Molecular understanding of a potential functional link between antimicrobial and amyloid peptides.

Antimicrobial and amyloid peptides do not share common sequences, typical secondary structures, or normal biological activity but both the classes of peptides exhibit membrane-disruption ability to induce cell toxicity. Different membrane-disruption mechanisms have been proposed for antimicrobial and amyloid peptides, individually, some of which are not exclusive to either peptide type, implying that certain common principles may govern the folding and functions of different cytolytic peptides and associated membrane disruption mechanisms. Particularly, some antimicrobial and amyloid peptides have been identified to have dual complementary amyloid and antimicrobial properties, suggesting a potential functional link between amyloid and antimicrobial peptides. Given that some similar structural and membrane-disruption characteristics exist between the two classes of peptides, this review summarizes major findings, recent advances, and future challenges related to antimicrobial and amyloid peptides and strives to illustrate the similarities, differences, and relationships in the sequences, structures, and membrane interaction modes between amyloid and antimicrobial peptides, with a special focus on direct interactions of the peptides with the membranes. We hope that this review will stimulate further research at the interface of antimicrobial and amyloid peptides - which has been studied less intensively than either type of peptides - to decipher a possible link between both amyloid pathology and antimicrobial activity, which can guide drug design and peptide engineering to influence peptide-membrane interactions important in human health and diseases.

[1]  J. Johansson,et al.  Structure and properties of surfactant protein C. , 1998, Biochimica et biophysica acta.

[2]  S. White,et al.  Determining the membrane topology of peptides by fluorescence quenching. , 2000, Biochemistry.

[3]  M J Ball,et al.  beta-Amyloid-(1-42) is a major component of cerebrovascular amyloid deposits: implications for the pathology of Alzheimer disease. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[4]  T. Ganz,et al.  The NMR structure of human beta-defensin-2 reveals a novel alpha-helical segment. , 2001, Biochemistry.

[5]  Sampling the self-assembly pathways of KFFE hexamers. , 2004, Biophysical journal.

[6]  Maarten F. M. Engel,et al.  Islet amyloid polypeptide‐induced membrane leakage involves uptake of lipids by forming amyloid fibers , 2004, FEBS letters.

[7]  J. McLaurin,et al.  Characterization of the interactions of Alzheimer beta-amyloid peptides with phospholipid membranes. , 1997, European journal of biochemistry.

[8]  Jie Zheng,et al.  Non-selective ion channel activity of polymorphic human islet amyloid polypeptide (amylin) double channels. , 2014, Physical chemistry chemical physics : PCCP.

[9]  P. Kinnunen,et al.  Amyloid-type fiber formation in control of enzyme action: interfacial activation of phospholipase A2. , 2008, Biophysical journal.

[10]  Andreas Hoenger,et al.  De novo designed peptide-based amyloid fibrils , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[11]  A. Schmidtchen,et al.  End-Tagging of Ultra-Short Antimicrobial Peptides by W/F Stretches to Facilitate Bacterial Killing , 2009, PloS one.

[12]  J. Straub,et al.  Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires , 2010, Proceedings of the National Academy of Sciences.

[13]  R. Nussinov,et al.  Molecular dynamics simulations of Alzheimer Abeta40 elongation and lateral association. , 2008, Frontiers in bioscience : a journal and virtual library.

[14]  Michel Goedert,et al.  Alpha-synuclein and neurodegenerative diseases , 2001, Nature Reviews Neuroscience.

[15]  T. Hauß,et al.  Neutron diffraction reveals sequence‐specific membrane insertion of pre‐fibrillar islet amyloid polypeptide and inhibition by rifampicin , 2005, FEBS letters.

[16]  Martin Malmsten,et al.  Interaction between amphiphilic peptides and phospholipid membranes , 2010 .

[17]  L. Serrano,et al.  Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins , 2004, Nature Biotechnology.

[18]  R. Kaptein,et al.  NMR structures of phospholipase A2 reveal conformational changes during interfacial activation , 1995, Nature Structural Biology.

[19]  G. Schneider,et al.  Designing antimicrobial peptides: form follows function , 2011, Nature Reviews Drug Discovery.

[20]  M. B. Banaszak Holl,et al.  Membrane thinning due to antimicrobial peptide binding: an atomic force microscopy study of MSI-78 in lipid bilayers. , 2005, Biophysical journal.

[21]  Jie Zheng,et al.  Structural determination of Abeta25-35 micelles by molecular dynamics simulations. , 2010, Biophysical journal.

[22]  J. Brender,et al.  Association of highly compact type II diabetes related islet amyloid polypeptide intermediate species at physiological temperature revealed by diffusion NMR spectroscopy. , 2009, Journal of the American Chemical Society.

[23]  Feimeng Zhou,et al.  Molecular interactions of Alzheimer amyloid-β oligomers with neutral and negatively charged lipid bilayers. , 2013, Physical chemistry chemical physics : PCCP.

[24]  K. Kjaer,et al.  Lipid membrane templates the ordering and induces the fibrillogenesis of Alzheimer's disease amyloid‐β peptide , 2008, Proteins.

[25]  Hao Chen,et al.  Identification of amyloid fibril-forming segments based on structure and residue-based statistical potential , 2007, Bioinform..

[26]  S H White,et al.  Folding of beta-sheet membrane proteins: a hydrophobic hexapeptide model. , 1998, Journal of molecular biology.

[27]  S. C. Kim,et al.  Solution structure of an antimicrobial peptide buforin II , 1996, FEBS letters.

[28]  D Peter Tieleman,et al.  Interactions of the designed antimicrobial peptide MB21 and truncated dermaseptin S3 with lipid bilayers: molecular-dynamics simulations. , 2003, The Biochemical journal.

[29]  Ruth Nussinov,et al.  β-Barrel topology of Alzheimer's β-amyloid ion channels. , 2010, Journal of molecular biology.

[30]  S. Daffre,et al.  The solution structure of gomesin, an antimicrobial cysteine-rich peptide from the spider. , 2002, European journal of biochemistry.

[31]  M. Pazgier,et al.  Human α-Defensin 6 Promotes Mucosal Innate Immunity Through Self-Assembled Peptide Nanonets , 2012, Science.

[32]  K. Mackenzie Folding and Stability of α-Helical Integral Membrane Proteins , 2006 .

[33]  J T Finch,et al.  Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[34]  M S Sansom,et al.  Simulation studies of the interaction of antimicrobial peptides and lipid bilayers. , 1999, Biochimica et biophysica acta.

[35]  K. Brogden Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria? , 2005, Nature Reviews Microbiology.

