Single-cell multi-omics analysis of lineage development and spatial organization in the human fetal cerebellum
暂无分享,去创建一个
Xinran Dong | Chuanyu Liu | Taotao Pan | Yongjie Liu | Yifeng Lin | Zhiheng Xu | Fuqiang Yang | Qiang Tu | Dan Zhang | Ziqi Zhao | Yu Xiong | Yuchen Wang | Min Yang | Kaiyi Liu | Yashan Dang | Mingyang Xia | Da Mi | Wenhao Zhou
[1] Xiaoqun Wang,et al. Single-cell epigenomics and spatiotemporal transcriptomics reveal human cerebellar development , 2023, Nature communications.
[2] Ruiyi Zhang,et al. Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex , 2023, Cell.
[3] Nadezhda T. Doncheva,et al. The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest , 2022, Nucleic Acids Res..
[4] Esther B. E. Becker,et al. Purkinje Cell Patterning—Insights from Single-Cell Sequencing , 2022, Cells.
[5] Andreas T. Schaefer,et al. DNGR-1-tracing marks an ependymal cell subset with damage-responsive neural stem cell potential , 2022, Developmental cell.
[6] H. Zoghbi,et al. The Transcription Factor Pou3f1 Sheds Light on the Development and Molecular Diversity of Glutamatergic Cerebellar Nuclear Neurons in the Mouse , 2022, Frontiers in Molecular Neuroscience.
[7] Qiuxia Guo,et al. Integrated single-cell transcriptomic and epigenetic study of cell state transition and lineage commitment in embryonic mouse cerebellum , 2022, Science advances.
[8] Satoshi Miyashita,et al. Transit Amplifying Progenitors in the Cerebellum: Similarities to and Differences from Transit Amplifying Cells in Other Brain Regions and between Species , 2022, Cells.
[9] P. Khaitovich,et al. Cellular development and evolution of the mammalian cerebellum , 2021, bioRxiv.
[10] Evan Z. Macosko,et al. A transcriptomic atlas of mouse cerebellar cortex comprehensively defines cell types , 2021, Nature.
[11] S. Pfister,et al. Developmental and evolutionary dynamics of cis-regulatory elements in mouse cerebellar cells , 2021, Science.
[12] Xiaochen Bo,et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data , 2021, Innovation.
[13] G. Lin,et al. Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma , 2021, BMC biology.
[14] Yunyan Gu,et al. StemSC: a cross-dataset human stemness index for single-cell samples , 2021, Stem Cell Research & Therapy.
[15] G. Seelig,et al. Spatial and cell-type transcriptional landscape of human cerebellar development , 2021, Nature Neuroscience.
[16] Ariel A. Hippen,et al. miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data , 2021, bioRxiv.
[17] Howard Y. Chang,et al. ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis , 2021, Nature Genetics.
[18] R. Hawkes,et al. Origins, Development, and Compartmentation of the Granule Cells of the Cerebellum , 2021, Frontiers in Neural Circuits.
[19] Christopher G Chute,et al. The Human Phenotype Ontology in 2021 , 2020, Nucleic Acids Res..
[20] Toshima Z. Parris,et al. Identification of candidate genetic variants and altered protein expression in neural stem and mature neural cells support altered microtubule function to be an essential component in bipolar disorder , 2020, Translational Psychiatry.
[21] Catherine J. Stoodley,et al. Consensus Paper: Cerebellum and Social Cognition , 2020, The Cerebellum.
[22] Fabian J Theis,et al. Generalizing RNA velocity to transient cell states through dynamical modeling , 2019, Nature Biotechnology.
[23] P. Hof,et al. Spatiotemporal expansion of primary progenitor zones in the developing human cerebellum , 2019, Science.
[24] Kamil Slowikowski,et al. Fast, sensitive, and accurate integration of single cell data with Harmony , 2019, Nature Methods.
[25] R. Hawkes,et al. Dynamic Expression and New Functions of Early B Cell Factor 2 in Cerebellar Development , 2019, The Cerebellum.
[26] R. Wingate,et al. The generation of granule cells during the development and evolution of the cerebellum , 2019, Developmental dynamics : an official publication of the American Association of Anatomists.
[27] Aaron M. Newman,et al. Single-cell transcriptional diversity is a hallmark of developmental potential , 2019, Science.
[28] Evan Z. Macosko,et al. Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution , 2019, Science.
[29] M. Zhang,et al. Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum , 2019, Journal of molecular cell biology.
[30] L. Trussell,et al. Selective targeting of unipolar brush cell subtypes by cerebellar mossy fibers , 2019, bioRxiv.
[31] K. Millen,et al. What cerebellar malformations tell us about cerebellar development , 2019, Neuroscience Letters.
[32] J. Schmahmann. The cerebellum and cognition , 2019, Neuroscience Letters.
[33] Henry Markram,et al. A Cell Atlas for the Mouse Brain , 2018, Front. Neuroinform..
[34] Paul J. Hoffman,et al. Comprehensive Integration of Single-Cell Data , 2018, Cell.
[35] Qiuxia Guo,et al. Specification of diverse cell types during early neurogenesis of the mouse cerebellum , 2018, bioRxiv.
[36] Jennifer L. Hadley,et al. A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum , 2018, Current Biology.
[37] Evan Z. Macosko,et al. Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain , 2018, Cell.
[38] Erik Sundström,et al. RNA velocity of single cells , 2018, Nature.
[39] Zev J. Gartner,et al. DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors , 2018, bioRxiv.
[40] Nada Jabado,et al. Childhood Cerebellar Tumors Mirror Conserved Fetal Transcriptional Programs , 2018, Nature.
[41] Hideto Takahashi,et al. IgSF21 promotes differentiation of inhibitory synapses via binding to neurexin2α , 2017, Nature Communications.
[42] I. Sugihara,et al. Lobular homology in cerebellar hemispheres of humans, non-human primates and rodents: a structural, axonal tracing and molecular expression analysis , 2017, Brain Structure and Function.
[43] M. Hibi,et al. Evolutionary mechanisms that generate morphology and neural‐circuit diversity of the cerebellum , 2017, Development, growth & differentiation.
[44] Hui Jiang,et al. A reference human genome dataset of the BGISEQ-500 sequencer , 2017, GigaScience.
[45] L. Luo,et al. Cerebellar granule cells encode the expectation of reward , 2017, Nature.
[46] Alexander Dobin,et al. Mapping RNA‐seq Reads with STAR , 2015, Current protocols in bioinformatics.
[47] Catherine J. Stoodley. The Cerebellum and Neurodevelopmental Disorders , 2015, The Cerebellum.
[48] E. Neher,et al. Complexin Stabilizes Newly Primed Synaptic Vesicles and Prevents Their Premature Fusion at the Mouse Calyx of Held Synapse , 2015, The Journal of Neuroscience.
[49] A. Iriki,et al. Periostin, a neurite outgrowth‐promoting factor, is expressed at high levels in the primate cerebral cortex , 2015, Development, growth & differentiation.
[50] C. Sotelo. Molecular Layer Interneurons of the Cerebellum: Developmental and Morphological Aspects , 2015, The Cerebellum.
[51] Thomas J. Ha,et al. Wls Provides a New Compartmental View of the Rhombic Lip in Mouse Cerebellar Development , 2014, The Journal of Neuroscience.
[52] J. Epstein,et al. Semaphorin 3d and Semaphorin 3e Direct Endothelial Motility through Distinct Molecular Signaling Pathways* , 2014, The Journal of Biological Chemistry.
[53] Cole Trapnell,et al. Pseudo-temporal ordering of individual cells reveals dynamics and regulators of cell fate decisions , 2014, Nature Biotechnology.
[54] Masao Ito,et al. Consensus Paper: The Cerebellum's Role in Movement and Cognition , 2013, The Cerebellum.
