Differentiation of gram-negative intermembrane phospholipid transporter function by intrinsic substrate preference
暂无分享,去创建一个
[1] S. Gribaldo,et al. Bridges instead of boats? The Mla system of diderm Firmicute Veillonella parvula reveals an ancestral transenvelope core of phospholipid trafficking , 2023, bioRxiv.
[2] M. Bogdanov. Renovating a double fence with or without notifying the next door and across the street neighbors: why the biogenic cytoplasmic membrane of Gram-negative bacteria display asymmetry? , 2023, Emerging topics in life sciences.
[3] K. C. Huang,et al. The Effects of Temperature on Cellular Physiology. , 2022, Annual review of biophysics.
[4] M. Trent,et al. Absence of YhdP, TamB, and YdbH leads to defects in glycerophospholipid transport and cell morphology in Gram-negative bacteria , 2022, PLoS genetics.
[5] A. Rai,et al. ElyC and Cyclic Enterobacterial Common Antigen Regulate Synthesis of Phosphoglyceride-Linked Enterobacterial Common Antigen , 2021, mBio.
[6] D. Hassabis,et al. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models , 2021, Nucleic Acids Res..
[7] N. Ruiz,et al. YhdP, TamB, and YdbH Are Redundant but Essential for Growth and Lipid Homeostasis of the Gram-Negative Outer Membrane , 2021, mBio.
[8] B. Hoogenboom,et al. Phase separation in the outer membrane of Escherichia coli , 2021, Proceedings of the National Academy of Sciences.
[9] C. Nguyen-the,et al. Short-Chain and Unsaturated Fatty Acids Increase Sequentially From the Lag Phase During Cold Growth of Bacillus cereus , 2021, Frontiers in Microbiology.
[10] Oriol Vinyals,et al. Highly accurate protein structure prediction with AlphaFold , 2021, Nature.
[11] Ryan K. Dale,et al. Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping , 2021, eLife.
[12] J. Cronan. The Escherichia coli FadR transcription factor: Too much of a good thing? , 2020, Molecular microbiology.
[13] Nadezhda T. Doncheva,et al. The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets , 2020, Nucleic Acids Res..
[14] Q. Luo,et al. Structural insights into outer membrane asymmetry maintenance in Gram-negative bacteria by MlaFEDB , 2020, Nature Structural & Molecular Biology.
[15] D. Kahne,et al. Assembly and Maintenance of Lipids at the Bacterial Outer Membrane. , 2020, Chemical reviews.
[16] A. Rai,et al. Enterobacterial Common Antigen: Synthesis and Function of an Enigmatic Molecule , 2020, mBio.
[17] N. Wingreen,et al. The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in Escherichia coli , 2020, Proceedings of the National Academy of Sciences.
[18] Z. Guan,et al. Phospholipid distribution in the cytoplasmic membrane of Gram-negative bacteria is highly asymmetric, dynamic, and cell shape-dependent , 2020, Science Advances.
[19] T. Otomo,et al. ATG2A transfers lipids between membranes in vitro , 2019, Autophagy.
[20] Steven L Salzberg,et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype , 2019, Nature Biotechnology.
[21] T. Silhavy,et al. Envelope stress responses: balancing damage repair and toxicity , 2019, Nature Reviews Microbiology.
[22] T. Silhavy,et al. Envelope stress responses: balancing damage repair and toxicity , 2019, Nature Reviews Microbiology.
[23] T. Walz,et al. ATG2 transports lipids to promote autophagosome biogenesis , 2019, The Journal of cell biology.
[24] P. De Camilli,et al. VPS13A and VPS13C are lipid transport proteins differentially localized at ER contact sites , 2018, The Journal of cell biology.
[25] T. Silhavy,et al. Cyclic Enterobacterial Common Antigen Maintains the Outer Membrane Permeability Barrier of Escherichia coli in a Manner Controlled by YhdP , 2018, mBio.
[26] P. Gameiro,et al. Revealing cardiolipins influence in the construction of a significant mitochondrial membrane model. , 2018, Biochimica et biophysica acta. Biomembranes.
[27] J. Theriot,et al. The outer membrane is an essential load-bearing element in Gram-negative bacteria , 2018, Nature.
[28] T. Silhavy,et al. The Escherichia coli Phospholipase PldA Regulates Outer Membrane Homeostasis via Lipid Signaling , 2018, mBio.
[29] T. Lithgow,et al. The Structure of a Conserved Domain of TamB Reveals a Hydrophobic β Taco Fold , 2017, Structure.
[30] T. Silhavy,et al. Outer Membrane Biogenesis. , 2017, Annual review of microbiology.
[31] H. Taegtmeyer,et al. Impact of Membrane Phospholipid Alterations in Escherichia coli on Cellular Function and Bacterial Stress Adaptation , 2017, Journal of bacteriology.
[32] T. Silhavy,et al. Redefining the essential trafficking pathway for outer membrane lipoproteins , 2017, Proceedings of the National Academy of Sciences.