[36]  Pawel Sikorski,et al.  Molecular basis for amyloid fibril formation and stability. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Niels Chr Nielsen,et al.  Pardaxin permeabilizes vesicles more efficiently by pore formation than by disruption. , 2010, Biophysical journal.

[38]  Christopher M. Dobson,et al.  Structural biology: Prying into prions , 2005, Nature.

[39]  D. Baker,et al.  The 3D profile method for identifying fibril-forming segments of proteins. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[40]  S H White,et al.  CD spectra of indolicidin antimicrobial peptides suggest turns, not polyproline helix. , 1999, Biochemistry.

[41]  B. Mattei,et al.  Structure-activity relationship of the antimicrobial peptide gomesin: the role of peptide hydrophobicity in its interaction with model membranes. , 2014, Langmuir : the ACS journal of surfaces and colloids.

[42]  William C Wimley,et al.  Describing the mechanism of antimicrobial peptide action with the interfacial activity model. , 2010, ACS chemical biology.

[43]  Guizhao Liang,et al.  Structural polymorphism of human islet amyloid polypeptide (hIAPP) oligomers highlights the importance of interfacial residue interactions. , 2011, Biomacromolecules.

[44]  Gerhard Hummer,et al.  Structure and Dynamics of Parallel β-Sheets, Hydrophobic Core, and Loops in Alzheimer's Aβ Fibrils , 2007 .

[45]  Martin B Ulmschneider,et al.  Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques. , 2006, Biophysical journal.

[46]  R. Nussinov,et al.  Antimicrobial protegrin-1 forms ion channels: molecular dynamic simulation, atomic force microscopy, and electrical conductance studies. , 2010, Biophysical journal.

[47]  R. Nussinov,et al.  Sequence and structure analysis of parallel beta helices: implication for constructing amyloid structural models. , 2006, Structure.

[48]  Gianluigi Veglia,et al.  Structure and Orientation of Pardaxin Determined by NMR Experiments in Model Membranes* , 2004, Journal of Biological Chemistry.

[49]  K. Jacobson,et al.  Small molecule blockers of the Alzheimer Aβ calcium channel potently protect neurons from Aβ cytotoxicity , 2009, Proceedings of the National Academy of Sciences.

[50]  Ian Parker,et al.  Calcium Dysregulation and Membrane Disruption as a Ubiquitous Neurotoxic Mechanism of Soluble Amyloid Oligomers*♦ , 2005, Journal of Biological Chemistry.

[51]  Zhe Wang,et al.  APD: the Antimicrobial Peptide Database , 2004, Nucleic Acids Res..

[52]  Guanghong Wei,et al.  Lipid Interaction and Membrane Perturbation of Human Islet Amyloid Polypeptide Monomer and Dimer by Molecular Dynamics Simulations , 2012, PloS one.

[53]  R. Hancock,et al.  Clinical development of cationic antimicrobial peptides: from natural to novel antibiotics. , 2002, Current drug targets. Infectious disorders.

[54]  M. Chapman,et al.  Bacterial curli protein promotes the conversion of PAP248-286 into the amyloid SEVI: cross-seeding of dissimilar amyloid sequences , 2013, PeerJ.

[55]  Justin A. Lemkul,et al.  Lipid composition influences the release of Alzheimer's amyloid β‐peptide from membranes , 2011, Protein science : a publication of the Protein Society.

[56]  Gerhard Hummer,et al.  Molecular dynamics simulations of Alzheimer's β-amyloid protofilaments , 2005 .

[57]  A. Colell,et al.  Mitochondria, cholesterol and amyloid β peptide: a dangerous trio in Alzheimer disease , 2009, Journal of bioenergetics and biomembranes.

[58]  K. Kuroda,et al.  Investigations of the interactions between synthetic antimicrobial polymers and substrate-supported lipid bilayers using sum frequency generation vibrational spectroscopy. , 2011, Analytical chemistry.

[59]  B. Kagan,et al.  Channel formation by serum amyloid A: a potential mechanism for amyloid pathogenesis and host defense , 2002, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

[60]  Guangshun Wang,et al.  Structures of Human Host Defense Cathelicidin LL-37 and Its Smallest Antimicrobial Peptide KR-12 in Lipid Micelles* , 2008, Journal of Biological Chemistry.

[61]  R. Nussinov,et al.  Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL. , 2003, Biophysical journal.

[62]  Kai Hilpert,et al.  High-throughput generation of small antibacterial peptides with improved activity , 2005, Nature Biotechnology.

[63]  D. Hamada,et al.  Binding of islet amyloid polypeptide to supported lipid bilayers and amyloid aggregation at the membranes. , 2012, Biochemistry.

[64]  Constance Auvynet,et al.  Structural requirements for antimicrobial versus chemoattractant activities for dermaseptin S9 , 2008, The FEBS journal.

[65]  B. Kagan,et al.  Pore Formation by the Cytotoxic Islet Amyloid Peptide Amylin (*) , 1996, The Journal of Biological Chemistry.

[66]  J. Brender,et al.  Amyloid fiber formation and membrane disruption are separate processes localized in two distinct regions of IAPP, the type-2-diabetes-related peptide. , 2008, Journal of the American Chemical Society.

[67]  S. Ludtke,et al.  Membrane thinning caused by magainin 2. , 1995, Biochemistry.

[68]  M. Palma,et al.  New insight into the mechanism of action of wasp mastoparan peptides: lytic activity and clustering observed with giant vesicles. , 2011, Langmuir : the ACS journal of surfaces and colloids.

[69]  Gernot Guigas,et al.  Size-dependent diffusion of membrane inclusions. , 2006, Biophysical journal.

[70]  Xia Li,et al.  APD2: the updated antimicrobial peptide database and its application in peptide design , 2008, Nucleic Acids Res..

[71]  Artem Cherkasov,et al.  QSAR modeling and computer‐aided design of antimicrobial peptides , 2008, Journal of peptide science : an official publication of the European Peptide Society.

[72]  Maarten F. M. Engel,et al.  Islet amyloid polypeptide inserts into phospholipid monolayers as monomer. , 2006, Journal of molecular biology.

[73]  T. Shirasawa,et al.  Verification of the turn at positions 22 and 23 of the beta-amyloid fibrils with Italian mutation using solid-state NMR. , 2005, Bioorganic & medicinal chemistry.

[74]  Ayyalusamy Ramamoorthy,et al.  LL-37, the only human member of the cathelicidin family of antimicrobial peptides. , 2006, Biochimica et biophysica acta.

