The regulation and functions of the nuclear RNA exosome complex
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L. Vasiljeva | Cornelia Kilchert | Sina Wittmann | Lidia Vasiljeva | Cornelia Kilchert | Sina Wittmann
[1] Alexander J. Federation,et al. RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity , 2015, Cell.
[2] T. Jensen,et al. Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation. , 2008, Molecular cell.
[3] M. Martin-Magniette,et al. The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana , 2014, PLoS genetics.
[4] N. Gromak,et al. Out of Balance: R-loops in Human Disease , 2014, PLoS genetics.
[5] M. Carmo-Fonseca,et al. A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination , 2010, Nucleic acids research.
[6] M. Mann,et al. Rrp47p Is an Exosome-Associated Protein Required for the 3′ Processing of Stable RNAs , 2003, Molecular and Cellular Biology.
[7] L. Vasiljeva,et al. Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1 , 2015, Cell reports.
[8] Haijia Wu,et al. Quality control of spliced mRNAs requires the shuttling SR proteins Gbp2 and Hrb1 , 2014, Nature Communications.
[9] R. Parker,et al. Yeast Exosome Mutants Accumulate 3′-Extended Polyadenylated Forms of U4 Small Nuclear RNA and Small Nucleolar RNAs , 2000, Molecular and Cellular Biology.
[10] H. Hieronymus,et al. Genome-wide mRNA surveillance is coupled to mRNA export. , 2004, Genes & development.
[11] C. Guthrie,et al. Diverse Forms of RPS9 Splicing Are Part of an Evolving Autoregulatory Circuit , 2012, PLoS genetics.
[12] T. Jensen,et al. The eukaryotic RNA exosome: Same scaffold but variable catalytic subunits , 2011, RNA biology.
[13] C. Lima,et al. The eukaryotic RNA exosome. , 2014, Current opinion in structural biology.
[14] Christophe Malabat,et al. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast , 2009, Nature.
[15] C. Lima,et al. Structure of an Rrp6-RNA exosome complex bound to polyA RNA , 2014, Nature.
[16] V. French,et al. The long and the short of it , 1993, Nature.
[17] L. Vasiljeva,et al. Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast , 2013, Genes & development.
[18] Judith L Campbell,et al. Contribution of Trf4/5 and the Nuclear Exosome to Genome Stability Through Regulation of Histone mRNA Levels in Saccharomyces cerevisiae , 2007, Genetics.
[19] C. Lima,et al. Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel. , 2012, Molecular cell.
[20] M. Mann,et al. The Exosome: A Conserved Eukaryotic RNA Processing Complex Containing Multiple 3′→5′ Exoribonucleases , 1997, Cell.
[21] S. Grewal,et al. RNAi triggered by specialized machinery silences developmental genes and retrotransposons , 2012, Nature.
[22] F. Bonneau,et al. The Yeast Exosome Functions as a Macromolecular Cage to Channel RNA Substrates for Degradation , 2009, Cell.
[23] D. Tollervey,et al. Identification of a Regulated Pathway for Nuclear Pre-mRNA Turnover , 2000, Cell.
[24] N. Proudfoot,et al. Human 5′ → 3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites , 2004, Nature.
[25] D. E. Levin,et al. Mpk1 MAPK Association with the Paf1 Complex Blocks Sen1-Mediated Premature Transcription Termination , 2011, Cell.
[26] Masayuki Yamamoto,et al. Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells , 2010, The EMBO journal.
[27] Uttiya Basu,et al. RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome. , 2015, Advances in immunology.
[28] T. Sugiyama,et al. The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome , 2015, Nature Communications.
[29] Noah Spies,et al. Tramp-mediated Rna Surveillance Prevents Spurious Entry of Rnas into the Schizosaccharomyces Pombe Sirna Pathway Nih Public Access Author Manuscript Gene-specific Srnas Methods Fission Yeast Strains and Plasmids Generation of Small Rna Libraries for 454 Deep Sequencing Supplementary Material Acknowl , 2022 .
[30] E. Andrulis,et al. Genome-wide analysis reveals distinct substrate specificities of Rrp6, Dis3, and core exosome subunits. , 2010, RNA.
[31] Bo T. Porse,et al. Regulation of Axon Guidance by Compartmentalized Nonsense-Mediated mRNA Decay , 2013, Cell.
[32] Grzegorz Kudla,et al. PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast , 2014, Genome Biology.
[33] L. Steinmetz,et al. Bidirectional promoters generate pervasive transcription in yeast , 2009, Nature.