[33] Anthony M. Kennedy,et al. Distinct membrane properties are differentially influenced by cardiolipin content and acyl chain composition in biomimetic membranes. , 2017, Biochimica et biophysica acta. Biomembranes.
[34] T. Silhavy,et al. Novel RpoS-Dependent Mechanisms Strengthen the Envelope Permeability Barrier during Stationary Phase , 2016, Journal of bacteriology.
[35] B. Fox,et al. The Power of Asymmetry: Architecture and Assembly of the Gram-Negative Outer Membrane Lipid Bilayer. , 2016, Annual review of microbiology.
[36] M. Bogdanov,et al. Effects of elevated growth temperature and heat shock on the lipid composition of the inner and outer membranes of Yersinia pseudotuberculosis. , 2016, Biochimie.
[37] K. C. Huang,et al. Disruption of lipid homeostasis in the Gram-negative cell envelope activates a novel cell death pathway , 2016, Proceedings of the National Academy of Sciences.
[38] T. Silhavy,et al. Outer membrane lipoprotein biogenesis: Lol is not the end , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.
[39] William Stafford Noble,et al. The MEME Suite , 2015, Nucleic Acids Res..
[40] Matthew E. Ritchie,et al. limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.
[41] Kay Nieselt,et al. Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli , 2014, Journal of bacteriology.
[42] Barry L. Wanner,et al. Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing , 2014, mBio.
[43] J. Klein-Seetharaman,et al. X-ray structure, thermodynamics, elastic properties and MD simulations of cardiolipin/dimyristoylphosphatidylcholine mixed membranes. , 2014, Chemistry and physics of lipids.
[44] G. Kritikos,et al. A Genome-Wide Screen for Bacterial Envelope Biogenesis Mutants Identifies a Novel Factor Involved in Cell Wall Precursor Metabolism , 2014, PLoS genetics.
[45] Wei Shi,et al. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..
[46] C. Raetz,et al. Discovery of a cardiolipin synthase utilizing phosphatidylethanolamine and phosphatidylglycerol as substrates , 2012, Proceedings of the National Academy of Sciences.
[47] Manoj Rajaure,et al. The Spanin Complex Is Essential for Lambda Lysis , 2012, Journal of bacteriology.
[48] Chris Morley,et al. Open Babel: An open chemical toolbox , 2011, J. Cheminformatics.
[49] J. Cronan,et al. Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters , 2011, Molecular microbiology.
[50] T. Silhavy,et al. The bacterial cell envelope. , 2010, Cold Spring Harbor perspectives in biology.
[51] David S. Goodsell,et al. AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility , 2009, J. Comput. Chem..
[52] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[53] J. Cronan,et al. Escherichia coli Unsaturated Fatty Acid Synthesis , 2009, The Journal of Biological Chemistry.
[54] T. Silhavy,et al. An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane , 2009, Proceedings of the National Academy of Sciences.
[55] C. Rock,et al. Biosynthesis of Membrane Lipids , 2008, EcoSal Plus.
[56] R. Bishop. Structural biology of membrane-intrinsic beta-barrel enzymes: sentinels of the bacterial outer membrane. , 2008, Biochimica et biophysica acta.
[57] T. Raivio,et al. Activation of the Cpx Envelope Stress Response Down-Regulates Expression of Several Locus of Enterocyte Effacement-Encoded Genes in Enteropathogenic Escherichia coli , 2008, Infection and Immunity.
[58] G. Pabst,et al. Calorimetric, x-ray diffraction, and spectroscopic studies of the thermotropic phase behavior and organization of tetramyristoyl cardiolipin membranes. , 2007, Biophysical journal.
[59] H. Mori,et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.
[60] R. Murphy,et al. Quantitation of cardiolipin molecular species in spontaneously hypertensive heart failure rats using electrospray ionization mass spectrometry Published, JLR Papers in Press, March 16, 2005. DOI 10.1194/jlr.M500031-JLR200 , 2005, Journal of Lipid Research.
[61] T. Silhavy,et al. Chemical Conditionality A GeneticStrategy to Probe Organelle Assembly , 2005, Cell.
[62] T. Kiuchi,et al. Activation of the Rcs Signal Transduction System Is Responsible for the Thermosensitive Growth Defect of an Escherichia coli Mutant Lacking Phosphatidylglycerol and Cardiolipin , 2004, Journal of bacteriology.
[63] H. Nikaido. Molecular Basis of Bacterial Outer Membrane Permeability Revisited , 2003, Microbiology and Molecular Biology Reviews.
[64] Julio Collado-Vides,et al. Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. , 2003, Journal of molecular biology.
[65] Kouji Matsumoto,et al. Envelope Disorder of Escherichia coli Cells Lacking Phosphatidylglycerol , 2002, Journal of bacteriology.
[66] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[67] D. Guo,et al. A second Escherichia coli protein with CL synthase activity. , 2000, Biochimica et biophysica acta.