[75]  Chul Kim,et al.  Pore structure, thinning effect, and lateral diffusive dynamics of oriented lipid membranes interacting with antimicrobial peptide protegrin-1: 31P and 2H solid-state NMR study. , 2008, The journal of physical chemistry. B.

[76]  J McLaurin,et al.  Cholesterol, a modulator of membrane-associated Abeta-fibrillogenesis and neurotoxicity. , 2001, Journal of molecular biology.

[77]  R. Epand,et al.  Oblique membrane insertion of viral fusion peptide probed by neutron diffraction. , 2000, Biochemistry.

[78]  R. B. Merrifield,et al.  Solid-phase synthesis of cecropin A and related peptides. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[79]  C. Dobson,et al.  Rational design of aggregation-resistant bioactive peptides: reengineering human calcitonin. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[80]  Zhan Chen,et al.  Real-time structural investigation of a lipid bilayer during its interaction with melittin using sum frequency generation vibrational spectroscopy. , 2007, Biophysical journal.

[81]  M. Zasloff Antimicrobial peptides of multicellular organisms , 2002, Nature.

[82]  A. Miranker,et al.  Common mechanism unites membrane poration by amyloid and antimicrobial peptides , 2013, Proceedings of the National Academy of Sciences.

[83]  L. Sarkisov,et al.  Interactions of phospholipid bilayers with several classes of amphiphilic alpha-helical peptides: insights from coarse-grained molecular dynamics simulations. , 2010, The journal of physical chemistry. B.

[84]  Fabrizio Chiti,et al.  Sequence and structural determinants of amyloid fibril formation. , 2006, Accounts of chemical research.

[85]  Ruth Nussinov,et al.  Models of beta-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process. , 2007, Biophysical journal.

[86]  J. Sipe,et al.  Human serum amyloid A protein. Complete amino acid sequence of a new variant. , 1992, The Biochemical journal.

[87]  R. Nussinov,et al.  K3 fragment of amyloidogenic beta(2)-microglobulin forms ion channels: implication for dialysis related amyloidosis. , 2009, Journal of the American Chemical Society.

[88]  R. Epand,et al.  Relationship of membrane curvature to the formation of pores by magainin 2. , 1998, Biochemistry.

[89]  Jie Zheng,et al.  Polymorphic Structures of Alzheimer's β-Amyloid Globulomers , 2011, PloS one.

[90]  T. Mashimo,et al.  Antimicrobial activity of a 13 amino acid tryptophan‐rich peptide derived from a putative porcine precursor protein of a novel family of antibacterial peptides , 1996, FEBS letters.

[91]  A. Schmidtchen,et al.  Effect of peptide length on the interaction between consensus peptides and DOPC/DOPA bilayers. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[92]  J. Shea,et al.  New insights into the mechanism of Alzheimer amyloid-beta fibrillogenesis inhibition by N-methylated peptides. , 2007, Biophysical journal.

[93]  C. Betsholtz,et al.  Islet amyloid polypeptide: pinpointing amino acid residues linked to amyloid fibril formation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[94]  A. Schmidtchen,et al.  Effects of topology, length, and charge on the activity of a kininogen-derived peptide on lipid membranes and bacteria. , 2007, Biochimica et biophysica acta.

[95]  H. Stanley,et al.  Solvent and mutation effects on the nucleation of amyloid beta-protein folding. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[96]  Ehud Gazit,et al.  A possible role for π‐stacking in the self‐assembly of amyloid fibrils , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[97]  Hai Lin,et al.  Amyloid ion channels: a common structural link for protein-misfolding disease. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[98]  D. Raleigh,et al.  Analysis of amylin cleavage products provides new insights into the amyloidogenic region of human amylin. , 1999, Journal of molecular biology.

[99]  Ruth Nussinov,et al.  Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: relevance to the ion channel mechanism of AD pathology. , 2012, The journal of physical chemistry. B.

[100]  Tatsuo Yamada,et al.  Eight-residue Aβ peptides inhibit the aggregation and enzymatic activity of Aβ42 , 2004, Regulatory Peptides.

[101]  R. Epand,et al.  Probing the "charge cluster mechanism" in amphipathic helical cationic antimicrobial peptides. , 2010, Biochemistry.

[102]  C. Pace,et al.  A helix propensity scale based on experimental studies of peptides and proteins. , 1998, Biophysical journal.

[103]  Ruth Nussinov,et al.  Probing ion channel activity of human islet amyloid polypeptide (amylin). , 2012, Biochimica et biophysica acta.

[104]  D. Eliezer Amyloid Ion Channels: A Porous Argument or a Thin Excuse? , 2006, The Journal of general physiology.

[105]  F. Stevens Hypothetical structure of human serum amyloid A protein , 2004, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

[106]  Zhan Chen,et al.  SFG studies on interactions between antimicrobial peptides and supported lipid bilayers. , 2006, Biochimica et biophysica acta.

[107]  Richard D. Leapman,et al.  Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils , 2008, Proceedings of the National Academy of Sciences.

[108]  Mei Hong,et al.  Solid-State NMR Studies of the Structure, Dynamics, and Assembly of β-Sheet Membrane Peptides and α-Helical Membrane Proteins with Antibiotic Activities , 2006 .

[109]  Y. Ishii,et al.  Capturing intermediate structures of Alzheimer's β-amyloid, Aβ(1-40), by solid-state NMR spectroscopy , 2005 .

[110]  Ayyalusamy Ramamoorthy,et al.  Solid-state NMR investigation of the membrane-disrupting mechanism of antimicrobial peptides MSI-78 and MSI-594 derived from magainin 2 and melittin. , 2006, Biophysical journal.

[111]  D. Otzen,et al.  Amyloid structure – one but not the same: the many levels of fibrillar polymorphism , 2010, The FEBS journal.

[112]  Wayne L. Smith,et al.  Indolicidin, a novel bactericidal tridecapeptide amide from neutrophils. , 1992, The Journal of biological chemistry.

[113]  Ka Yee C. Lee,et al.  Insertion of Alzheimer’s Aβ40 Peptide into Lipid Monolayers , 2004 .

[114]  G. Cooper Amylin compared with calcitonin gene-related peptide: structure, biology, and relevance to metabolic disease. , 1994, Endocrine reviews.

[115]  K. Iwata,et al.  3D structure of amyloid protofilaments of β2-microglobulin fragment probed by solid-state NMR , 2006, Proceedings of the National Academy of Sciences.

[116]  G. Glenner,et al.  Amyloid fibrils formed from a segment of the pancreatic islet amyloid protein. , 1988, Biochemical and biophysical research communications.

[117]  R. Hancock,et al.  Cationic peptides: a new source of antibiotics. , 1998, Trends in biotechnology.

[118]  Ehud Gazit,et al.  Analysis of the Minimal Amyloid-forming Fragment of the Islet Amyloid Polypeptide , 2001, The Journal of Biological Chemistry.

[119]  C. Zeng,et al.  Cellular membrane disruption by amyloid fibrils involved intermolecular disulfide cross-linking. , 2009, Biochemistry.

[120]  S H White,et al.  Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin. , 1999, Journal of molecular biology.

[121]  Joan-Emma Shea,et al.  Human islet amyloid polypeptide monomers form ordered beta-hairpins: a possible direct amyloidogenic precursor. , 2009, Journal of the American Chemical Society.

[122]  B. Bechinger,et al.  The structure, dynamics and orientation of antimicrobial peptides in membranes by multidimensional solid-state NMR spectroscopy. , 1999, Biochimica et biophysica acta.

[123]  P. Kinnunen,et al.  Binding of amphipathic alpha-helical antimicrobial peptides to lipid membranes: lessons from temporins B and L. , 2009, Biochimica et biophysica acta.

[124]  L. Kiessling,et al.  A Strategy for Designing Inhibitors of β-Amyloid Toxicity* , 1996, The Journal of Biological Chemistry.

[125]  T. Zako,et al.  Amyloid oligomers: formation and toxicity of Aβ oligomers , 2010, The FEBS journal.

[126]  Patrick Walsh,et al.  Differences between amyloid-β aggregation in solution and on the membrane: insights into elucidation of the mechanistic details of Alzheimer's disease. , 2014, Chemical Society reviews.

[127]  C. Vágvölgyi,et al.  The History of Alamethicin: A Review of the Most Extensively Studied Peptaibol , 2007, Chemistry & biodiversity.

[128]  S. Becker,et al.  Molecular-level secondary structure, polymorphism, and dynamics of full-length alpha-synuclein fibrils studied by solid-state NMR. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[129]  G. Molle,et al.  Antibacterial activity and pore-forming properties of ceratotoxins: a mechanism of action based on the barrel stave model. , 2004, Biochimica et biophysica acta.

[130]  R. Tycko,et al.  Polymorphic fibril formation by residues 10-40 of the Alzheimer's beta-amyloid peptide. , 2006, Biophysical journal.

[131]  Justin A. Lemkul,et al.  Perturbation of membranes by the amyloid β‐peptide – a molecular dynamics study , 2009, The FEBS journal.

[132]  P. Kinnunen,et al.  Binding of endostatin to phosphatidylserine-containing membranes and formation of amyloid-like fibers. , 2005, Biochemistry.

[133]  Shreyas Karnik,et al.  CAMP: a useful resource for research on antimicrobial peptides , 2009, Nucleic Acids Res..

[134]  P. F. Almeida,et al.  A quantitative model for the all-or-none permeabilization of phospholipid vesicles by the antimicrobial peptide cecropin A. , 2008, Biophysical journal.

[135]  M. Berkowitz,et al.  Binding and reorientation of melittin in a POPC bilayer: computer simulations. , 2012, Biochimica et biophysica acta.

[136]  K. Matsuzaki,et al.  Polar Angle as a Determinant of Amphipathic α-Helix-Lipid Interactions: A Model Peptide Study , 2000 .

[137]  Kevin Hartman,et al.  A single mutation in the nonamyloidogenic region of islet amyloid polypeptide greatly reduces toxicity. , 2008, Biochemistry.

[138]  Q. Fan,et al.  A Novel Action of Alzheimer's Amyloid β-Protein (Aβ): Oligomeric Aβ Promotes Lipid Release , 2001, The Journal of Neuroscience.

[139]  Stephen H. White,et al.  Experimentally determined hydrophobicity scale for proteins at membrane interfaces , 1996, Nature Structural Biology.

[140]  R. Nussinov,et al.  Structural Convergence Among Diverse, Toxic β-Sheet Ion Channels , 2010, The journal of physical chemistry. B.

[141]  J. Straub,et al.  Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers. , 2006, Journal of the American Chemical Society.

[142]  R. Lal,et al.  Amyloid β protein forms ion channels: implications for Alzheimer's disease pathophysiology , 2001, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[143]  S. Ji,et al.  Cholesterol Is an Important Factor Affecting the Membrane Insertion of β-Amyloid Peptide (Aβ1–40), Which May Potentially Inhibit the Fibril Formation* , 2002, The Journal of Biological Chemistry.

[144]  John E Straub,et al.  Role of water in protein aggregation and amyloid polymorphism. , 2011, Accounts of chemical research.

[145]  S. Radford,et al.  Dynamics in the unfolded state of beta2-microglobulin studied by NMR. , 2005, Journal of molecular biology.

[146]  Felipe Garcia Quiroz,et al.  Amyloid-β-Induced Ion Flux in Artificial Lipid Bilayers and Neuronal Cells: Resolving a Controversy , 2009, Neurotoxicity Research.

[147]  H. Rehage,et al.  Cytotoxicity of insulin within its self-assembly and amyloidogenic pathways. , 2007, Journal of molecular biology.

[148]  Y. Katsube,et al.  The Crystal Structure of Prokaryotic Phospholipase A2 * , 2002, The Journal of Biological Chemistry.

[149]  E. Rojas,et al.  Giant multilevel cation channels formed by Alzheimer disease amyloid beta-protein [A beta P-(1-40)] in bilayer membranes. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[150]  D. Busath,et al.  The use of physical methods in determining gramicidin channel structure and function. , 1993, Annual review of physiology.

[151]  A. Schmidtchen,et al.  Composition effect on peptide interaction with lipids and bacteria: variants of C3a peptide CNY21. , 2007, Biophysical journal.

[152]  Jie Zheng,et al.  An Index for Characterization of Natural and Non-Natural Amino Acids for Peptidomimetics , 2013, PloS one.

[153]  A. Mor,et al.  Structural consequences of carboxyamidation of dermaseptin S3. , 2002, Biochemistry.

[154]  T. Walz,et al.  Murine apolipoprotein serum amyloid A in solution forms a hexamer containing a central channel , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[155]  R. Nussinov,et al.  Annular structures as intermediates in fibril formation of Alzheimer Abeta17-42. , 2008, The journal of physical chemistry. B.

[156]  Jie Zheng,et al.  Engineering Antimicrobial Peptides with Improved Antimicrobial and Hemolytic Activities , 2013, J. Chem. Inf. Model..