[34] M. Rode,et al. The crystal structure of S. cerevisiae Ski2, a DExH helicase associated with the cytoplasmic functions of the exosome. , 2012, RNA.
[35] Z. Q. Lim,et al. Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. , 2012, Genes & development.
[36] A. Hinnebusch,et al. Cotranscriptional recruitment of yeast TRAMP complex to intronic sequences promotes optimal pre-mRNA splicing , 2013, Nucleic acids research.
[37] L. Steinmetz,et al. Roadblock termination by reb1p restricts cryptic and readthrough transcription. , 2014, Molecular cell.
[38] Li Wang,et al. Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine , 2014, Cell Research.
[39] Bing Ren,et al. N6-methyladenosine-dependent regulation of messenger RNA stability , 2013 .
[40] F. Grosveld,et al. Inefficient processing impairs release of RNA from the site of transcription , 1999, The EMBO journal.
[41] T. Jensen,et al. Interaction profiling identifies the human nuclear exosome targeting complex. , 2011, Molecular cell.
[42] B. Berkhout,et al. Microprocessor, Setx, Xrn2, and Rrp6 Co-operate to Induce Premature Termination of Transcription by RNAPII , 2012, Cell.
[43] T. Jensen,et al. RNA decay machines: the exosome. , 2013, Biochimica et biophysica acta.
[44] K. Cimprich,et al. Breaking bad: R-loops and genome integrity. , 2015, Trends in cell biology.
[45] J. Corden,et al. Regulation of yeast NRD1 expression by premature transcription termination. , 2006, Molecular cell.
[46] G. Ammerer,et al. Controlling gene expression in response to stress , 2011, Nature Reviews Genetics.
[47] J. Butler,et al. Regulation of NAB2 mRNA 3'-end formation requires the core exosome and the Trf4p component of the TRAMP complex. , 2009, RNA.
[48] Pin Tong,et al. Long non-coding RNA-mediated transcriptional interference of a permease gene confers drug tolerance in fission yeast , 2014, Nature Communications.
[49] D. Birchall,et al. EXOSC8 mutations alter mRNA metabolism and cause hypomyelination with spinal muscular atrophy and cerebellar hypoplasia , 2014, Nature Communications.
[50] B. Bilican,et al. Saccharomyces cerevisiae C1D is implicated in both non‐homologous DNA end joining and homologous recombination , 2002, Molecular microbiology.
[51] S. Buratowski,et al. The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain , 2008, Nature Structural &Molecular Biology.
[52] J. Bähler,et al. Negative Regulation of Meiotic Gene Expression by the Nuclear Poly(a)-binding Protein in Fission Yeast* , 2010, The Journal of Biological Chemistry.
[53] R. Ghirlando,et al. Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements. , 2007, RNA.
[54] E. Petfalski,et al. RNA Degradation by the Exosome Is Promoted by a Nuclear Polyadenylation Complex , 2005, Cell.
[55] D. Brow,et al. RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts , 2001, Nature.
[56] Daniel Zenklusen,et al. Bimodal expression of PHO84 is modulated by early termination of antisense transcription , 2013, Nature Structural &Molecular Biology.
[57] J. Griffin,et al. Induction of RNA-stabilized DMA conformers by transcription of an immunoglobulin switch region , 1990, Nature.
[58] N. Conrad,et al. The Human Nuclear Poly(A)-Binding Protein Promotes RNA Hyperadenylation and Decay , 2013, PLoS genetics.
[59] Soichiro Yamanaka,et al. Mtr4-like Protein Coordinates Nuclear RNA Processing for Heterochromatin Assembly and for Telomere Maintenance , 2013, Cell.
[60] L. Steinmetz,et al. The Nuclear PolyA-Binding Protein Nab2p Is Essential for mRNA Production. , 2015, Cell reports.
[61] F. Alt,et al. The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates , 2011, Cell.
[62] Y. Crow,et al. The SKIV2L RNA exosome limits activation of the RIG-I-like receptors , 2014, Nature Immunology.
[63] Albert E. Almada,et al. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome , 2011, Proceedings of the National Academy of Sciences.
[64] D. Libri,et al. Transcription termination and the control of the transcriptome: why, where and how to stop , 2015, Nature Reviews Molecular Cell Biology.
[65] Joseph R. Ecker,et al. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome , 2007, Cell.
[66] Rune Thomsen,et al. Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants , 2007, The EMBO journal.
[67] D. Tollervey,et al. Transcriptome-wide Analysis of Exosome Targets , 2012, Molecular cell.
