EEGdenoiseNet: a benchmark dataset for deep learning solutions of EEG denoising

OBJECTIVE Deep learning networks are increasingly attracting attention in various fields, including electroencephalography (EEG) signal processing. These models provided comparable performance with that of traditional techniques. At present, however, lacks of well-structured and standardized datasets with specific benchmark limit the development of deep learning solutions for EEG denoising. APPROACH Here, we present EEGdenoiseNet, a benchmark EEG dataset that is suited for training and testing deep learning-based denoising models, as well as for performance comparisons across models. EEGdenoiseNet contains 4514 clean EEG segments, 3400 ocular artifact segments and 5598 muscular artifact segments, allowing users to synthesize contaminated EEG segments with the ground-truth clean EEG. MAIN RESULTS We used EEGdenoiseNet to evaluate denoising performance of four classical networks (a fully-connected network, a simple and a complex convolution network, and a recurrent neural network). Our results suggested that deep learning methods have great potential for EEG denoising even under high noise contamination. SIGNIFICANCE Through EEGdenoiseNet, we hope to accelerate the development of the emerging field of deep learning-based EEG denoising. The dataset and code are available at https://github.com/ncclabsustech/EEGdenoiseNet.

[1]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[2]  Erkki Oja,et al.  Independent component analysis: algorithms and applications , 2000, Neural Networks.

[3]  D J McFarland,et al.  An EEG-based brain-computer interface for cursor control. , 1991, Electroencephalography and clinical neurophysiology.

[4]  Conor Hanrahan,et al.  Noise Reduction in EEG Signals using Convolutional Autoencoding Techniques , 2019 .

[5]  Aydin Akan,et al.  Hilbert-Huang Transform based hierarchical clustering for EEG denoising , 2013, 21st European Signal Processing Conference (EUSIPCO 2013).

[6]  Marco Ganzetti,et al.  Online EEG artifact removal for BCI applications by adaptive spatial filtering , 2018, Journal of neural engineering.

[7]  N. Wenderoth,et al.  Detecting large‐scale networks in the human brain using high‐density electroencephalography , 2017, Human brain mapping.

[8]  Gang Wang,et al.  The Removal of EOG Artifacts From EEG Signals Using Independent Component Analysis and Multivariate Empirical Mode Decomposition , 2016, IEEE Journal of Biomedical and Health Informatics.

[9]  Müjdat Çetin,et al.  Prediction of Reaction Time and Vigilance Variability From Spatio-Spectral Features of Resting-State EEG in a Long Sustained Attention Task , 2019, IEEE Journal of Biomedical and Health Informatics.

[10]  Xia Wu,et al.  A novel end-to-end 1D-ResCNN model to remove artifact from EEG signals , 2020, Neurocomputing.

[11]  Xavier Bresson,et al.  FMA: A Dataset for Music Analysis , 2016, ISMIR.

[12]  Ewa Jarocka,et al.  Multi-channel EEG recordings during 3,936 grasp and lift trials with varying weight and friction , 2014, Scientific Data.

[13]  Kai Wang,et al.  Independent Vector Analysis Applied to Remove Muscle Artifacts in EEG Data , 2017, IEEE Transactions on Instrumentation and Measurement.

[14]  W. De Clercq,et al.  Automatic Removal of Ocular Artifacts in the EEG without an EOG Reference Channel , 2006, Proceedings of the 7th Nordic Signal Processing Symposium - NORSIG 2006.

[15]  Shouqian Sun,et al.  Single-trial EEG classification of motor imagery using deep convolutional neural networks , 2017 .

[16]  Marco Congedo,et al.  Building Brain Invaders: EEG data of an experimental validation , 2019, ArXiv.

[17]  Shuicheng Yan,et al.  Parallel convolutional-linear neural network for motor imagery classification , 2015, 2015 23rd European Signal Processing Conference (EUSIPCO).

[18]  Antti Vehkaoja,et al.  A survey on the feasibility of surface EMG in facial pacing. , 2016, Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference.