[157]  Jingdai Wang,et al.  Molecular modeling of two distinct triangular oligomers in amyloid beta-protein. , 2010, The journal of physical chemistry. B.

[158]  J. Brender,et al.  Induction of negative curvature as a mechanism of cell toxicity by amyloidogenic peptides: the case of islet amyloid polypeptide. , 2009, Journal of the American Chemical Society.

[159]  J. Brender,et al.  Membrane fragmentation by an amyloidogenic fragment of human Islet Amyloid Polypeptide detected by solid-state NMR spectroscopy of membrane nanotubes. , 2007, Biochimica et biophysica acta.

[160]  Ruth Nussinov,et al.  Truncated β-amyloid peptide channels provide an alternative mechanism for Alzheimer’s Disease and Down syndrome , 2010, Proceedings of the National Academy of Sciences.

[161]  M. Sousa,et al.  Deposition of transthyretin in early stages of familial amyloidotic polyneuropathy: evidence for toxicity of nonfibrillar aggregates. , 2001, The American journal of pathology.

[162]  Robert E W Hancock,et al.  Rational Design of α-Helical Antimicrobial Peptides with Enhanced Activities and Specificity/Therapeutic Index* , 2005, Journal of Biological Chemistry.

[163]  A. Gliozzi,et al.  A protective role for lipid raft cholesterol against amyloid-induced membrane damage in human neuroblastoma cells. , 2009, Biochimica et biophysica acta.

[164]  S. Ludtke,et al.  X-ray diffraction study of lipid bilayer membranes interacting with amphiphilic helical peptides: diphytanoyl phosphatidylcholine with alamethicin at low concentrations. , 1995, Biophysical journal.

[165]  B. Bechinger,et al.  Structure and Functions of Channel-Forming Peptides: Magainins, Cecropins, Melittin and Alamethicin , 1997, The Journal of Membrane Biology.

[166]  A. Gotto,et al.  Activation of lecithin:cholesterol acyltransferase by a synthetic model lipid-associating peptide. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[167]  R. Kayed,et al.  Soluble Amyloid Oligomers Increase Bilayer Conductance by Altering Dielectric Structure , 2006, The Journal of general physiology.

[168]  Huey W. Huang,et al.  Action of antimicrobial peptides: two-state model. , 2000, Biochemistry.

[169]  K. Sciarretta,et al.  Inhibition of beta-amyloid(40) fibrillogenesis and disassembly of beta-amyloid(40) fibrils by short beta-amyloid congeners containing N-methyl amino acids at alternate residues. , 2001, Biochemistry.

[170]  E. Rojas,et al.  Alzheimer disease amyloid beta protein forms calcium channels in bilayer membranes: blockade by tromethamine and aluminum. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[171]  R. Nussinov,et al.  Stabilities and conformations of Alzheimer's β-amyloid peptide oligomers (Aβ16–22, Aβ16–35, and Aβ10–35): Sequence effects , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[172]  R. Doolittle,et al.  A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.

[173]  S. White,et al.  Folding amphipathic helices into membranes: amphiphilicity trumps hydrophobicity. , 2007, Journal of molecular biology.

[174]  Joan-Emma Shea,et al.  Effects of Solvent on the Structure of the Alzheimer Amyloid-β(25–35) Peptide , 2006 .

[175]  S. Qian,et al.  Structure of the alamethicin pore reconstructed by x-ray diffraction analysis. , 2008, Biophysical journal.

[176]  D. Eisenberg,et al.  Crystal structure of defensin HNP-3, an amphiphilic dimer: mechanisms of membrane permeabilization. , 1991, Science.

[177]  A. Schmidtchen,et al.  Antimicrobial Activity of Human Prion Protein Is Mediated by Its N-Terminal Region , 2009, PloS one.

[178]  R. Leapman,et al.  A structural model for Alzheimer's β-amyloid fibrils based on experimental constraints from solid state NMR , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[179]  Robert Blumenthal,et al.  The Structure of Human β-Defensin-2 Shows Evidence of Higher Order Oligomerization* , 2000, The Journal of Biological Chemistry.

[180]  P. Cremer,et al.  Effect of average phospholipid curvature on supported bilayer formation on glass by vesicle fusion. , 2006, Biophysical journal.

[181]  R. Epand,et al.  Lipid domains in bacterial membranes and the action of antimicrobial agents. , 2009, Biochimica et biophysica acta.

[182]  Yung Chang,et al.  Examining the levels of ganglioside and cholesterol in cell membrane on attenuation the cytotoxicity of beta-amyloid peptide. , 2008, Colloids and surfaces. B, Biointerfaces.

[183]  Justin A. Lemkul,et al.  The role of molecular simulations in the development of inhibitors of amyloid β-peptide aggregation for the treatment of Alzheimer's disease. , 2012, ACS chemical neuroscience.

[184]  Steven Sheng-Shih Wang,et al.  The influence of phospholipid membranes on bovine calcitonin secondary structure and amyloid formation , 2005, Protein science : a publication of the Protein Society.

[185]  A. Doig,et al.  Inhibition of Toxicity in the β-Amyloid Peptide Fragment β-(25–35) Using N-Methylated Derivatives , 2000, The Journal of Biological Chemistry.

[186]  C. B. Park,et al.  Structure-activity analysis of buforin II, a histone H2A-derived antimicrobial peptide: the proline hinge is responsible for the cell-penetrating ability of buforin II. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[187]  Eric D. Ross,et al.  Prion domains: sequences, structures and interactions , 2005, Nature Cell Biology.

[188]  J. Díaz,et al.  Aβ ion channels. Prospects for treating Alzheimer's disease with Aβ channel blockers , 2007 .

[189]  D. Engelman,et al.  Translocation of molecules into cells by pH-dependent insertion of a transmembrane helix. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[190]  Ruth Nussinov,et al.  Antimicrobial protegrin-1 forms amyloid-like fibrils with rapid kinetics suggesting a functional link. , 2011, Biophysical journal.

[191]  S. White,et al.  Structure, function, and membrane integration of defensins. , 1995, Current opinion in structural biology.

[192]  Y. Shai,et al.  Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes. , 1996, Journal of molecular biology.

[193]  R. Arni,et al.  Phospholipase A2--a structural review. , 1996, Toxicon : official journal of the International Society on Toxinology.

[194]  P. F. Almeida,et al.  Magainin 2 revisited: a test of the quantitative model for the all-or-none permeabilization of phospholipid vesicles. , 2009, Biophysical journal.