[68] Kouji Matsumoto,et al. Viability of an Escherichia coli pgsANull Mutant Lacking Detectable Phosphatidylglycerol and Cardiolipin , 2000, Journal of bacteriology.
[69] R. Heath,et al. Roles of the FabA and FabZ β-Hydroxyacyl-Acyl Carrier Protein Dehydratases in Escherichia coli Fatty Acid Biosynthesis* , 1996, The Journal of Biological Chemistry.
[70] H. Kaback,et al. A Phospholipid Acts as a Chaperone in Assembly of a Membrane Transport Protein (*) , 1996, The Journal of Biological Chemistry.
[71] J. Cronan,et al. A new mechanism of transcriptional regulation: Release of an activator triggered by small molecule binding , 1992, Cell.
[72] J. Cronan,et al. Escherichia coli transcription factor that both activates fatty acid synthesis and represses fatty acid degradation. , 1991, Journal of molecular biology.
[73] A. Grossman,et al. A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. , 1989, Microbiological reviews.
[74] A. Ohta,et al. Disruption of the Escherichia coli cls gene responsible for cardiolipin synthesis , 1988, Journal of bacteriology.
[75] C. Rock,et al. Pathways for the incorporation of exogenous fatty acids into phosphatidylethanolamine in Escherichia coli. , 1985, The Journal of biological chemistry.
[76] H. Nikaido,et al. Molecular basis of bacterial outer membrane permeability. , 1985, Microbiological reviews.
[77] M. Vaara,et al. Molecular basis of bacterial outer membrane permeability , 1985 .
[78] L. Enquist,et al. Experiments With Gene Fusions , 1984 .
[79] J. Cronan,et al. Role for fadR in unsaturated fatty acid biosynthesis in Escherichia coli , 1983, Journal of bacteriology.
[80] J. Cronan,et al. Thermal regulation of membrane fluidity in Escherichia coli. Effects of overproduction of beta-ketoacyl-acyl carrier protein synthase I. , 1983, The Journal of biological chemistry.
[81] E. P. Kennedy,et al. Membrane assembly: movement of phosphatidylserine between the cytoplasmic and outer membranes of Escherichia coli , 1982, Journal of bacteriology.
[82] J. Cronan,et al. Beta-ketoacyl-acyl carrier protein synthase II of Escherichia coli. Evidence for function in the thermal regulation of fatty acid synthesis. , 1980, The Journal of biological chemistry.
[83] C. Raetz,et al. Cardiolipin Accumulation in the Inner and Outer Membranes of Escherichia coli Mutants Defective in Phosphatidylserine Synthetase , 1979, Journal of bacteriology.
[84] M. Kito,et al. Distribution of phospholipid molecular species in outer and cytoplasmic membrane of Escherichia coli. , 1979, Journal of biochemistry.
[85] G. Pluschke,et al. Function of phospholipids in Escherichia coli. Characterization of a mutant deficient in cardiolipin synthesis. , 1978, The Journal of biological chemistry.
[86] M. Osborn,et al. Translocation of phospholipids between the outer and inner membranes of Salmonella typhimurium. , 1977, The Journal of biological chemistry.
[87] R. Peters,et al. Distribution of lipids in cytoplasmic and outer membranes of Escherichia coli K12. , 1976, Biochimica et biophysica acta.
[88] H. Nikaido,et al. Outer membrane of Salmonella typhimurium: accessibility of phospholipid head groups to phospholipase c and cyanogen bromide activated dextran in the external medium. , 1976, Biochemistry.
[89] E. Gelmann,et al. An estimate of the minimum amount of unsaturated fatty acid required for growth of Escherichia coli. , 1973, The Journal of biological chemistry.
[90] J E Gander,et al. Mechanism of assembly of the outer membrane of Salmonella typhimurium. Isolation and characterization of cytoplasmic and outer membrane. , 1972, The Journal of biological chemistry.
[91] W. Lennarz,et al. Distribution of Lipids in the Wall and Cytoplasmic Membrane Subfractions of the Cell Envelope of Escherichia coli , 1972, Journal of bacteriology.
[92] John L. Ingraham,et al. EFFECT OF TEMPERATURE ON THE COMPOSITION OF FATTY ACIDS IN ESCHERICHIA COLI , 1962, Journal of bacteriology.
[93] T. Osawa,et al. Atg2 mediates direct lipid transfer between membranes for autophagosome formation , 2019, Nature Structural & Molecular Biology.
[94] Jeffrey E. Barrick,et al. Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. , 2014, Methods in molecular biology.
[95] T. Raivio,et al. Using reporter genes and the Escherichia coli ASKA overexpression library in screens for regulators of the Gram negative envelope stress response. , 2013, Methods in molecular biology.
[96] Peter D. Karp,et al. The EcoCyc Database , 2002, Nucleic Acids Res..
[97] C. Whitfield,et al. Lipopolysaccharide endotoxins. , 2002, Annual review of biochemistry.
[98] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.