[68] R. Iggo,et al. Autoregulation of expression of the yeast Dbp2p ‘DEAD‐box’ protein is mediated by sequences in the conserved DBP2 intron. , 1995, The EMBO journal.
[69] U. Bond,et al. Deletion of the nuclear exosome component RRP6 leads to continued accumulation of the histone mRNA HTB1 in S-phase of the cell cycle in Saccharomyces cerevisiae , 2007, Nucleic acids research.
[70] J. Bähler,et al. Global Role for Polyadenylation-Assisted Nuclear RNA Degradation in Posttranscriptional Gene Silencing , 2007, Molecular and Cellular Biology.
[71] H. Kimura,et al. Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing , 2015, Cell.
[72] B. Séraphin,et al. A single subunit, Dis3, is essentially responsible for yeast exosome core activity , 2007, Nature Structural &Molecular Biology.
[73] E. Hurt,et al. The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins , 2015, Cell.
[74] S. Buratowski,et al. Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts. , 2006, Molecular cell.
[75] B. Bilican,et al. DNA damage-dependent interaction of the nuclear matrix protein C1D with Translin-associated factor X (TRAX). , 2002, Journal of cell science.
[76] P. Mitchell,et al. Functions of the exosome in rRNA, snoRNA and snRNA synthesis , 1999, The EMBO journal.
[77] M. Rosbash,et al. Interactions between mRNA Export Commitment, 3′-End Quality Control, and Nuclear Degradation , 2002, Molecular and Cellular Biology.
[78] David Tollervey,et al. A Transcriptome-wide Atlas of RNP Composition Reveals Diverse Classes of mRNAs and lncRNAs , 2013, Cell.
[79] M. Schilling,et al. Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU. , 2004, Molecular cell.
[80] D. Tollervey,et al. Trf4 targets ncRNAs from telomeric and rDNA spacer regions and functions in rDNA copy number control , 2007, The EMBO journal.
[81] Jun-Jie Liu,et al. Visualization of Distinct Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy , 2013, Nature Structural &Molecular Biology.
[82] D. Tollervey,et al. The nuclear RNA polymerase II surveillance system targets polymerase III transcripts , 2011, The EMBO journal.
[83] L. Steinmetz,et al. Yeast Sen1 Helicase Protects the Genome from Transcription-Associated Instability , 2011, Molecular cell.
[84] N. Visa,et al. RRP6/EXOSC10 is required for the repair of DNA double-strand breaks by homologous recombination , 2015, Journal of Cell Science.
[85] C. Guthrie,et al. Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA. , 2006, RNA.
[86] R. Rabadán,et al. E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells , 2013, Genes & development.
[87] N. Proudfoot,et al. Transcriptional interference and gene orientation in yeast: noncoding RNA connections. , 2010, Cold Spring Harbor symposia on quantitative biology.
[88] M. Rosbash,et al. Quality control of mRNA 3′-end processing is linked to the nuclear exosome , 2001, Nature.
[89] Y. Hiraoka,et al. Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes , 2012, Open Biology.
[90] Lisa Muniz,et al. Poly(A) Polymerase and the Nuclear Poly(A) Binding Protein, PABPN1, Coordinate the Splicing and Degradation of a Subset of Human Pre-mRNAs , 2015, Molecular and Cellular Biology.
[91] Konstantina Skourti-Stathaki,et al. R-loops induce repressive chromatin marks over mammalian gene terminators , 2014, Nature.
[92] Š. Vaňáčová,et al. RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3′-end extended forms of snRNAs , 2015, Nucleic acids research.
[93] A. van Hoof,et al. The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities , 2008, Nature Structural &Molecular Biology.
[94] I. Eperon,et al. Human ribosomal protein S13 regulates expression of its own gene at the splicing step by a feedback mechanism , 2007, Nucleic acids research.
[95] G. Chanfreau,et al. Stress-Induced Nuclear RNA Degradation Pathways Regulate Yeast Bromodomain Factor 2 to Promote Cell Survival , 2014, PLoS genetics.
[96] Grzegorz Kudla,et al. Nrd 1-Nab 3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast , 2013 .
[97] O. Rando,et al. Distinct pathways for snoRNA and mRNA termination. , 2006, Molecular cell.
[98] A. Mosley,et al. The Exosome Component Rrp6 Is Required for RNA Polymerase II Termination at Specific Targets of the Nrd1-Nab3 Pathway , 2015, PLoS genetics.
[99] T. Jensen,et al. The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis. , 2015, Cell reports.
[100] N. Visa,et al. Splice-Site Mutations Cause Rrp6-Mediated Nuclear Retention of the Unspliced RNAs and Transcriptional Down-Regulation of the Splicing-Defective Genes , 2010, PloS one.
[101] Steven P. Gygi,et al. RNAi-Dependent and -Independent RNA Turnover Mechanisms Contribute to Heterochromatic Gene Silencing , 2007, Cell.
[102] D. Koshland,et al. RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability. , 2011, Molecular cell.
[103] M. Selbach,et al. Orchestrated Intron Retention Regulates Normal Granulocyte Differentiation , 2013, Cell.
[104] Xiaohong Zhu,et al. An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis. , 2014, Molecular cell.
[105] F. Storici,et al. Transcript RNA-templated DNA recombination and repair , 2014, Nature.
[106] A. Dziembowski,et al. The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro , 2013, Nucleic acids research.
[107] A. Labno,et al. DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts , 2015, Genome research.
[108] P. Cramer,et al. Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation , 2014, Molecular cell.
[109] C. Norbury,et al. Requirement of Fission Yeast Cid14 in Polyadenylation of rRNAs , 2006, Molecular and Cellular Biology.
[110] Jeffrey B. Cheng,et al. A Box H/ACA Small Nucleolar RNA-Like Domain at the Human Telomerase RNA 3′ End , 1999, Molecular and Cellular Biology.
[111] Leighton J. Core,et al. Nuclear stability and transcriptional directionality separate functionally distinct RNA species , 2014, Nature Communications.
[112] Claire Basquin,et al. RNA degradation paths in a 12-subunit nuclear exosome complex , 2015, Nature.
[113] J. Svejstrup,et al. Damage-induced ubiquitylation of human RNA polymerase II by the ubiquitin ligase Nedd4, but not Cockayne syndrome proteins or BRCA1. , 2007, Molecular cell.
[114] Konstantina Skourti-Stathaki,et al. Human Senataxin Resolves RNA/DNA Hybrids Formed at Transcriptional Pause Sites to Promote Xrn2-Dependent Termination , 2011, Molecular cell.
[115] T. Veenstra,et al. Clr4/Suv39 and RNA Quality Control Factors Cooperate to Trigger RNAi and Suppress Antisense RNA , 2011, Science.
[116] B. Séraphin,et al. Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) Polymerase , 2005, Cell.
[117] B. Luisi,et al. Rarely at rest , 2013, RNA biology.
[118] S. Jackson,et al. DNA end-independent activation of DNA-PK mediated via association with the DNA-binding protein C1D. , 1998, Genes & development.
[119] E. Andrulis,et al. The ribonuclease Dis3 is an essential regulator of the developmental transcriptome , 2012, BMC Genomics.
[120] S. Gygi,et al. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex , 2014, RNA.
[121] B. Séraphin,et al. Exosome-mediated quality control: substrate recruitment and molecular activity. , 2008, Biochimica et biophysica acta.
[122] L. Vasiljeva,et al. The Sm Complex Is Required for the Processing of Non-Coding RNAs by the Exosome , 2013, PloS one.
[123] M. Bühler,et al. Chromatin-associated ncRNA activities , 2013, Chromosome Research.
[124] M. Rode,et al. The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex , 2013, Cell.
[125] L. Steinmetz,et al. Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality , 2013, Nature Structural &Molecular Biology.
[126] Monique M. Ryan,et al. Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration , 2012, Nature Genetics.
[127] J. Lachuer,et al. Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast , 2012, The EMBO journal.
[128] Sarah J. Wheelan,et al. Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1 , 2011, PLoS genetics.
[129] A. Corbett,et al. Poly(A) Tail-Mediated Gene Regulation by Opposing Roles of Nab2 and Pab2 Nuclear Poly(A)-Binding Proteins in Pre-mRNA Decay , 2013, Molecular and Cellular Biology.
[130] L. Vasiljeva,et al. lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast , 2014, Genes & development.
[131] T. Jensen,et al. The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L , 2010, The EMBO journal.
[132] Daniel Schulz,et al. Transcriptome Surveillance by Selective Termination of Noncoding RNA Synthesis , 2013, Cell.
[133] Andrés Aguilera,et al. R loops: new modulators of genome dynamics and function , 2015, Nature Reviews Genetics.
[134] J. Wilusz. Long noncoding RNAs: Re-writing dogmas of RNA processing and stability. , 2016, Biochimica et biophysica acta.
[135] J. Weir,et al. Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance , 2010, Proceedings of the National Academy of Sciences.
[136] J. Bähler,et al. A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein. , 2011, Molecular cell.
[137] Xuemei Chen,et al. The Exosome and Trans-Acting Small Interfering RNAs Regulate Cuticular Wax Biosynthesis during Arabidopsis Inflorescence Stem Development1[OPEN] , 2014, Plant Physiology.
[138] N. Krogan,et al. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II , 2004, Nature.
[139] G. Chanfreau,et al. RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns. , 2003, Molecular cell.
[140] L. Steinmetz,et al. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. , 2012, Molecular cell.
[141] Elena Conti,et al. Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex , 2013, Nature.
[142] P. Mitchell,et al. The exosome‐binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase , 2014, The EMBO journal.
[143] Sebastian A. Wagner,et al. A quantitative 14-3-3 interaction screen connects the nuclear exosome targeting complex to the DNA damage response , 2014, Genes & development.
[144] J. Steitz,et al. Tri-snRNP-associated proteins interact with subunits of the TRAMP and nuclear exosome complexes, linking RNA decay and pre-mRNA splicing , 2012, RNA biology.
[145] D. Koshland,et al. The homologous recombination machinery modulates the formation of RNA–DNA hybrids and associated chromosome instability , 2013, eLife.
[146] R. Rabadán,et al. Noncoding RNA transcription targets AID to divergently transcribed loci in B cells , 2014, Nature.
[147] Danny A. Bitton,et al. Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast , 2015, Genome research.
[148] Ross D. Alexander,et al. Cross-talk in transcription, splicing and chromatin: who makes the first call? , 2010, Biochemical Society transactions.
[149] Danny Bergeron,et al. Regulated Intron Retention and Nuclear Pre-mRNA Decay Contribute to PABPN1 Autoregulation , 2015, Molecular and Cellular Biology.
[150] Sherif Abou Elela,et al. Introns within Ribosomal Protein Genes Regulate the Production and Function of Yeast Ribosomes , 2011, Cell.
[151] T. Jensen,et al. Nuclear retention prevents premature cytoplasmic appearance of mRNA. , 2012, Molecular cell.
[152] Huijue Jia,et al. The RNA Helicase Mtr4p Modulates Polyadenylation in the TRAMP Complex , 2011, Cell.
[153] M. Mann,et al. AU Binding Proteins Recruit the Exosome to Degrade ARE-Containing mRNAs , 2001, Cell.
[154] B. McKay. Post-transcriptional regulation of DNA damage-responsive gene expression. , 2014, Antioxidants & redox signaling.
[155] Daniel F Tardiff,et al. L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment. , 2008, Molecular cell.
[156] P. Mitchell. Exosome substrate targeting: the long and short of it. , 2014, Biochemical Society transactions.
[157] J. Bähler,et al. The RNA exosome promotes transcription termination of backtracked RNA polymerase II , 2014, Nature Structural &Molecular Biology.
[158] Andrés Aguilera,et al. R loops: from transcription byproducts to threats to genome stability. , 2012, Molecular cell.
[159] Yuehua Wu,et al. Long noncoding RNAs with snoRNA ends. , 2012, Molecular cell.
[160] M. Ares,et al. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[161] A. Sandelin,et al. PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters , 2011, Nucleic acids research.
[162] Y. Hiraoka,et al. Selective elimination of messenger RNA prevents an incidence of untimely meiosis , 2006, Nature.
[163] Mikkel H. Schierup,et al. RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters , 2008, Science.
[164] Alan G Hinnebusch,et al. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. , 2004, Genes & development.
[165] Quansheng Liu,et al. Reconstitution, Activities, and Structure of the Eukaryotic RNA Exosome , 2006, Cell.
[166] F. Feuerbach,et al. The yeast RPL9B gene is regulated by modulation between two modes of transcription termination , 2012, The EMBO journal.
[167] S. Buratowski,et al. Transcription termination and RNA degradation contribute to silencing of RNA polymerase II transcription within heterochromatin. , 2008, Molecular cell.
[168] J. Manley,et al. A SUMO-dependent interaction between Senataxin and the exosome, disrupted in the neurodegenerative disease AOA2, targets the exosome to sites of transcription-induced DNA damage , 2013, Genes & development.
[169] L. Steinmetz,et al. Extensive degradation of RNA precursors by the exosome in wild-type cells. , 2012, Molecular cell.
[170] B. Frey,et al. Widespread intron retention in mammals functionally tunes transcriptomes , 2014, Genome research.