[195]  Y. Shai,et al.  Mode of action of the antibacterial cecropin B2: a spectrofluorometric study. , 1994, Biochemistry.

[196]  Michele Vendruscolo,et al.  Prediction of "aggregation-prone" and "aggregation-susceptible" regions in proteins associated with neurodegenerative diseases. , 2005, Journal of molecular biology.

[197]  R. Nussinov,et al.  Interaction of protegrin-1 with lipid bilayers: membrane thinning effect. , 2006, Biophysical journal.

[198]  R. Hancock,et al.  Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles. , 2000, Biochemistry.

[199]  M. Berkowitz,et al.  A molecular dynamics study of the early stages of amyloid‐β(1–42) oligomerization: The role of lipid membranes , 2010, Proteins.

[200]  Tao Xu,et al.  Anticandidal activity of major human salivary histatins , 1991, Infection and immunity.

[201]  David Eisenberg,et al.  A systematic screen of β2-microglobulin and insulin for amyloid-like segments , 2006 .

[202]  K. A. Riske,et al.  Revealing the lytic mechanism of the antimicrobial peptide gomesin by observing giant unilamellar vesicles. , 2010, Langmuir : the ACS journal of surfaces and colloids.

[203]  A. Miranker,et al.  Conserved and cooperative assembly of membrane-bound alpha-helical states of islet amyloid polypeptide. , 2006, Biochemistry.

[204]  A. Naito,et al.  NMR characterization of monomeric and oligomeric conformations of human calcitonin and its interaction with EGCG. , 2012, Journal of molecular biology.

[205]  A. Mor,et al.  Structure-Activity Relationship Study of Antimicrobial Dermaseptin S4 Showing the Consequences of Peptide Oligomerization on Selective Cytotoxicity* , 2000, The Journal of Biological Chemistry.

[206]  A. Blume,et al.  Adsorption of Amyloid β (1–40) Peptide at Phospholipid Monolayers , 2005, Chembiochem : a European journal of chemical biology.

[207]  P. Kinnunen,et al.  Interaction of the antimicrobial peptide pheromone Plantaricin A with model membranes: implications for a novel mechanism of action. , 2006, Biochimica et biophysica acta.

[208]  Ruth Nussinov,et al.  Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35. , 2006, Biophysical journal.

[209]  Ayyalusamy Ramamoorthy,et al.  Phosphatidylethanolamine enhances amyloid fiber-dependent membrane fragmentation. , 2012, Biochemistry.

[210]  P. Fraser,et al.  Design of peptide-based inhibitors of human islet amyloid polypeptide fibrillogenesis. , 2002, Journal of molecular biology.

[211]  David Eisenberg,et al.  Atomic structure of the cross‐β spine of islet amyloid polypeptide (amylin) , 2008, Protein science : a publication of the Protein Society.

[212]  J. Brender,et al.  Lipid composition-dependent membrane fragmentation and pore-forming mechanisms of membrane disruption by pexiganan (MSI-78). , 2013, Biochemistry.

[213]  R I Lehrer,et al.  Antimicrobial peptides in mammalian and insect host defence. , 1999, Current opinion in immunology.

[214]  N. Fujii,et al.  Interactions of an antimicrobial peptide, magainin 2, with outer and inner membranes of Gram-negative bacteria. , 1997, Biochimica et biophysica acta.

[215]  Y. Shai,et al.  Mechanism of the binding, insertion and destabilization of phospholipid bilayer membranes by alpha-helical antimicrobial and cell non-selective membrane-lytic peptides. , 1999, Biochimica et biophysica acta.

[216]  A. Schmidtchen,et al.  Oligotryptophan-tagged antimicrobial peptides and the role of the cationic sequence. , 2009, Biochimica et biophysica acta.

[217]  C. Leuschner,et al.  Membrane disrupting lytic peptides for cancer treatments. , 2004, Current pharmaceutical design.

[218]  C. Dobson Protein misfolding, evolution and disease. , 1999, Trends in biochemical sciences.

[219]  David Eisenberg,et al.  Identifying the amylome, proteins capable of forming amyloid-like fibrils , 2010, Proceedings of the National Academy of Sciences.

[220]  A. Ramamoorthy,et al.  Membrane orientation of MSI-78 measured by sum frequency generation vibrational spectroscopy. , 2011, Langmuir : the ACS journal of surfaces and colloids.

[221]  M. Kirschner,et al.  The primary structure and heterogeneity of tau protein from mouse brain. , 1988, Science.

[222]  Pierre Nicolas,et al.  The plasticins: membrane adsorption, lipid disorders, and biological activity. , 2006, Biochemistry.

[223]  M. Kawahara,et al.  Molecular mechanism of neurodegeneration induced by Alzheimer’s β-amyloid protein: channel formation and disruption of calcium homeostasis , 2000, Brain Research Bulletin.

[224]  Maarten F. M. Engel,et al.  Membrane damage by human islet amyloid polypeptide through fibril growth at the membrane , 2008, Proceedings of the National Academy of Sciences.

[225]  U. Igbavboa,et al.  Lipid Binding to Amyloid β‐Peptide Aggregates: Preferential Binding of Cholesterol as Compared with Phosphatidylcholine and Fatty Acids , 1997, Journal of neurochemistry.

[226]  Alan J. Waring,et al.  Activities of LL-37, a Cathelin-Associated Antimicrobial Peptide of Human Neutrophils , 1998, Antimicrobial Agents and Chemotherapy.

[227]  C. Dobson,et al.  In vitro characterization of lactoferrin aggregation and amyloid formation. , 2003, Biochemistry.

[228]  Themis Lazaridis,et al.  Antimicrobial peptides in toroidal and cylindrical pores. , 2010, Biochimica et biophysica acta.

[229]  Ayyalusamy Ramamoorthy,et al.  Multifunctional host defense peptides: functional and mechanistic insights from NMR structures of potent antimicrobial peptides , 2009, The FEBS journal.

[230]  E. Mandelkow,et al.  Interaction of tau protein with model lipid membranes induces tau structural compaction and membrane disruption. , 2012, Biochemistry.

[231]  Amedeo Caflisch,et al.  Computational models for the prediction of polypeptide aggregation propensity. , 2006, Current opinion in chemical biology.

[232]  S. White,et al.  Protein chemistry at membrane interfaces: non-additivity of electrostatic and hydrophobic interactions. , 2001, Journal of molecular biology.

[233]  A. Ladokhin,et al.  Is lipid bilayer binding a common property of inhibitor cysteine knot ion-channel blockers? , 2007, Biophysical journal.

[234]  N. Fujii,et al.  Molecular basis for membrane selectivity of an antimicrobial peptide, magainin 2. , 1995, Biochemistry.

[235]  Ruth Nussinov,et al.  Consensus features in amyloid fibrils: sheet–sheet recognition via a (polar or nonpolar) zipper structure , 2006, Physical biology.

[236]  R. Nussinov,et al.  Polymorphism in Alzheimer Aβ Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape , 2010, Chemical reviews.

[237]  J. DiMaio,et al.  Seminal Plasma Accelerates Semen-derived Enhancer of Viral Infection (SEVI) Fibril Formation by the Prostatic Acid Phosphatase (PAP248–286) Peptide* , 2012, The Journal of Biological Chemistry.

[238]  M. Stefani,et al.  Biochemical and biophysical features of both oligomer/fibril and cell membrane in amyloid cytotoxicity , 2010, The FEBS journal.

[239]  J. Torres,et al.  NMR Structure of Pardaxin, a Pore-forming Antimicrobial Peptide, in Lipopolysaccharide Micelles , 2009, The Journal of Biological Chemistry.

[240]  P. Lansbury,et al.  Alpha-synuclein, especially the Parkinson's disease-associated mutants, forms pore-like annular and tubular protofibrils. , 2002, Journal of molecular biology.

[241]  R. Nagaraj,et al.  Antibacterial activities and conformations of synthetic alpha-defensin HNP-1 and analogs with one, two and three disulfide bridges. , 2002, The journal of peptide research : official journal of the American Peptide Society.

[242]  A. Scaloni,et al.  A folding-dependent mechanism of antimicrobial peptide resistance to degradation unveiled by solution structure of distinctin. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[243]  U Aebi,et al.  Polymorphic fibrillar assembly of human amylin. , 1997, Journal of structural biology.

[244]  Gerd Krause,et al.  General structural motifs of amyloid protofilaments , 2006, Proceedings of the National Academy of Sciences.

[245]  M. Berkowitz,et al.  Interaction between amyloid-beta (1-42) peptide and phospholipid bilayers: a molecular dynamics study. , 2009, Biophysical journal.

[246]  Gregoria Illya,et al.  Coarse-grained simulation studies of peptide-induced pore formation. , 2008, Biophysical journal.

[247]  B. Bechinger,et al.  Detergent-like actions of linear amphipathic cationic antimicrobial peptides. , 2006, Biochimica et biophysica acta.

[248]  B. Kagan,et al.  Pore formation by beta-2-microglobulin: A mechanism for the pathogenesis of dialysis associated amyloidosis , 2001, Amyloid : the international journal of experimental and clinical investigation : the official journal of the International Society of Amyloidosis.

[249]  R. Murphy Kinetics of amyloid formation and membrane interaction with amyloidogenic proteins. , 2007, Biochimica et biophysica acta.

[250]  B. Hyman,et al.  The Alzheimer's Disease-Associated Amyloid β-Protein Is an Antimicrobial Peptide , 2010, PloS one.

[251]  M. Berkowitz,et al.  Structure of the amyloid-beta (1-42) monomer absorbed to model phospholipid bilayers: a molecular dynamics study. , 2009, The journal of physical chemistry. B.

[252]  M. Lösche,et al.  Soluble amyloid beta-oligomers affect dielectric membrane properties by bilayer insertion and domain formation: implications for cell toxicity. , 2008, Biophysical journal.

[253]  Christian Kandt,et al.  Computer simulation of antimicrobial peptides. , 2007, Current medicinal chemistry.

[254]  S. Dante,et al.  Membrane fusogenic activity of the Alzheimer's peptide A beta(1-42) demonstrated by small-angle neutron scattering. , 2008, Journal of molecular biology.

[255]  K. Miyajima,et al.  Transbilayer transport of ions and lipids coupled with mastoparan X translocation. , 1996, Biochemistry.

[256]  Joan-Emma Shea,et al.  Structural Similarities and Differences between Amyloidogenic and Non-Amyloidogenic Islet Amyloid Polypeptide (IAPP) Sequences and Implications for the Dual Physiological and Pathological Activities of These Peptides , 2013, PLoS Comput. Biol..

[257]  H. Lashuel,et al.  Amyloidogenic protein-membrane interactions: mechanistic insight from model systems. , 2010, Angewandte Chemie.

[258]  Guanghong Wei,et al.  Interactions of Aβ25-35 β-barrel-like oligomers with anionic lipid bilayer and resulting membrane leakage: an all-atom molecular dynamics study. , 2011, The journal of physical chemistry. B.

[259]  A. Waring,et al.  Membrane-dependent oligomeric structure and pore formation of a β-hairpin antimicrobial peptide in lipid bilayers from solid-state NMR , 2006, Proceedings of the National Academy of Sciences.

[260]  R. Nussinov,et al.  Antimicrobial properties of amyloid peptides. , 2012, Molecular pharmaceutics.

[261]  N. Buchete,et al.  Alzheimer Aβ peptide interactions with lipid membranes , 2012, Prion.

[262]  L. Kiessling,et al.  Structure-function relationships for inhibitors of beta-amyloid toxicity containing the recognition sequence KLVFF. , 2001, Biochemistry.

[263]  R. Nussinov,et al.  New structures help the modeling of toxic amyloidbeta ion channels. , 2008, Trends in biochemical sciences.

[264]  M. T. Miranda,et al.  Structure-activity relationship studies of gomesin: importance of the disulfide bridges for conformation, bioactivities, and serum stability. , 2006, Biopolymers.

[265]  C. Dobson,et al.  Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases , 2002, Nature.

[266]  A. Waring,et al.  Membrane thinning effect of the beta-sheet antimicrobial protegrin. , 2000, Biochemistry.

[267]  Siewert J Marrink,et al.  Lipids on the move: simulations of membrane pores, domains, stalks and curves. , 2009, Biochimica et biophysica acta.

[268]  W. DeGrado,et al.  Synthetic amphiphilic peptide models for protein ion channels. , 1988, Science.

[269]  R. Nussinov,et al.  Misfolded amyloid ion channels present mobile beta-sheet subunits in contrast to conventional ion channels. , 2009, Biophysical journal.

[270]  S. V. Sukhanov,et al.  Molecular mechanism of action of β-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers. , 2011, Biochemistry.

[271]  Richard Leapman,et al.  Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR. , 2007, Biochemistry.

[272]  Solution structure of gamma 1-H and gamma 1-P thionins from barley and wheat endosperm determined by 1H-NMR: a structural motif common to toxic arthropod proteins. , 1993 .

[273]  C. Finch,et al.  Alzheimer's disease-affected brain: Presence of oligomeric Aβ ligands (ADDLs) suggests a molecular basis for reversible memory loss , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[274]  J. Brask,et al.  Softening of POPC membranes by magainin. , 2008, Biophysical chemistry.

[275]  Ayyalusamy Ramamoorthy,et al.  Membrane disruption and early events in the aggregation of the diabetes related peptide IAPP from a molecular perspective. , 2012, Accounts of chemical research.

[276]  Stephen H. White,et al.  Designing Transmembrane α-Helices That Insert Spontaneously† , 2000 .

[277]  K. Matsuzaki,et al.  Formation of toxic Abeta(1-40) fibrils on GM1 ganglioside-containing membranes mimicking lipid rafts: polymorphisms in Abeta(1-40) fibrils. , 2008, Journal of molecular biology.

[278]  Justin A. Lemkul,et al.  A comparative molecular dynamics analysis of the amyloid beta-peptide in a lipid bilayer. , 2008, Archives of biochemistry and biophysics.

[279]  T. Ganz,et al.  The NMR Structure of Human β-Defensin-2 Reveals a Novel α-Helical Segment†,‡ , 2001 .

[280]  V. Mutt,et al.  Amino acid sequence of PR-39. Isolation from pig intestine of a new member of the family of proline-arginine-rich antibacterial peptides. , 1991, European journal of biochemistry.

[281]  P. Fraser,et al.  Identification of minimal peptide sequences in the (8-20) domain of human islet amyloid polypeptide involved in fibrillogenesis. , 2003, Journal of structural biology.

[282]  Carl W. Cotman,et al.  Common Structure of Soluble Amyloid Oligomers Implies Common Mechanism of Pathogenesis , 2003, Science.

[283]  Salvador Ventura,et al.  Prediction of "hot spots" of aggregation in disease-linked polypeptides , 2005, BMC Structural Biology.

[284]  S. May,et al.  Membrane perturbation induced by interfacially adsorbed peptides. , 2004, Biophysical journal.

[285]  Bernardo L Sabatini,et al.  Natural Oligomers of the Alzheimer Amyloid-β Protein Induce Reversible Synapse Loss by Modulating an NMDA-Type Glutamate Receptor-Dependent Signaling Pathway , 2007, The Journal of Neuroscience.

[286]  Ayyalusamy Ramamoorthy,et al.  Cholesterol reduces pardaxin's dynamics-a barrel-stave mechanism of membrane disruption investigated by solid-state NMR. , 2010, Biochimica et biophysica acta.

[287]  P. Neudecker,et al.  Structural properties and dynamic behavior of nonfibrillar oligomers formed by PrP(106-126). , 2010, Journal of the American Chemical Society.

[288]  Jie Zheng,et al.  Cholesterol promotes the interaction of Alzheimer β-amyloid monomer with lipid bilayer. , 2012, Journal of molecular biology.

[289]  R. Lal,et al.  Fresh and globular amyloid β protein (1–42) induces rapid cellular degeneration: evidence for AβP channel‐mediated cellular toxicity , 2000 .

[290]  Florentina Tofoleanu,et al.  Molecular interactions of Alzheimer's Aβ protofilaments with lipid membranes. , 2012, Journal of molecular biology.

[291]  Jishou Ruan,et al.  Novel scales based on hydrophobicity indices for secondary protein structure. , 2007, Journal of theoretical biology.

[292]  Bernard Pucci,et al.  Thermodynamic measurements of bilayer insertion of a single transmembrane helix chaperoned by fluorinated surfactants. , 2012, Journal of Molecular Biology.

[293]  Hai Lin,et al.  Amyloid beta ion channel: 3D structure and relevance to amyloid channel paradigm. , 2007, Biochimica et biophysica acta.

[294]  N. Hirokawa,et al.  Tau Proteins: the Molecular Structure and Mode of Binding on Microtubules Materials and Methods Isolation of Tau , 1988 .

[295]  C. Roumestand,et al.  Synthesis and solution structure of the antimicrobial peptide protegrin-1. , 1996, European journal of biochemistry.

[296]  R. Gennaro,et al.  Purification, composition, and activity of two bactenecins, antibacterial peptides of bovine neutrophils , 1989, Infection and immunity.

[297]  U Aebi,et al.  Amyloid fibril formation from full-length and fragments of amylin. , 2000, Journal of structural biology.

[298]  Amitabha Chattopadhyay,et al.  The gramicidin ion channel: a model membrane protein. , 2007, Biochimica et biophysica acta.

[299]  S. Petrou,et al.  Pore-forming proteins and their application in biotechnology. , 2002, Current pharmaceutical biotechnology.

[300]  K. Henzler-Wildman,et al.  NMR structure of the cathelicidin-derived human antimicrobial peptide LL-37 in dodecylphosphocholine micelles. , 2008, Biochemistry.

[301]  P. Kinnunen,et al.  Interactions of the antimicrobial peptides temporins with model biomembranes. Comparison of temporins B and L. , 2002, Biochemistry.

[302]  R. Kayed,et al.  Permeabilization of Lipid Bilayers Is a Common Conformation-dependent Activity of Soluble Amyloid Oligomers in Protein Misfolding Diseases* , 2004, Journal of Biological Chemistry.

[303]  Yongchao Su,et al.  Structure and dynamics of cationic membrane peptides and proteins: Insights from solid‐state NMR , 2011, Protein science : a publication of the Protein Society.

[304]  S. Constantinescu,et al.  Inhibitors of amyloid toxicity based on beta-sheet packing of Abeta40 and Abeta42. , 2006, Biochemistry.

[305]  R. Hancock,et al.  Mode of Action of the Antimicrobial Peptide Indolicidin* , 1996, The Journal of Biological Chemistry.

[306]  K Wüthrich,et al.  NMR structure of the bovine prion protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[307]  D. Eisenberg,et al.  Solution structure of protegrin-1, a broad-spectrum antimicrobial peptide from porcine leukocytes. , 1996, Chemistry & biology.

[308]  S. White,et al.  Membrane protein folding and stability: physical principles. , 1999, Annual review of biophysics and biomolecular structure.

[309]  A. Naito,et al.  Solid-state NMR as a method to reveal structure and membrane-interaction of amyloidogenic proteins and peptides. , 2007, Biochimica et biophysica acta.

[310]  R. Nussinov,et al.  Models of toxic beta-sheet channels of protegrin-1 suggest a common subunit organization motif shared with toxic alzheimer beta-amyloid ion channels. , 2008, Biophysical journal.