Extracellular Microbial Metabolomics: The State of the Art
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[1] J. Bundy,et al. Time-Resolved Metabolic Footprinting for Nonlinear Modeling of Bacterial Substrate Utilization , 2009, Applied and Environmental Microbiology.
[2] Maizirwan Mel,et al. Metabolomics profiling of extracellular metabolites in CHO-K1 cells cultured in different types of growth media , 2013, Cytotechnology.
[3] B. Le Bizec,et al. How metabolomics can contribute to bio-processes: a proof of concept study for biomarkers discovery in the context of nitrogen-starved microalgae grown in photobioreactors , 2013, Metabolomics.
[4] D. Kwon,et al. Metabolomic analysis of meju during fermentation by ultra performance liquid chromatography-quadrupole-time of flight mass spectrometry (UPLC-Q-TOF MS). , 2011, Food chemistry.
[5] Gregory Stephanopoulos,et al. High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts. , 2005, The Biochemical journal.
[6] G. Mills,et al. Automated headspace gas chromatographic analysis of faecal short-chain fatty acids. , 1993, Journal of chromatography.
[7] Zhuhua Luo,et al. Purification and characterization of an extracellular laccase from the anthracene-degrading fungus Fusarium solani MAS2. , 2010, Bioresource technology.
[8] J. Nielsen,et al. Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory , 2013, PloS one.
[9] Ronan M. T. Fleming,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 , 2007, Nature Protocols.
[10] Ron Wehrens,et al. LC-MS based global metabolite profiling of grapes: solvent extraction protocol optimisation , 2011, Metabolomics.
[11] Jens Nielsen,et al. Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology. , 2008, Trends in biotechnology.
[12] J. Nielsen,et al. Physiological characterization of xylose metabolism in Aspergillus niger under oxygen‐limited conditions , 2007, Biotechnology and bioengineering.
[13] P. Bruheim,et al. The potential of metabolomics tools in bioremediation studies. , 2007, Omics : a journal of integrative biology.
[14] P. Kilmartin,et al. Sauvignon blanc metabolomics: grape juice metabolites affecting the development of varietal thiols and other aroma compounds in wines , 2013, Metabolomics.
[15] S. Villas-Bôas,et al. Extracellular metabolomics: a metabolic footprinting approach to assess fiber degradation in complex media. , 2006, Analytical biochemistry.
[16] J. Nielsen,et al. Global metabolite analysis of yeast: evaluation of sample preparation methods , 2005, Yeast.
[17] Brigitte Gasser,et al. Yeast systems biotechnology for the production of heterologous proteins. , 2009, FEMS yeast research.
[18] Xiaohui Lin,et al. A New Strategy for Analyzing Time-Series Data Using Dynamic Networks: Identifying Prospective Biomarkers of Hepatocellular Carcinoma , 2016, Scientific Reports.
[19] Cherl‐Ho Lee,et al. Characterization of fermentative behaviors of lactic acid bacteria in grape wines through 1H NMR- and GC-based metabolic profiling. , 2009, Journal of agricultural and food chemistry.
[20] Janusz Pawliszyn,et al. New directions in sample preparation for analysis of organic compounds , 1995 .
[21] L. Olsson,et al. Monitoring novel metabolic pathways using metabolomics and machine learning: induction of the phosphoketolase pathway in Aspergillus nidulans cultivations , 2007, Metabolomics.
[22] M. Barrett,et al. Metabolomics Guides Rational Development of a Simplified Cell Culture Medium for Drug Screening against Trypanosoma brucei , 2013, Antimicrobial Agents and Chemotherapy.
[23] B. Palsson,et al. A protocol for generating a high-quality genome-scale metabolic reconstruction , 2010 .
[24] Bernhard O. Palsson,et al. Connecting Extracellular Metabolomic Measurements to Intracellular Flux States in Yeast , 2022 .
[25] Somenath Mitra,et al. Sample preparation techniques in analytical chemistry , 2003 .
[26] Kazuki Saito,et al. Effects of freeze-drying of samples on metabolite levels in metabolome analyses. , 2011, Journal of Separation Science.
[27] Michael Edberg Hansen,et al. A comparison of direct infusion MS and GC-MS for metabolic footprinting of yeast mutants. , 2007, Biotechnology and bioengineering.
[28] S. Villas-Bôas,et al. An Exometabolomics Approach to Monitoring Microbial Contamination in Microalgal Fermentation Processes by Using Metabolic Footprint Analysis , 2011, Applied and Environmental Microbiology.