[19]  T. Demiralp,et al.  Human EEG gamma oscillations in neuropsychiatric disorders , 2005, Clinical Neurophysiology.

[20]  Nikos Komodakis,et al.  Wide Residual Networks , 2016, BMVC.

[21]  Stefano Faralli,et al.  Building a Web-Scale Dependency-Parsed Corpus from CommonCrawl , 2017, LREC.

[22]  Jeffrey Dean,et al.  Efficient Estimation of Word Representations in Vector Space , 2013, ICLR.

[23]  Zheng Ma,et al.  Frequency Principle: Fourier Analysis Sheds Light on Deep Neural Networks , 2019, Communications in Computational Physics.

[24]  Dorothy V. M. Bishop,et al.  Journal of Neuroscience Methods , 2015 .

[25]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[26]  Glenn F. Wilson,et al.  Removal of ocular artifacts from the EEG: a comparison between time-domain regression method and adaptive filtering method using simulated data , 2007, Medical & Biological Engineering & Computing.

[27]  Jürgen Schmidhuber,et al.  Long Short-Term Memory , 1997, Neural Computation.

[28]  José del R. Millán,et al.  Evaluation Criteria for BCI Research , 2007 .

[29]  Tonio Ball,et al.  EEG-GAN: Generative adversarial networks for electroencephalograhic (EEG) brain signals , 2018, ArXiv.

[30]  Panagiotis D. Bamidis,et al.  A semi-simulated EEG/EOG dataset for the comparison of EOG artifact rejection techniques , 2016, Data in brief.

[31]  Tiago H. Falk,et al.  Deep learning-based electroencephalography analysis: a systematic review , 2019, Journal of neural engineering.

[32]  Kenneth Kreutz-Delgado,et al.  ICLabel: An automated electroencephalographic independent component classifier, dataset, and website , 2019, NeuroImage.

[33]  Joseph P. McCleery,et al.  EEG evidence for mirror neuron dysfunction in autism spectrum disorders. , 2005, Brain research. Cognitive brain research.

[34]  Candice T. Stanfield,et al.  The Effect of Electroencephalogram (EEG) Reference Choice on Information-Theoretic Measures of the Complexity and Integration of EEG Signals , 2017, Front. Neurosci..

[35]  Li Fei-Fei,et al.  ImageNet: A large-scale hierarchical image database , 2009, CVPR.

[36]  G Pfurtscheller,et al.  Seperability of four-class motor imagery data using independent components analysis , 2006, Journal of neural engineering.

[37]  J. C. Woestenburg,et al.  The removal of the eye-movement artifact from the EEG by regression analysis in the frequency domain , 1983, Biological Psychology.

[38]  Lukasz Kaiser,et al.  Attention is All you Need , 2017, NIPS.

[39]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[40]  Wolfram Burgard,et al.  Deep learning with convolutional neural networks for EEG decoding and visualization , 2017, Human brain mapping.

[41]  R. Ward,et al.  EMG and EOG artifacts in brain computer interface systems: A survey , 2007, Clinical Neurophysiology.

[42]  Aiping Liu,et al.  Removal of Muscle Artifacts From the EEG: A Review and Recommendations , 2019, IEEE Sensors Journal.

[43]  Saeid Sanei,et al.  A new method for accurate detection of movement intention from single channel EEG for online BCI , 2021, Computer Methods and Programs in Biomedicine Update.

[44]  Changle Zhou,et al.  EEG Signal Reconstruction Using a Generative Adversarial Network With Wasserstein Distance and Temporal-Spatial-Frequency Loss , 2020, Frontiers in Neuroinformatics.

[45]  Marco Congedo,et al.  Brain Invaders calibration-less P300-based BCI with modulation of flash duration Dataset (bi2015a) , 2019 .

[46]  Masaki Nakanishi,et al.  Assessing the effects of voluntary and involuntary eyeblinks in independent components of electroencephalogram , 2016, Neurocomputing.

[47]  Murat Kaya,et al.  A large electroencephalographic motor imagery dataset for electroencephalographic brain computer interfaces , 2018, Scientific Data.

[48]  R. Barry,et al.  EOG correction: which regression should we use? , 2000, Psychophysiology.

[49]  Michael X Cohen,et al.  Analyzing Neural Time Series Data: Theory and Practice , 2014 .

[50]  Ugur Halici,et al.  A novel deep learning approach for classification of EEG motor imagery signals , 2017, Journal of neural engineering.

[51]  Quanying Liu,et al.  A Novel Convolutional Neural Network Model to Remove Muscle Artifacts from EEG , 2020, ICASSP 2021 - 2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[52]  Banghua Yang,et al.  Automatic ocular artifacts removal in EEG using deep learning , 2018, Biomed. Signal Process. Control..

[53]  G. Wilson,et al.  Removal of ocular artifacts from electro-encephalogram by adaptive filtering , 2004, Medical and Biological Engineering and Computing.

[54]  E Donchin,et al.  A new method for off-line removal of ocular artifact. , 1983, Electroencephalography and clinical neurophysiology.

[55]  Bin Hu,et al.  Feature-level fusion approaches based on multimodal EEG data for depression recognition , 2020, Inf. Fusion.

[56]  Kai Keng Ang,et al.  Generative Adversarial Networks-Based Data Augmentation for Brain–Computer Interface , 2020, IEEE Transactions on Neural Networks and Learning Systems.

[57]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[58]  Sung Chan Jun,et al.  EEG datasets for motor imagery brain–computer interface , 2017, GigaScience.

[59]  R. Barry,et al.  Removal of ocular artifact from the EEG: a review , 2000, Neurophysiologie Clinique/Clinical Neurophysiology.

[60]  Paul Geladi,et al.  Principal Component Analysis , 1987, Comprehensive Chemometrics.

[61]  Richard J. Davidson,et al.  Validation of ICA-based myogenic artifact correction for scalp and source-localized EEG , 2010, NeuroImage.

[62]  Dante Mantini,et al.  Hand, foot and lip representations in primary sensorimotor cortex: a high-density electroencephalography study , 2019, Scientific Reports.

[63]  Jeffrey S. Maxwell,et al.  Validation of regression-based myogenic correction techniques for scalp and source-localized EEG. , 2009, Psychophysiology.

[64]  T. Sejnowski,et al.  Removal of eye activity artifacts from visual event-related potentials in normal and clinical subjects , 2000, Clinical Neurophysiology.

[65]  Ron Kohavi,et al.  A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection , 1995, IJCAI.

[66]  Quoc V. Le,et al.  Sequence to Sequence Learning with Neural Networks , 2014, NIPS.

[67]  Nitish Srivastava,et al.  Improving neural networks by preventing co-adaptation of feature detectors , 2012, ArXiv.

[68]  G. Pfurtscheller,et al.  A fully automated correction method of EOG artifacts in EEG recordings , 2007, Clinical Neurophysiology.

[69]  Jiang Li,et al.  EOG artifact removal using a wavelet neural network , 2012, Neurocomputing.

[70]  B. Rockstroh,et al.  Removal of ocular artifacts from the EEG--a biophysical approach to the EOG. , 1985, Electroencephalography and clinical neurophysiology.

[71]  Thierry Pun,et al.  DEAP: A Database for Emotion Analysis ;Using Physiological Signals , 2012, IEEE Transactions on Affective Computing.

[72]  Wim Van Paesschen,et al.  Canonical Correlation Analysis Applied to Remove Muscle Artifacts From the Electroencephalogram , 2006, IEEE Transactions on Biomedical Engineering.

[73]  N. Birbaumer,et al.  BCI2000: a general-purpose brain-computer interface (BCI) system , 2004, IEEE Transactions on Biomedical Engineering.

[74]  Clemens Brunner,et al.  Spatial filtering and selection of optimized components in four class motor imagery EEG data using independent components analysis , 2007, Pattern Recognit. Lett..

[75]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[76]  Yufei Huang,et al.  Deep EEG super-resolution: Upsampling EEG spatial resolution with Generative Adversarial Networks , 2018, 2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI).