论文信息 - The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results

The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results

Sharing in silico experiments is essential for the advance of research in computational biology. Consequently, the COMBINE archive was designed as a digital container format. It eases the management of files related to a modelling result, fosters collaboration, and ultimately enables the exchange of reproducible simulation studies. However, manual handling of COMBINE archives is tedious and error prone. We therefore developed the CombineArchiveWeb application to support scientists in promoting and publishing their research by means of creating, exploring, modifying, and sharing archives. All files are equipped with meta data and can be distributed over the Web through shareable workspaces.

[1] Olaf Wolkenhauer,et al. Proteolysis of beta-galactosidase following SigmaB activation in Bacillus subtilis. , 2012, Molecular bioSystems.

[2] Olaf Wolkenhauer,et al. Possibilities for Integrating Model-related Data in Computational Biology , 2013 .

[3] Peter J. Hunter,et al. The CellML Model Repository , 2008, Bioinform..

[4] Nicolas Le Novère,et al. COMBINE archive: One File To Share Them All , 2014, ArXiv.

[5] Chris J. Myers,et al. Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) , 2011, Standards in Genomic Sciences.

[6] Melanie I. Stefan,et al. BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models , 2010, BMC Systems Biology.

[7] Gary R. Mirams,et al. High-throughput functional curation of cellular electrophysiology models. , 2011, Progress in biophysics and molecular biology.