[29] J. Pawliszyn,et al. Kinetic calibration for automated headspace liquid-phase microextraction. , 2005, Analytical chemistry.
[30] D. Beale,et al. Application of metabolomics to understanding biofilms in water distribution systems: a pilot study , 2013, Biofouling.
[31] E. Ferreira,et al. Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations. , 2011, Molecular bioSystems.
[32] Jingyu Chen,et al. Sampling methods for NMR‐based metabolomics of Staphylococcus aureus , 2010, Biotechnology journal.
[33] Daniel Cozzolino,et al. Metabolic profiling as a tool for revealing Saccharomyces interactions during wine fermentation. , 2006, FEMS yeast research.
[34] M. D. Luque de Castro,et al. Metabolomics analysis II. Preparation of biological samples prior to detection , 2010 .
[35] Ubonrat Siripatrawan,et al. Detection of Escherichia coli in packaged alfalfa sprouts with an electronic nose and an artificial neural network. , 2006, Journal of food protection.
[36] M. Tutino,et al. Engineering of a psychrophilic bacterium for the bioremediation of aromatic compounds , 2010, Bioengineered bugs.
[37] S. Villas-Bôas,et al. Analytical platform for metabolome analysis of microbial cells using methyl chloroformate derivatization followed by gas chromatography–mass spectrometry , 2010, Nature Protocols.
[38] Charles S Henry,et al. Review: Microfluidic applications in metabolomics and metabolic profiling. , 2009, Analytica chimica acta.
[39] Xiaolin Tang,et al. Freeze-Drying Process Design by Manometric Temperature Measurement: Design of a Smart Freeze-Dryer , 2005, Pharmaceutical Research.
[40] J. Pawliszyn. Chapter 13 Solid phase microextraction , 2002 .
[41] B. Palsson,et al. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[42] Royston Goodacre,et al. Metabolic footprinting as a tool for discriminating between brewing yeasts , 2007, Yeast.
[43] B. Ryall,et al. Metabolic profiling of Pseudomonas aeruginosa demonstrates that the anti-sigma factor MucA modulates osmotic stress tolerance. , 2010, Molecular bioSystems.
[44] E. Yang,et al. Purification of a new antifungal compound produced by Lactobacillus plantarum AF1 isolated from kimchi. , 2010, International journal of food microbiology.
[45] Duygu Dikicioglu,et al. Flux Balance Analysis of a Genome‐Scale Yeast Model Constrained by Exometabolomic Data Allows Metabolic System Identification of Genetically Different Strains , 2007, Biotechnology progress.
[46] J. Heijnen,et al. Metabolome dynamic responses of Saccharomyces cerevisiae to simultaneous rapid perturbations in external electron acceptor and electron donor. , 2007, FEMS yeast research.
[47] Silas G. Villas-Boas,et al. Analytical methods from the perspective of method standardization , 2007 .
[48] S. Atkinson,et al. Quorum sensing and social networking in the microbial world , 2009, Journal of The Royal Society Interface.
[49] Adam M. Feist,et al. Next-generation genome-scale models for metabolic engineering. , 2015, Current opinion in biotechnology.
[50] Marco Oldiges,et al. Metabolomics: current state and evolving methodologies and tools , 2007, Applied Microbiology and Biotechnology.
[51] X. Zhuang,et al. Progress in decontamination by halophilic microorganisms in saline wastewater and soil. , 2010, Environmental pollution.
[52] A. Lane,et al. Stable isotope-resolved metabolomics and applications for drug development. , 2012, Pharmacology & therapeutics.
[53] Douglas B. Kell,et al. Functional Genomics Via Metabolic Footprinting: Monitoring Metabolite Secretion by Escherichia Coli Tryptophan Metabolism Mutants Using FT–IR and Direct Injection Electrospray Mass Spectrometry , 2003, Comparative and functional genomics.
[54] Janusz Pawliszyn,et al. Solid-phase microextraction in bioanalysis: New devices and directions. , 2010, Journal of chromatography. A.
[55] Ronan M. T. Fleming,et al. Prediction of intracellular metabolic states from extracellular metabolomic data , 2014, Metabolomics.
[56] S. Villas-Bôas,et al. Can we predict the intracellular metabolic state of a cell based on extracellular metabolite data? , 2015, Molecular bioSystems.
[57] J. Pawliszyn,et al. Protocol for the development of automated high-throughput SPME–GC methods for the analysis of volatile and semivolatile constituents in wine samples , 2010, Nature Protocols.
