Bacterial Urease and its Role in Long-Lasting Human Diseases

Urease is a virulence factor found in various pathogenic bacteria. It is essential in colonization of a host organism and in maintenance of bacterial cells in tissues. Due to its enzymatic activity, urease has a toxic effect on human cells. The presence of ureolytic activity is an important marker of a number of bacterial infections. Urease is also an immunogenic protein and is recognized by antibodies present in human sera. The presence of such antibodies is connected with progress of several long-lasting diseases, like rheumatoid arthritis, atherosclerosis or urinary tract infections. In bacterial ureases, motives with a sequence and/or structure similar to human proteins may occur. This phenomenon, known as molecular mimicry, leads to the appearance of autoantibodies, which take part in host molecules destruction. Detection of antibodies-binding motives (epitopes) in bacterial proteins is a complex process. However, organic chemistry tools, such as synthetic peptide libraries, are helpful in both, epitope mapping as well as in serologic investigations. In this review, we present a synthetic report on a molecular organization of bacterial ureases - genetic as well as structural. We characterize methods used in detecting urease and ureolytic activity, including techniques applied in disease diagnostic processes and in chemical synthesis of urease epitopes. The review also provides a summary of knowledge about a toxic effect of bacterial ureases on human body and about occurrence of anti-urease antibodies in long-lasting diseases.

[1]  Y. Eyi,et al.  Diagnosis of helicobacter pylori infection. , 2014, The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology.

[2]  B. Kolesińska,et al.  Detection of antibodies against synthetic peptides mimicking ureases fragments in sera of rheumatoid arthritis patients. , 2012, Protein and peptide letters.

[3]  J. Kaper,et al.  Contribution of Urease to Colonization by Shiga Toxin-Producing Escherichia coli , 2012, Infection and Immunity.

[4]  E. L. Carter,et al.  Apoprotein isolation and activation, and vibrational structure of the Helicobacter mustelae iron urease. , 2012, Journal of inorganic biochemistry.

[5]  M. P. Tan,et al.  Urease Activity Represents an Alternative Pathway for Mycobacterium tuberculosis Nitrogen Metabolism , 2012, Infection and Immunity.

[6]  Tao Xi,et al.  Immunological features and the ability of inhibitory effects on enzymatic activity of an epitope vaccine composed of cholera toxin B subunit and B cell epitope from Helicobacter pylori urease A subunit , 2012, Applied Microbiology and Biotechnology.

[7]  T. Murphy,et al.  Expression of urease by Haemophilus influenzae during human respiratory tract infection and role in survival in an acid environment , 2011, BMC Microbiology.

[8]  Christina Backes,et al.  Immunogenicity of autoantigens , 2011, BMC Genomics.

[9]  O. Sanaei,et al.  Clinical Validation of an Office-Based 14C-UBT (Heliprobe) for H. pylori Diagnosis in Iranian Dyspeptic Patients , 2011, Gastroenterology research and practice.

[10]  C. Kaga,et al.  Peptide Array-Based Peptide-Cell Interaction Analysis , 2011 .

[11]  U. Reimer,et al.  Profiling of Enzymatic Activities Using Peptide Arrays , 2011 .

[12]  Leonard Moise,et al.  HelicoVax: epitope-based therapeutic Helicobacter pylori vaccination in a mouse model. , 2011, Vaccine.

[13]  Carl-Fredrik Flach,et al.  A truncated form of HpaA is a promising antigen for use in a vaccine against Helicobacter pylori. , 2011, Vaccine.

[14]  B. Marshall,et al.  Surface Properties of Helicobacter pylori Urease Complex Are Essential for Persistence , 2010, PloS one.

[15]  W. Bishai,et al.  13[C]-Urea Breath Test as a Novel Point-of-Care Biomarker for Tuberculosis Treatment and Diagnosis , 2010, PloS one.

[16]  G. Tobón,et al.  The environment, geo-epidemiology, and autoimmune disease: Rheumatoid arthritis. , 2010, Journal of autoimmunity.

[17]  Yan-chun Wang,et al.  Identification of B-cell epitopes in urease B subunit of Helicobacter pylori bound by neutralizing antibodies. , 2010, Vaccine.

[18]  C. Carlini,et al.  Helicobacter pylori urease activates blood platelets through a lipoxygenase-mediated pathway , 2010, Journal of cellular and molecular medicine.

[19]  E. Newsholme,et al.  Functional Biochemistry in Health and Disease , 2010 .

[20]  C. Follmer Ureases as a target for the treatment of gastric and urinary infections , 2010, Journal of Clinical Pathology.

[21]  M. Foroutan,et al.  Accuracy of Rapid Urease Test in Diagnosing Helicobacter pylori Infection in Patients using NSAIDs , 2010, Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association.

[22]  Andreas Barth,et al.  Following Enzyme Activity with Infrared Spectroscopy , 2010, Sensors.

[23]  Michael Mahler,et al.  Epitope specificity and significance in systemic autoimmune diseases , 2010, Annals of the New York Academy of Sciences.

[24]  S. Ragsdale,et al.  Nickel-based Enzyme Systems* , 2009, The Journal of Biological Chemistry.

[25]  F. Mahjoub,et al.  Application of stool-PCR test for diagnosis of Helicobacter pylori infection in children. , 2009, World journal of gastroenterology.

[26]  S. Boyle,et al.  Enzymatic, immunological and phylogenetic characterization of Brucella suis urease , 2008, BMC Microbiology.

[27]  P. Boisguérin,et al.  Using hydroxymethylphenoxy derivates with the SPOT technology to generate peptides with authentic C-termini. , 2008, Bioorganic & medicinal chemistry letters.

[28]  M. Penichet,et al.  Antigen-Induced Immunomodulation in the Pathogenesis of Atherosclerosis , 2008, Clinical & developmental immunology.

[29]  Tony Pawson,et al.  Defining the Specificity Space of the Human Src Homology 2 Domain*S , 2008, Molecular & Cellular Proteomics.

[30]  P. Glibert,et al.  Measuring urease activity in aquatic environmental samples , 2007 .

[31]  T. Pawson,et al.  Screening for PTB Domain Binding Partners and Ligand Specificity Using Proteome-Derived NPXY Peptide Arrays , 2007, Molecular and Cellular Biology.

[32]  A. Ebringer,et al.  Rheumatoid arthritis is linked to Proteus—the evidence , 2007, Clinical Rheumatology.

[33]  M. Dierich,et al.  Prevalence, structure and expression of urease genes in Shiga toxin-producing Escherichia coli from humans and the environment. , 2006, International journal of hygiene and environmental health.

[34]  T. Pawson,et al.  Screening for PTB Domain Binding Partners and LigandSpecificity Using Proteome-Derived NPXY Peptide Arrays , 2006, Molecular and Cellular Biology.

[35]  F. Mégraud,et al.  Diagnosis of Helicobacter pylori Infection , 2006, Helicobacter.

[36]  C. Carlini,et al.  Ureases display biological effects independent of enzymatic activity: is there a connection to diseases caused by urease-producing bacteria? , 2006, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.

[37]  C. Kaga,et al.  Peptide array-based interaction assay of solid-bound peptides and anchorage-dependant cells and its effectiveness in cell-adhesive peptide design. , 2006, Journal of bioscience and bioengineering.

[38]  Yoon-Sik Lee,et al.  Combinatorial Solid Phase Peptide Synthesis and Bioassays , 2005 .

[39]  P. Veith,et al.  An Immune Response Directed to Proteinase and Adhesin Functional Epitopes Protects against Porphyromonas gingivalis-Induced Periodontal Bone Loss1 , 2005, The Journal of Immunology.

[40]  D. Graham,et al.  B-Cell and T-Cell Immune Responses to Experimental Helicobacter pylori Infection in Humans , 2005, Infection and Immunity.

[41]  M. Yoshizumi,et al.  Association of Helicobacter pylori infection with systemic inflammation and endothelial dysfunction in healthy male subjects. , 2005, Journal of the American College of Cardiology.

[42]  B. Cookson,et al.  Emergence, Spread, and Characterization of Phage Variants of Epidemic Methicillin-Resistant Staphylococcus aureus 16 in England and Wales , 2004, Journal of Clinical Microbiology.

[43]  A. Karmali,et al.  The use of Fourier transform infrared spectroscopy to assay for urease from Pseudomonas aeruginosa and Canavalia ensiformis. , 2004, Analytical biochemistry.

[44]  T. Oku,et al.  Epitope mapping and features of the epitope for monoclonal antibodies inhibiting enzymatic activity of Helicobacter pylori urease , 2004, Biotechnology and bioengineering.

[45]  S. Ciurli,et al.  Nickel trafficking: insights into the fold and function of UreE, a urease metallochaperone. , 2004, Journal of inorganic biochemistry.

[46]  中野 政之 Association of the urease gene with enterohemorrhagic Escherichia coli strains irrespective of their serogroups , 2004 .

[47]  D. Calhoun,et al.  Development of a large-scale HPLC-based purification for the urease from Staphylococcus leei and determination of subunit structure. , 2004, Protein expression and purification.

[48]  R. Hooft van Huijsduijnen,et al.  Mapping of Synergistic Components of Weakly Interacting Protein-Protein Motifs Using Arrays of Paired Peptides* , 2003, The Journal of Biological Chemistry.

[49]  M. Chudy,et al.  Potentiometric Study of Urease Kinetics over pH 5.36–8.21 , 2003 .

[50]  T. Pawson,et al.  Manipulation of EphB2 Regulatory Motifs and SH2 Binding Sites Switches MAPK Signaling and Biological Activity* , 2003, The Journal of Biological Chemistry.

[51]  X. Espanel,et al.  The SPOT technique as a tool for studying protein tyrosine phosphatase substrate specificities , 2002, Protein science : a publication of the Protein Society.

[52]  H. Hedelin Uropathogens and urinary tract concretion formation and catheter encrustations. , 2002, International journal of antimicrobial agents.

[53]  M. Mrksich,et al.  Peptide chips for the quantitative evaluation of protein kinase activity , 2002, Nature Biotechnology.

[54]  Tony Pawson,et al.  Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication , 2001, Nature.

[55]  B. D. Malhotra,et al.  Coimmobilization of urease and glutamate dehydrogenase in electrochemically prepared polypyrrole-polyvinyl sulfonate films , 2001, Applied biochemistry and biotechnology.

[56]  K. Hilpert,et al.  Anti-c-myc antibody 9E10: epitope key positions and variability characterized using peptide spot synthesis on cellulose. , 2001, Protein engineering.

[57]  Nam-Chul Ha,et al.  Supramolecular assembly and acid resistance of Helicobacter pylori urease , 2001, Nature Structural Biology.

[58]  K. Lam,et al.  Peptide and small molecule microarray for high throughput cell adhesion and functional assays. , 2001, Bioconjugate chemistry.

[59]  A. Mascarel,et al.  Diagnosis of Helicobacter pylori Infection: Noninvasive Methods Compared to Invasive Methods and Evaluation of two New Tests , 2001, American Journal of Gastroenterology.

[60]  R. Rippka,et al.  Prochlorococcus marinus strain PCC 9511, a picoplanktonic cyanobacterium, synthesizes the smallest urease. , 2000, Microbiology.

[61]  H. Mobley,et al.  Pathogenesis of Proteus mirabilis urinary tract infection. , 2000, Microbes and infection.

[62]  A. Ebringer,et al.  Molecular mimicry between HLA-DR alleles associated with rheumatoid arthritis and Proteus mirabilis as the Aetiological basis for autoimmunity. , 2000, Microbes and infection.

[63]  Y. Hsu,et al.  A simple method to determine urea concentration using intact Helicobacter pylori and BromoCresol Purple as a pH indicator , 2000, Biotechnology Letters.

[64]  N. Vakil,et al.  The cost-effectiveness of diagnostic testing strategies for Helicobacter pylori , 2000, American Journal of Gastroenterology.

[65]  J. Schneider-Mergener,et al.  Spatially addressed synthesis of amino- and amino-oxy-substituted 1, 3,5-triazine arrays on polymeric membranes. , 2000, Journal of combinatorial chemistry.

[66]  R. Burne,et al.  Bacterial ureases in infectious diseases. , 2000, Microbes and infection.

[67]  Haehnel,et al.  Combinatorial Synthesis of Four-Helix Bundle Hemoproteins for Tuning of Cofactor Properties. , 2000, Angewandte Chemie.

[68]  J. Braun,et al.  The 19 kDa protein of Yersinia enterocolitica O:3 is recognized on the cellular and humoral level by patients with Yersinia induced reactive arthritis. , 1999, The Journal of rheumatology.

[69]  T. Monath,et al.  Serologic IgG response to urease in Helicobacter pylori-infected persons from Mexico. , 1999, The American journal of tropical medicine and hygiene.

[70]  J. Schneider-Mergener,et al.  Regions of Endonuclease EcoRII Involved in DNA Target Recognition Identified by Membrane-bound Peptide Repertoires* , 1999, The Journal of Biological Chemistry.

[71]  W. Zaborska,et al.  Calorimetric study of inhibition of urease by 2-mercaptoethanol: Procedures based upon integrated rate equations , 1998 .

[72]  S. Futagami,et al.  Systemic and local immune responses againstHelicobacter pylori urease in patients with chronic gastritis: distinct IgA and IgG productive sites , 1998, Gut.

[73]  Z. Kaminski,et al.  A Study on the Activation of Carboxylic Acids by Means of 2-Chloro-4,6-dimethoxy-1,3,5-triazine and 2-Chloro-4,6-diphenoxy-1,3,5-triazine , 1998 .

[74]  B. Dunn,et al.  Structure, function and localization of Helicobacter pylori urease. , 1998, The Yale journal of biology and medicine.

[75]  M. Walker,et al.  Characterisation of the urease gene cluster in Bordetella bronchiseptica. , 1998, Gene.

[76]  M. Yaffe,et al.  The Structural Basis for 14-3-3:Phosphopeptide Binding Specificity , 1997, Cell.

[77]  J. MacInnes,et al.  Genetic and biochemical analyses of Actinobacillus pleuropneumoniae urease , 1997, Infection and immunity.

[78]  D. Calhoun,et al.  Urease from a potentially pathogenic coccoid isolate: purification, characterization, and comparison to other microbial ureases , 1997, Infection and immunity.

[79]  B E Dunn,et al.  Helicobacter pylori , 1997, