HIV-1 Nef Binds PACS-2 to Assemble a Multikinase Cascade That Triggers Major Histocompatibility Complex Class I (MHC-I) Down-regulation

Human immunodeficiency virus, type 1, negative factor (Nef) initiates down-regulation of cell-surface major histocompatibility complex-I (MHC-I) by assembling an Src family kinase (SFK)-ZAP70/Syk-phosphoinositide 3-kinase (PI3K) cascade through the sequential actions of two sites, Nef EEEE65 and PXXP75. The internalized MHC-I molecules are then sequestered in endosomal compartments by a process requiring Nef Met20. How Nef assembles the multikinase cascade to trigger the MHC-I down-regulation pathway is unknown. Here we report that EEEE65-dependent binding to the sorting protein PACS-2 targets Nef to the paranuclear region, enabling PXXP75 to bind and activate a trans-Golgi network (TGN)-localized SFK. This SFK then phosphorylates ZAP-70 to recruit class I PI3K by interaction with the p85 C-terminal Src homology 2 domain. Using splenocytes and embryonic fibroblasts from PACS-2-/- mice, we confirm genetically that Nef requires PACS-2 to localize to the paranuclear region and assemble the multikinase cascade. Moreover, genetic loss of PACS-2 or inhibition of class I PI3K prevents Nef-mediated MHC-I down-regulation, demonstrating that short interfering RNA knockdown of PACS-2 phenocopies the gene knock-out. This PACS-2-dependent targeting pathway is not restricted to Nef, because PACS-2 is also required for trafficking of an endocytosed cation-independent mannose 6-phosphate receptor reporter from early endosomes to the TGN. Together, these results demonstrate PACS-2 is required for Nef action and sorting of itinerant membrane cargo in the TGN/endosomal system.

[1]  C. Barnstable,et al.  Production of monoclonal antibodies to group A erythrocytes, HLA and other human cell surface antigens-new tools for genetic analysis , 1978, Cell.

[2]  D. Cowburn,et al.  A single amino acid in the SH3 domain of Hck determines its high affinity and specificity in binding to HIV‐1 Nef protein. , 1995, The EMBO journal.

[3]  M. Greenberg,et al.  The SH3 domain‐binding surface and an acidic motif in HIV‐1 Nef regulate trafficking of class I MHC complexes , 1998, The EMBO journal.

[4]  M. Mumby,et al.  Regulation of Endosome Sorting by a Specific PP2A Isoform , 1998, The Journal of cell biology.

[5]  L. Wan,et al.  PACS-1 Defines a Novel Gene Family of Cytosolic Sorting Proteins Required for trans-Golgi Network Localization , 1998, Cell.

[6]  J. Marsh,et al.  The numerous effector functions of Nef. , 1999, Archives of biochemistry and biophysics.

[7]  Yen-Liang Chen,et al.  Nef-Induced CD4 and Major Histocompatibility Complex Class I (MHC-I) Down-Regulation Are Governed by Distinct Determinants: N-Terminal Alpha Helix and Proline Repeat of Nef Selectively Regulate MHC-I Trafficking , 1999, Journal of Virology.

[8]  J. Bonifacino,et al.  Basolateral Sorting of Furin in MDCK Cells Requires a Phenylalanine-Isoleucine Motif Together with an Acidic Amino Acid Cluster , 1999, Molecular and Cellular Biology.

[9]  D. Olive,et al.  Human Immunodeficiency Virus Type 1 Nef Protein Sensitizes CD4+ T Lymphoid Cells to Apoptosis via Functional Upregulation of the CD95/CD95 Ligand Pathway , 1999 .

[10]  I. Maridonneau-Parini,et al.  Lack of Palmitoylation Redirects p59Hck from the Plasma Membrane to p61Hck-positive Lysosomes* , 2000, The Journal of Biological Chemistry.

[11]  D. Trono,et al.  HIV-1 Nef protein binds to the cellular protein PACS-1 to downregulate class I major histocompatibility complexes , 2000, Nature Cell Biology.