[58] Mingshu Cao,et al. Phenotypic characterization of transposon-inserted mutants of Clostridium proteoclasticum B316T using extracellular metabolomics. , 2008, Journal of biotechnology.
[59] J. Schnürer,et al. Lactobacillus plantarum MiLAB 393 Produces the Antifungal Cyclic Dipeptides Cyclo(l-Phe-l-Pro) and Cyclo(l-Phe-trans-4-OH-l-Pro) and 3-Phenyllactic Acid , 2002, Applied and Environmental Microbiology.
[60] S. Villas-Bôas,et al. Metabolic fingerprinting of Lactobacillus paracasei: the optimal quenching strategy , 2015, Microbial Cell Factories.
[61] A. K. Smilde,et al. Dynamic metabolomic data analysis: a tutorial review , 2009, Metabolomics.
[62] B. Palsson,et al. Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods , 2012, Nature Reviews Microbiology.
[63] J. Pawliszyn,et al. Evolution of solid-phase microextraction technology. , 2000, Journal of chromatography. A.
[64] D. Leak,et al. The Development of Metabolomic Sampling Procedures for Pichia pastoris, and Baseline Metabolome Data , 2011, PloS one.
[65] D. Kell,et al. High-throughput classification of yeast mutants for functional genomics using metabolic footprinting , 2003, Nature Biotechnology.
[66] T. Næs,et al. Linking gene regulation and the exo-metabolome: A comparative transcriptomics approach to identify genes that impact on the production of volatile aroma compounds in yeast , 2008, BMC Genomics.
[67] J. Nielsen,et al. Dynamic Metabolic Footprinting Reveals the Key Components of Metabolic Network in Yeast Saccharomyces cerevisiae , 2014, International journal of genomics.
[68] Nathan D. Price,et al. Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction , 2015, PLoS Comput. Biol..
[69] J. Pawliszyn,et al. Water analysis by solid phase microextraction based on physical chemical properties of the coating. , 1997, Analytical chemistry.
[70] Ronan M. T. Fleming,et al. MetaboTools: A Comprehensive Toolbox for Analysis of Genome-Scale Metabolic Models , 2016, Front. Physiol..
[71] Nor Azimah Mohd Zain,et al. Potential Use of Liquid Pinapple Waste for Bioethanol Production by Immobilized Bakers’ Yeast , 2013 .
[72] B. Palsson,et al. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. , 2003, Genome research.
[73] Shujuan Yu,et al. The effects of AC electric field on wine maturation , 2008 .
[74] Paul Christakopoulos,et al. The influence of different cultivation conditions on the metabolome of Fusarium oxysporum. , 2005, Journal of biotechnology.
[75] Janusz Pawliszyn,et al. Recent developments in SPME for on-site analysis and monitoring , 2006 .
[76] S. Villas-Bôas,et al. Vinegar Metabolomics: An Explorative Study of Commercial Balsamic Vinegars Using Gas Chromatography-Mass Spectrometry , 2016, Metabolites.
[77] B. Hammock,et al. Mass spectrometry-based metabolomics. , 2007, Mass spectrometry reviews.
[78] Jens Nielsen,et al. Systems Analysis Unfolds the Relationship between the Phosphoketolase Pathway and Growth in Aspergillus nidulans , 2008, PloS one.
[79] S. Capareda,et al. Evaluation of ligninolytic enzymes, ultrasonication and liquid hot water as pretreatments for bioethanol production from cotton gin trash. , 2013, Bioresource technology.
[80] Ronan M. T. Fleming,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 , 2007, Nature Protocols.
[81] H. Jeleń. Use of solid phase microextraction (SPME) for profiling fungal volatile metabolites , 2003, Letters in applied microbiology.
[82] Pat Sandra,et al. Monitoring and fast detection of mycotoxin-producing fungi based on headspace solid-phase microextraction and headspace sorptive extraction of the volatile metabolites. , 2003, Journal of chromatography. A.
[83] D. Kell,et al. Monitoring of complex industrial bioprocesses for metabolite concentrations using modern spectroscopies and machine learning: application to gibberellic acid production. , 2002, Biotechnology and bioengineering.
[84] Sónia Carneiro,et al. The biological interpretation of metabolomic data can be misled by the extraction method used , 2012, Metabolomics.
[85] T. Tolker-Nielsen,et al. Quorum Sensing and Virulence of Pseudomonas aeruginosa during Lung Infection of Cystic Fibrosis Patients , 2010, PloS one.