SBOL Visual: A Graphical Language for Genetic Designs
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Matthew R. Pocock | James Alastair McLaughlin | Swapnil P Bhatia | H. Sauro | R. Cox | L. Soldatova | J. Beal | G. Stan | Neil Swainston | Joanna Chen | N. Hillson | M. Galdzicki | Kevin Clancy | Jacqueline Quinn | C. Rodriguez | A. Wipat | C. Myers | N. L. Le Novère | U. P | Yizhi Cai | A. Adler | A. Maheshwari | M. Pocock
[1] Ieee Standards Board,et al. Graphic symbols for logic functions, includes IEEE Std 91a-1991 supplement, and IEEE Std 91-1984 , 1991 .
[2] M. Buday R. Sanders K. and Smith D. Schley. AIA CAD layer guidelines , 1997 .
[3] J. Keasling,et al. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids , 2003, Nature Biotechnology.
[4] Emden R. Gansner,et al. Graphviz and Dynagraph – Static and Dynamic Graph Drawing Tools , 2003 .
[5] Michael Jünger,et al. Graph Drawing Software , 2003, Graph Drawing Software.
[6] R. Durbin,et al. The Sequence Ontology: a tool for the unification of genome annotations , 2005, Genome Biology.
[7] Timothy S. Ham,et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.
[8] M. Elowitz,et al. Regulatory activity revealed by dynamic correlations in gene expression noise , 2008, Nature Genetics.
[9] Sarala M. Wimalaratne,et al. The Systems Biology Graphical Notation , 2009, Nature Biotechnology.
[10] Jean Peccoud,et al. Writing DNA with GenoCAD™ , 2009, Nucleic Acids Res..
[11] Drew Endy,et al. BBF RFC 16: Synthetic Biology Open Language Visual (SBOLv) Specification , 2009 .
[12] Deepak Chandran,et al. Computer-aided design of biological circuits using tinkercell , 2010, Bioengineered bugs.
[13] Keith E. J. Tyo,et al. Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.
[14] M. Elowitz,et al. A synthetic three-color scaffold for monitoring genetic regulation and noise , 2010, Journal of biological engineering.
[15] R. Weiss,et al. Automatic Compilation from High-Level Biologically-Oriented Programming Language to Genetic Regulatory Networks , 2011, PloS one.
[16] Tetsuro Toyoda,et al. Methods for open innovation on a genome-design platform associating scientific, commercial, and educational communities in synthetic biology. , 2011, Methods in enzymology.
[17] Swapnil Bhatia,et al. Developer's and user's guide to Clotho v2.0 A software platform for the creation of synthetic biological systems. , 2011, Methods in enzymology.
[18] Shane S. Sturrock,et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..
[19] Timothy S. Ham,et al. Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools , 2012, Nucleic acids research.
[20] J. Silberg,et al. A transposase strategy for creating libraries of circularly permuted proteins , 2012, Nucleic acids research.
[21] The UniProt Consortium,et al. Reorganizing the protein space at the Universal Protein Resource (UniProt) , 2011, Nucleic Acids Res..
[22] Christopher A. Voigt,et al. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca , 2012, Proceedings of the National Academy of Sciences.
[23] Sriram Kosuri,et al. Causes and Effects of N-Terminal Codon Bias in Bacterial Genes , 2013, Science.
[24] Benjamin L. Oakes,et al. Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast , 2012, Nucleic acids research.
[25] Vivek K. Mutalik,et al. Composability of regulatory sequences controlling transcription and translation in Escherichia coli , 2013, Proceedings of the National Academy of Sciences.
[26] Stefano Cardinale,et al. Effects of genetic variation on the E. coli host-circuit interface. , 2013, Cell reports.
[27] Swapnil Bhatia,et al. Pigeon: a design visualizer for synthetic biology. , 2013, ACS synthetic biology.
[28] J. Keasling,et al. High-level semi-synthetic production of the potent antimalarial artemisinin , 2013, Nature.
[29] Allan Kuchinsky,et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology , 2014, Nature Biotechnology.
[30] Hernan G. Garcia,et al. The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli , 2014, PloS one.
[31] R. Weiss,et al. CRISPR transcriptional repression devices and layered circuits in mammalian cells , 2014, Nature Methods.
[32] Nathan J Hillson,et al. j5 DNA assembly design automation. , 2014, Methods in molecular biology.
[33] Yue Shen,et al. YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae , 2015, Nucleic acids research.
[34] Jacob Beal,et al. Accurate predictions of genetic circuit behavior from part characterization and modular composition. , 2015, ACS synthetic biology.
[35] G. Stan,et al. Quantifying cellular capacity identifies gene expression designs with reduced burden , 2015, Nature Methods.
[36] Gary D. Bader,et al. Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative , 2015, Front. Bioeng. Biotechnol..
[37] Patrick McGhee,et al. The Code of Practice , 2016 .