[12]  S. Arold,et al.  Nef-Induced Major Histocompatibility Complex Class I Down-Regulation Is Functionally Dissociated from Its Virion Incorporation, Enhancement of Viral Infectivity, and CD4 Down-Regulation , 2000, Journal of Virology.

[13]  F. Gu,et al.  PACS‐1 binding to adaptors is required for acidic cluster motif‐mediated protein traffic , 2001, The EMBO journal.

[14]  T. Smithgall,et al.  SH3-dependent stimulation of Src-family kinase autophosphorylation without tail release from the SH2 domain in vivo , 2002, Nature Structural Biology.

[15]  R. Baron,et al.  Molecular complexes that contain both c-Cbl and c-Src associate with Golgi membranes. , 2002, European journal of cell biology.

[16]  G. Thomas,et al.  HIV-1 Nef Downregulates MHC-I by a PACS-1- and PI3K-Regulated ARF6 Endocytic Pathway , 2002, Cell.

[17]  K. Collins,et al.  Nef-Mediated Disruption of HLA-A2 Transport to the Cell Surface in T Cells , 2003, Journal of Virology.

[18]  T. Swigut,et al.  Signaling but not trafficking function of HIV-1 protein Nef is essential for Nef-induced defects in human intrathymic T-cell development. , 2003, Blood.

[19]  M. Stevenson HIV-1 pathogenesis , 2003, Nature Medicine.

[20]  P. Finan,et al.  Therapeutic potential of phosphoinositide 3-kinase inhibitors. , 2003, Chemistry & biology.

[21]  L. Wan,et al.  Role of PACS-1 in Trafficking of Human Cytomegalovirus Glycoprotein B and Virus Production , 2003, Journal of Virology.

[22]  P. Benaroch,et al.  Human immunodeficiency virus-1 Nef expression induces intracellular accumulation of multivesicular bodies and major histocompatibility complex class II complexes: potential role of phosphatidylinositol 3-kinase. , 2003, Molecular biology of the cell.

[23]  D. Trono,et al.  Hide, shield and strike back: how HIV-infected cells avoid immune eradication , 2003, Nature Reviews Immunology.

[24]  F. Wendler,et al.  AP‐1 recruitment to VAMP4 is modulated by phosphorylation‐dependent binding of PACS‐1 , 2003, EMBO reports.

[25]  F. Gu,et al.  The phosphorylation state of an autoregulatory domain controls PACS‐1‐directed protein traffic , 2003, The EMBO journal.

[26]  Tracey M. Filzen,et al.  HIV-1 Nef disrupts MHC-I trafficking by recruiting AP-1 to the MHC-I cytoplasmic tail , 2004, The Journal of cell biology.

[27]  Judith Klumperman,et al.  Sorting Nexin-1 Mediates Tubular Endosome-to-TGN Transport through Coincidence Sensing of High- Curvature Membranes and 3-Phosphoinositides , 2004, Current Biology.

[28]  T. Kirchhausen,et al.  HIV Nef-mediated major histocompatibility complex class I down-modulation is independent of Arf6 activity. , 2003, Molecular biology of the cell.

[29]  M. Seaman Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer , 2004, The Journal of cell biology.

[30]  C. Arighi,et al.  Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor , 2004, The Journal of cell biology.

[31]  P. De,et al.  Molecular Basis for a Direct Interaction between the Syk Protein-tyrosine Kinase and Phosphoinositide 3-Kinase* , 2005, Journal of Biological Chemistry.

[32]  Marc Vidal,et al.  Systematic analysis of genes required for synapse structure and function , 2005, Nature.

[33]  H. Zentgraf,et al.  Phosphorylation by casein kinase 2 induces PACS‐1 binding of nephrocystin and targeting to cilia , 2005, The EMBO journal.

[34]  John R Yates,et al.  Targeted Proteomic Analysis of 14-3-3ς, a p53 Effector Commonly Silenced in Cancer*S , 2005, Molecular & Cellular Proteomics.

[35]  B. Schermer,et al.  Trafficking of TRPP2 by PACS proteins represents a novel mechanism of ion channel regulation , 2005, The EMBO journal.

[36]  John Guatelli,et al.  Nef-induced Alteration of the Early/Recycling Endosomal Compartment Correlates with Enhancement of HIV-1 Infectivity* , 2005, Journal of Biological Chemistry.

[37]  S. Jameel,et al.  Biology of the HIV Nef protein. , 2005, The Indian journal of medical research.

[38]  L. Wan,et al.  PACS‐2 controls endoplasmic reticulum–mitochondria communication and Bid‐mediated apoptosis , 2005, The EMBO journal.

[39]  G. Thomas,et al.  Identification of a pH Sensor in the Furin Propeptide That Regulates Enzyme Activation* , 2006, Journal of Biological Chemistry.

[40]  Robbie Loewith,et al.  A Pharmacological Map of the PI3-K Family Defines a Role for p110α in Insulin Signaling , 2006, Cell.

[41]  L. Wain,et al.  Chimpanzee Reservoirs of Pandemic and Nonpandemic HIV-1 , 2006, Science.

[42]  S. Benichou,et al.  Modulation of Cellular Protein Trafficking by Human Immunodeficiency Virus Type 1 Nef: Role of the Acidic Residue in the ExxxLL Motif , 2006, Journal of Virology.

[43]  J. Bonifacino,et al.  Retrograde transport from endosomes to the trans-Golgi network , 2006, Nature Reviews Molecular Cell Biology.

[44]  G. Thomas,et al.  A PACS‐1, GGA3 and CK2 complex regulates CI‐MPR trafficking , 2006, The EMBO journal.

[45]  R. Means,et al.  Kaposi sarcoma herpesvirus K5 removes CD31/PECAM from endothelial cells. , 2006, Blood.

[46]  T. Smithgall,et al.  HIV-1 Nef Selectively Activates Src Family Kinases Hck, Lyn, and c-Src through Direct SH3 Domain Interaction* , 2006, Journal of Biological Chemistry.

[47]  A. Dautry‐Varsat,et al.  Human immunodeficiency virus type-1 infection impairs the formation of the immunological synapse. , 2006, Immunity.

[48]  F. Cosset,et al.  An Acidic Cluster of the Cytoplasmic Tail of the RD114 Virus Glycoprotein Controls Assembly of Retroviral Envelopes , 2007, Traffic.

[49]  J. Garcia,et al.  Role of Nef in HIV-1 replication and pathogenesis. , 2007, Advances in pharmacology.

[50]  Claire Hivroz,et al.  ZAP‐70 kinase regulates HIV cell‐to‐cell spread and virological synapse formation , 2007, The EMBO journal.

[51]  J. Garcia,et al.  CD4 and MHC-I downregulation are conserved in primary HIV-1 Nef alleles from brain and lymphoid tissues, but Pak2 activation is highly variable. , 2007, Virology.

[52]  P. Lehner,et al.  HIV-1 Nef-induced down-regulation of MHC class I requires AP-1 and clathrin but not PACS-1 and is impeded by AP-2. , 2007, Molecular biology of the cell.

[53]  K. Shokat,et al.  HIV-1 Nef assembles a Src family kinase-ZAP-70/Syk-PI3K cascade to downregulate cell-surface MHC-I. , 2007, Cell host & microbe.

[54]  G. Bu,et al.  The γ/σ1 and α/σ2 Hemicomplexes of Clathrin Adaptors AP-1 and AP-2 Harbor the Dileucine Recognition Site , 2007 .

[55]  J. Bonifacino,et al.  The retromer complex and clathrin define an early endosomal retrograde exit site , 2007, Journal of Cell Science.

[56]  O. W. Lindwasser,et al.  Downregulation of CD4 by Human Immunodeficiency Virus Type 1 Nef Is Dependent on Clathrin and Involves Direct Interaction of Nef with the AP2 Clathrin Adaptor , 2007, Journal of Virology.

[57]  H. Harada,et al.  Interaction between Hck and HIV-1 Nef negatively regulates cell surface expression of M-CSF receptor. , 2008, Blood.