Reconstruction of Genuine Pair-Wise Sequence Alignment
暂无分享,去创建一个
[1] M. Vingron,et al. Quantifying the local reliability of a sequence alignment. , 1996, Protein engineering.
[2] P. Argos,et al. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited. , 1995, Journal of molecular biology.
[3] A. Finkelstein,et al. From analysis of protein structural alignments toward a novel approach to align protein sequences , 2004, Proteins.
[4] M J Sippl,et al. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy. , 2000, Journal of molecular biology.
[5] Folker Meyer,et al. Rose: generating sequence families , 1998, Bioinform..
[6] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[7] D. Lipman,et al. Rapid and sensitive protein similarity searches. , 1985, Science.
[8] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[9] William R. Pearson,et al. Empirical determination of effective gap penalties for sequence comparison , 2002, Bioinform..
[10] I. I. Litvinov,et al. Information on the secondary structure improves the quality of protein sequence alignment , 2006, Molecular Biology.
[11] G. Gonnet,et al. Empirical and structural models for insertions and deletions in the divergent evolution of proteins. , 1993, Journal of molecular biology.
[12] Ronald M. Levy,et al. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases , 2000, Bioinform..
[13] Lars Arvestad,et al. Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction. , 2005, Molecular biology and evolution.
[14] E. Koonin,et al. A universal trend of amino acid gain and loss in protein evolution , 2005, Nature.
[15] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[16] Maximilian Schlosshauer,et al. A novel approach to local reliability of sequence alignments , 2002, Bioinform..
[17] R. Doolittle. Similar amino acid sequences: chance or common ancestry? , 1981, Science.
[18] P. Argos,et al. Determination of reliable regions in protein sequence alignments. , 1990, Protein engineering.
[19] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.