[55] E. Rassart,et al. Characterization and identification of PARM-1 as a new potential oncogene , 2013, Molecular Cancer.
[56] Masahiko Watanabe,et al. Differential distribution of phospholipase C beta isoforms and diaglycerol kinase-beta in rodents cerebella corroborates the division of unipolar brush cells into two major subtypes , 2013, Brain Structure and Function.
[57] B. Imhof,et al. A complex of synaptic adhesion molecule CADM1, a molecule related to autism spectrum disorder, with MUPP1 in the cerebellum , 2012, Journal of neurochemistry.
[58] E. Mugnaini,et al. Electrophysiological, Morphological, and Topological Properties of Two Histochemically Distinct Subpopulations of Cerebellar Unipolar Brush Cells , 2012, The Cerebellum.
[59] E. Mugnaini,et al. Electrophysiological, Morphological, and Topological Properties of Two Histochemically Distinct Subpopulations of Cerebellar Unipolar Brush Cells , 2012, The Cerebellum.
[60] M. Hibi,et al. Development of the cerebellum and cerebellar neural circuits , 2012, Developmental neurobiology.
[61] C. Cereda,et al. A novel peripherin gene (PRPH) mutation identified in one sporadic amyotrophic lateral sclerosis patient , 2011, Neurobiology of Aging.
[62] E. Mugnaini,et al. The unipolar brush cell: A remarkable neuron finally receiving deserved attention , 2011, Brain Research Reviews.
[63] R. V. Vugt,et al. Local insulin-like growth factor I expression is essential for Purkinje neuron survival at birth , 2010, Cell Death and Differentiation.
[64] Anamaria Sudarov,et al. The Engrailed homeobox genes determine the different foliation patterns in the vermis and hemispheres of the mammalian cerebellum , 2010, Development.
[65] S. Chung,et al. Purkinje cell subtype specification in the cerebellar cortex: Early B-cell factor 2 acts to repress the zebrin II-positive Purkinje cell phenotype , 2008, Neuroscience.
[66] F. Saatcioglu,et al. Human PARM‐1 is a novel mucin‐like, androgen‐regulated gene exhibiting proliferative effects in prostate cancer cells , 2008, International journal of cancer.
[67] Allan R. Jones,et al. Genome-wide atlas of gene expression in the adult mouse brain , 2007, Nature.
[68] Kyle Jansson,et al. An oligodendrocyte-specific zinc-finger transcription regulator cooperates with Olig2 to promote oligodendrocyte differentiation , 2006, Development.
[69] Richard Hawkes,et al. A key role for the HLH transcription factor EBF2COE2,O/E-3 in Purkinje neuron migration and cerebellar cortical topography , 2006, Development.
[70] C. Englund,et al. Development of the Deep Cerebellar Nuclei: Transcription Factors and Cell Migration from the Rhombic Lip , 2006, The Journal of Neuroscience.
[71] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[72] W. O. Renier,et al. Development and developmental disorders of the human cerebellum , 2003, Journal of Neurology.
[73] R. Hawkes,et al. Patterned Purkinje cell death in the cerebellum , 2003, Progress in Neurobiology.
[74] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[75] S. Korsmeyer,et al. Rnx deficiency results in congenital central hypoventilation , 2000, Nature Genetics.
[76] Markus Missler,et al. SV2A and SV2B Function as Redundant Ca2+ Regulators in Neurotransmitter Release , 1999, Neuron.
[77] J. Golden,et al. Myocyte-specific enhancer binding factor 2C expression in human brain development , 1994, Neuroscience.
[78] OUP accepted manuscript , 2022, Briefings In Bioinformatics.
[79] Catherine J. Stoodley,et al. Functional topography of the human cerebellum. , 2018, Handbook of clinical neurology.
[80] F. Rossi,et al. Handbook of the Cerebellum and Cerebellar Disorders , 2013, Springer Netherlands.
[81] M. Hatten,et al. Cerebellum development and medulloblastoma. , 2011, Current topics in developmental biology.