thereby helping with the data analysis from the researchers’ perspective. It is shown that the CF approaches are capable of predicting baseline data based on the similarity in test items of the patients, where the prediction accuracy is evaluated based on three rating scales selected from the EFACTS database. Experimental results demonstrate the validity and efficiency of the proposed strategy.

[1]  Domonkos Tikk,et al.  Major components of the gravity recommendation system , 2007, SKDD.

[2]  Qing-Long Han,et al.  Finite-Time $H_{\infty}$ State Estimation for Discrete Time-Delayed Genetic Regulatory Networks Under Stochastic Communication Protocols , 2018, IEEE Transactions on Circuits and Systems I: Regular Papers.

[3]  L. Baliko,et al.  Scale for the assessment and rating of ataxia , 2006, Neurology.

[4]  Lei Zou,et al.  Finite-Time State Estimation for Delayed Neural Networks With Redundant Delayed Channels , 2021, IEEE Transactions on Systems, Man, and Cybernetics: Systems.

[5]  Jie Cao,et al.  GLEAM: a graph clustering framework based on potential game optimization for large-scale social networks , 2017, Knowledge and Information Systems.

[6]  S. Perlman,et al.  A phase 3, double-blind, placebo-controlled trial of idebenone in friedreich ataxia. , 2010, Archives of neurology.

[7]  Qing-Long Han,et al.  Security Control for Discrete-Time Stochastic Nonlinear Systems Subject to Deception Attacks , 2018, IEEE Transactions on Systems, Man, and Cybernetics: Systems.

[8]  Min Wu,et al.  State Estimation for Discrete Time-Delayed Genetic Regulatory Networks With Stochastic Noises Under the Round-Robin Protocols , 2018, IEEE Transactions on NanoBioscience.

[9]  Fuad E. Alsaadi,et al.  Finite-Time State Estimation for Recurrent Delayed Neural Networks With Component-Based Event-Triggering Protocol , 2018, IEEE Transactions on Neural Networks and Learning Systems.

[10]  John Riedl,et al.  An algorithmic framework for performing collaborative filtering , 1999, SIGIR '99.

[11]  Qing-Long Han,et al.  A Recursive Approach to Quantized ${H_{\infty}}$ State Estimation for Genetic Regulatory Networks Under Stochastic Communication Protocols , 2019, IEEE Transactions on Neural Networks and Learning Systems.

[12]  Fuad E. Alsaadi,et al.  Dynamic Event-Triggered State Estimation for Discrete-Time Singularly Perturbed Systems With Distributed Time-Delays , 2020, IEEE Transactions on Systems, Man, and Cybernetics: Systems.

[13]  Jie Cao,et al.  CAMAS: A cluster-aware multiagent system for attributed graph clustering , 2017, Inf. Fusion.

[14]  P. Patel,et al.  Friedreich's Ataxia: Autosomal Recessive Disease Caused by an Intronic GAA Triplet Repeat Expansion , 1996, Science.

[15]  Qing-Long Han,et al.  Dissipative control for nonlinear Markovian jump systems with actuator failures and mixed time-delays , 2018, Autom..

[16]  George Karypis,et al.  Item-based top-N recommendation algorithms , 2004, TOIS.

[17]  R. Wilson,et al.  Open‐label pilot study of interferon gamma‐1b in Friedreich ataxia , 2015, Acta neurologica Scandinavica.

[18]  Yun Chen,et al.  Distributed $H_\infty$ Filtering for Switched Stochastic Delayed Systems Over Sensor Networks With Fading Measurements , 2020, IEEE Transactions on Cybernetics.

[19]  Lior Rokach,et al.  Recommender Systems: Introduction and Challenges , 2015, Recommender Systems Handbook.

[20]  Qing-Long Han,et al.  Synchronization Control for a Class of Discrete-Time Dynamical Networks With Packet Dropouts: A Coding–Decoding-Based Approach , 2018, IEEE Transactions on Cybernetics.

[21]  Dipankar Das,et al.  Relation Extraction of Medical Concepts Using Categorization and Sentiment Analysis , 2018, Cognitive Computation.

[22]  Zidong Wang,et al.  $H_{\infty}$ State Estimation for Discrete-Time Nonlinear Singularly Perturbed Complex Networks Under the Round-Robin Protocol , 2019, IEEE Transactions on Neural Networks and Learning Systems.

[23]  Paola Giunti,et al.  Biological and clinical characteristics of the European Friedreich's Ataxia Consortium for Translational Studies (EFACTS) cohort: a cross-sectional analysis of baseline data , 2015, The Lancet Neurology.

[24]  Qing-Long Han,et al.  Event-Based Variance-Constrained ${\mathcal {H}}_{\infty }$ Filtering for Stochastic Parameter Systems Over Sensor Networks With Successive Missing Measurements , 2018, IEEE Transactions on Cybernetics.

[25]  Zidong Wang,et al.  Observer-Based Consensus Control for Discrete-Time Multiagent Systems With Coding–Decoding Communication Protocol , 2019, IEEE Transactions on Cybernetics.

[26]  Qing-Long Han,et al.  Neural-Network-Based Output-Feedback Control Under Round-Robin Scheduling Protocols , 2019, IEEE Transactions on Cybernetics.

[27]  Zibin Zheng,et al.  Collaborative Web Service QoS Prediction via Neighborhood Integrated Matrix Factorization , 2013, IEEE Transactions on Services Computing.

[28]  Yonggang Chen,et al.  Exponential Synchronization for Delayed Dynamical Networks via Intermittent Control: Dealing With Actuator Saturations , 2019, IEEE Transactions on Neural Networks and Learning Systems.

[29]  Lei Zou,et al.  Recursive Filtering for Time-Varying Systems With Random Access Protocol , 2019, IEEE Transactions on Automatic Control.

[30]  David Heckerman,et al.  Empirical Analysis of Predictive Algorithms for Collaborative Filtering , 1998, UAI.

[31]  Zibin Zheng,et al.  QoS-Aware Web Service Recommendation by Collaborative Filtering , 2011, IEEE Transactions on Services Computing.

[32]  P. Friedreich,et al.  Ueber degenerative Atrophie der spinalen Hinterstränge , 2005, Archiv für pathologische Anatomie und Physiologie und für klinische Medicin.

[33]  Nilanjan Dey,et al.  Meta-KANSEI Modeling with Valence-Arousal fMRI Dataset of Brain , 2018, Cognitive Computation.

[34]  Qing-Long Han,et al.  Envelope-constrained H∞ filtering for nonlinear systems with quantization effects: The finite horizon case , 2018, Autom..

[35]  John Riedl,et al.  Item-based collaborative filtering recommendation algorithms , 2001, WWW '01.

[36]  William Shrader,et al.  A0001 in Friedreich ataxia: Biochemical characterization and effects in a clinical trial , 2012, Movement disorders : official journal of the Movement Disorder Society.

[37]  A. Harding Friedreich's ataxia: a clinical and genetic study of 90 families with an analysis of early diagnostic criteria and intrafamilial clustering of clinical features. , 1981, Brain : a journal of neurology.

[38]  Joseph A. Konstan,et al.  Understanding and improving automated collaborative filtering systems , 2000 .

[39]  D. Lynch,et al.  Challenges ahead for trials in Friedreich’s ataxia , 2016, The Lancet Neurology.

[40]  D. Timmann,et al.  Progression characteristics of the European Friedreich’s Ataxia Consortium for Translational Studies (EFACTS): a 2 year cohort study , 2016, The Lancet Neurology.

[41]  Maozhen Li,et al.  Distributed Set-Membership Filtering for Multirate Systems Under the Round-Robin Scheduling Over Sensor Networks , 2020, IEEE Transactions on Cybernetics.

[42]  Jie Cao,et al.  Weighted modularity optimization for crisp and fuzzy community detection in large-scale networks , 2016 .

[43]  Qing-Long Han,et al.  Consensus control of stochastic multi-agent systems: a survey , 2017, Science China Information Sciences.

[44]  Na-Na Guan,et al.  A Hybrid Interpolation Weighted Collaborative Filtering Method for Anti-cancer Drug Response Prediction , 2018, Front. Pharmacol..

[45]  Qing-Long Han,et al.  Regional Stabilization for Discrete Time-Delay Systems With Actuator Saturations via A Delay-Dependent Polytopic Approach , 2019, IEEE Transactions on Automatic Control.

[46]  K. Fischbeck,et al.  Neurological effects of high-dose idebenone in patients with Friedreich's ataxia: a randomised, placebo-controlled trial , 2007, The Lancet Neurology.

[47]  Yanchun Zhang,et al.  Shilling attack detection utilizing semi-supervised learning method for collaborative recommender system , 2013, World Wide Web.

[48]  Mumtaz Ali,et al.  A Novel Clustering Algorithm in a Neutrosophic Recommender System for Medical Diagnosis , 2017, Cognitive Computation.