Rapid and accurate peptide identification from tandem mass spectra.
暂无分享,去创建一个
[1] Bernhard E. Boser,et al. A training algorithm for optimal margin classifiers , 1992, COLT '92.
[2] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[3] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[4] D. N. Perkins,et al. Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.
[5] Roger E. Moore,et al. Qscore: An algorithm for evaluating SEQUEST database search results , 2002, Journal of the American Society for Mass Spectrometry.
[6] John D. Storey. A direct approach to false discovery rates , 2002 .
[7] Alexey I Nesvizhskii,et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.
[8] William Stafford Noble,et al. A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores. , 2003, Journal of proteome research.
[9] A. Masselot,et al. OLAV: Towards high‐throughput tandem mass spectrometry data identification , 2003, Proteomics.
[10] John D. Storey,et al. Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[11] Robertson Craig,et al. TANDEM: matching proteins with tandem mass spectra. , 2004, Bioinformatics.
[12] Steven P Gygi,et al. Intensity-based protein identification by machine learning from a library of tandem mass spectra , 2004, Nature Biotechnology.
[13] John D. Venable,et al. MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. , 2004, Rapid communications in mass spectrometry : RCM.
[14] P. Pevzner,et al. InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. , 2005, Analytical chemistry.
[15] Daniel P. Miranker,et al. A fast coarse filtering method for peptide identification by mass spectrometry , 2006, Bioinform..
[16] William Stafford Noble,et al. Support vector machine , 2013 .
[17] Aaron A. Klammer,et al. Effects of modified digestion schemes on the identification of proteins from complex mixtures. , 2006, Journal of proteome research.
[18] William Stafford Noble,et al. Semi-supervised learning for peptide identification from shotgun proteomics datasets , 2007, Nature Methods.
[19] David Goldberg,et al. Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry. , 2007, Analytical chemistry.
[20] Michael J MacCoss,et al. Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. , 2007, Analytical chemistry.
[21] Ting Chen,et al. Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search , 2007, Bioinform..
[22] Daniel B. Martin,et al. Computational prediction of proteotypic peptides for quantitative proteomics , 2007, Nature Biotechnology.
[23] William Stafford Noble,et al. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. , 2008, Journal of proteome research.
[24] Ruedi Aebersold,et al. The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools. , 2008, Journal of proteome research.