Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis*

Apoptosis is an important physiological process crucially involved in development and homeostasis of multicellular organisms. Although the major signaling pathways have been unraveled, a detailed mechanistic understanding of the complex underlying network remains elusive. We have translated here the current knowledge of the molecular mechanisms of the death-receptor-activated caspase cascade into a mathematical model. A reduction down to the apoptotic core machinery enables the application of analytical mathematical methods to evaluate the system behavior within a wide range of parameters. Using parameter values from the literature, the model reveals an unstable status of survival indicating the need for further control. Based on recent publications we tested one additional regulatory mechanism at the level of initiator caspase activation and demonstrated that the resulting system displays desired characteristics such as bistability. In addition, the results from our model studies allowed us to reconcile the fast kinetics of caspase 3 activation observed at the single cell level with the much slower kinetics found at the level of a cell population.

[1]  J. Rogers Chaos , 1876, Molecular Vibrations.

[2]  AC Tose Cell , 1993, Cell.

[3]  Guy S. Salvesen,et al.  X-linked IAP is a direct inhibitor of cell-death proteases , 1997, Nature.

[4]  M. Peter,et al.  Two CD95 (APO‐1/Fas) signaling pathways , 1998, The EMBO journal.

[5]  J C Reed,et al.  Pro-caspase-3 Is a Major Physiologic Target of Caspase-8* , 1998, The Journal of Biological Chemistry.

[6]  Y. Lazebnik,et al.  Caspases: enemies within. , 1998, Science.

[7]  W. Fiers,et al.  The proteolytic procaspase activation network: an in vitro analysis , 1999, Cell Death and Differentiation.

[8]  R. Zamboni,et al.  Purification and catalytic properties of human caspase family members , 1999, Cell Death and Differentiation.

[9]  H. Stennicke,et al.  Catalytic properties of the caspases , 1999, Cell Death and Differentiation.

[10]  J C Reed,et al.  Cleavage of human inhibitor of apoptosis protein XIAP results in fragments with distinct specificities for caspases , 1999, The EMBO journal.

[11]  Emad S. Alnemri,et al.  Ordering the Cytochrome c–initiated Caspase Cascade: Hierarchical Activation of Caspases-2, -3, -6, -7, -8, and -10 in a Caspase-9–dependent Manner , 1999, The Journal of cell biology.

[12]  B. Zhivotovsky,et al.  Ultrarapid caspase-3 dependent apoptosis induction by serine/threonine phosphatase inhibitors , 1999, Cell Death and Differentiation.

[13]  M. Hengartner The biochemistry of apoptosis , 2000, Nature.

[14]  M. Fussenegger,et al.  A mathematical model of caspase function in apoptosis , 2000, Nature Biotechnology.

[15]  A. Godzik,et al.  BAR: An apoptosis regulator at the intersection of caspases and Bcl-2 family proteins. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Gerard I. Evan,et al.  The coordinate release of cytochrome c during apoptosis is rapid, complete and kinetically invariant , 2000, Nature Cell Biology.

[17]  John Savill,et al.  Corpse clearance defines the meaning of cell death , 2000, Nature.

[18]  J. Tavaré,et al.  Rapid caspase‐3 activation during apoptosis revealed using fluorescence‐resonance energy transfer , 2000, EMBO reports.

[19]  M. DiFiglia,et al.  Pro-caspase-8 Is Predominantly Localized in Mitochondria and Released into Cytoplasm upon Apoptotic Stimulation* , 2001, The Journal of Biological Chemistry.

[20]  Marcel Leist,et al.  Four deaths and a funeral: from caspases to alternative mechanisms , 2001, Nature Reviews Molecular Cell Biology.

[21]  James E. Ferrell,et al.  Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. , 2001, Chaos.

[22]  Peter Scheurich,et al.  Control of Receptor-induced Signaling Complex Formation by the Kinetics of Ligand/Receptor Interaction* , 2002, The Journal of Biological Chemistry.

[23]  A. Ashkenazi,et al.  Targeting death and decoy receptors of the tumour-necrosis factor superfamily , 2002, Nature Reviews Cancer.

[24]  Ingela Parmryd,et al.  Apoptotic crosstalk of TNF receptors: TNF-R2-induces depletion of TRAF2 and IAP proteins and accelerates TNF-R1-dependent activation of caspase-8. , 2002, Journal of cell science.

[25]  M. Butterworth,et al.  Bcl-2 and Bcl-xL Inhibit CD95-mediated Apoptosis by Preventing Mitochondrial Release of Smac/DIABLO and Subsequent Inactivation of X-linked Inhibitor-of-Apoptosis Protein* , 2002, The Journal of Biological Chemistry.

[26]  M. Peter,et al.  Inactivation of Caspase-8 on Mitochondria of Bcl-xL-expressing MCF7-Fas Cells , 2002, The Journal of Biological Chemistry.

[27]  J. Ferrell Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. , 2002, Current opinion in cell biology.

[28]  Markus Rehm,et al.  Single-cell Fluorescence Resonance Energy Transfer Analysis Demonstrates That Caspase Activation during Apoptosis Is a Rapid Process , 2002, The Journal of Biological Chemistry.

[29]  H. Kitano,et al.  Computational systems biology , 2002, Nature.

[30]  J. Doyle,et al.  Reverse Engineering of Biological Complexity , 2002, Science.

[31]  M. Nguyen,et al.  The procaspase-8 isoform, procaspase-8L, recruited to the BAP31 complex at the endoplasmic reticulum , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[32]  G. Salvesen,et al.  Apoptosis: IAP proteins: blocking the road to death's door , 2002, Nature Reviews Molecular Cell Biology.

[33]  J Downward,et al.  Caspase-6 is the direct activator of caspase-8 in the cytochrome c-induced apoptosis pathway: absolute requirement for removal of caspase-6 prodomain , 2002, Cell Death and Differentiation.

[34]  S. Schuster,et al.  Metabolic network structure determines key aspects of functionality and regulation , 2002, Nature.

[35]  P. Krammer,et al.  Glutathione Dependence of Caspase-8 Activation at the Death-inducing Signaling Complex* , 2002, The Journal of Biological Chemistry.

[36]  P. Meier,et al.  IAP degradation: decisive blow or altruistic sacrifice? , 2002, Trends in cell biology.

[37]  Jun R Huh,et al.  Hid, Rpr and Grim negatively regulate DIAP1 levels through distinct mechanisms , 2002, Nature Cell Biology.

[38]  Katherine C. Chen,et al.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. , 2003, Current opinion in cell biology.

[39]  Y. Pu,et al.  Measuring dynamics of caspase-8 activation in a single living HeLa cell during TNFalpha-induced apoptosis. , 2003, Biochemical and biophysical research communications.

[40]  C. Briand,et al.  Insights into the regulatory mechanism for caspase-8 activation. , 2003, Molecular cell.

[41]  J. Ferrell,et al.  A positive-feedback-based bistable ‘memory module’ that governs a cell fate decision , 2003, Nature.

[42]  J. Tschopp,et al.  Induction of TNF Receptor I-Mediated Apoptosis via Two Sequential Signaling Complexes , 2003, Cell.

[43]  A. Strasser,et al.  Caspases signal not only apoptosis but also antigen-induced activation in cells of the immune system. , 2003, Genes & development.

[44]  A Krueger,et al.  The active caspase-8 heterotetramer is formed at the CD95 DISC , 2003, Cell Death and Differentiation.

[45]  Eduardo Sontag,et al.  Untangling the wires: A strategy to trace functional interactions in signaling and gene networks , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Wafik S El-Deiry,et al.  Suppression of caspase-8- and -10-associated RING proteins results in sensitization to death ligands and inhibition of tumor cell growth. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[47]  宁北芳,et al.  疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .