Did the last common ancestor have a biological membrane?

All theories about the origin and evolution of membrane bound cells necessarily have to cope with the nature of the last common ancestor of cellular life. One of the most important aspect of this ancestor, whether it had a closed biological membrane or not, has recently been intensely debated. Having a consensus about it would be an important step towards an eventual (though probably still remote) synthesis of the best elements of the current multitude of cell evolution models. Here I analyse the structural and functional conservation of the few universally distributed proteins that were undoubtedly present in the last common ancestor and that carry out membrane-associated functions. These include the SecY subunit of the protein-conducting channel, the signal recognition particle, the signal recognition particle receptor, the signal peptidase, and the proton ATPase. The conserved structural and functional aspects of these proteins indicate that the last common ancestor was associated with a hydrophobic layer with two hydrophilic sides (an inside and an outside) that had a full-fledged and asymmetric protein insertion and translocation machinery and served as a permeability barrier for protons and other small molecules. It is difficult to escape the conclusion that the last common ancestor had a closed biological membrane from which all cellular membranes evolved.

[1]  J. Eichler Archaeal signal peptidases from the genus Thermoplasma: structural and mechanistic hybrids of the bacterial and eukaryal enzymes. , 2002, Journal of molecular evolution.

[2]  Leon Goldovsky,et al.  A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective. , 2006, Research in microbiology.

[3]  J. Hendrick,et al.  The purified E. coli integral membrane protein SecY E is sufficient for reconstitution of SecA-dependent precursor protein translocation , 1990, Cell.

[4]  T. Cavalier-smith,et al.  The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. , 2002, International journal of systematic and evolutionary microbiology.

[5]  K. Altendorf,et al.  The F0F1-type ATP synthases of bacteria: structure and function of the F0 complex. , 1996, Annual review of microbiology.

[6]  Zsuzsanna Dosztányi,et al.  Transmembrane proteins in the Protein Data Bank: identification and classification , 2004, Bioinform..

[7]  Bert van den Berg,et al.  X-ray structure of a protein-conducting channel , 2004, Nature.

[8]  W. Martin,et al.  On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[9]  K. Jarrell,et al.  Archaeal signal peptides—A comparative survey at the genome level , 2003, Protein science : a publication of the Protein Society.

[10]  Tal Pupko,et al.  Structural Genomics , 2005 .

[11]  Itay Mayrose,et al.  Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues , 2002, ISMB.

[12]  M. Saier,et al.  The general protein secretory pathway: phylogenetic analyses leading to evolutionary conclusions. , 2003, Biochimica et biophysica acta.

[13]  G. Wächtershäuser,et al.  From pre‐cells to Eukarya – a tale of two lipids , 2002, Molecular microbiology.

[14]  Eugene V Koonin,et al.  On the origin of genomes and cells within inorganic compartments , 2005, Trends in Genetics.

[15]  Purificación López-García,et al.  Ancestral lipid biosynthesis and early membrane evolution. , 2004, Trends in biochemical sciences.

[16]  T. Rapoport,et al.  Protein translocation by the Sec61/SecY channel. , 2005, Annual review of cell and developmental biology.

[17]  T. Rapoport,et al.  Protein Translocation by the Sec 61 / SecY Channel , 2006 .

[18]  T. Schwartz Origins and evolution of cotranslational transport to the ER. , 2007, Advances in experimental medicine and biology.

[19]  T. Cavalier-smith,et al.  Rooting the tree of life by transition analyses , 2006, Biology Direct.

[20]  R. L. Charlebois,et al.  Characterization of species-specific genes using a flexible, web-based querying system. , 2003, FEMS microbiology letters.

[21]  E. Koonin On the Origin of Cells and Viruses: A Comparative-Genomic Perspective , 2006 .

[22]  E. Koonin,et al.  The ancient Virus World and evolution of cells , 2006, Biology Direct.

[23]  M. Paetzel,et al.  Signal peptidases. , 2002, Chemical reviews.

[24]  Darren A. Natale,et al.  The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.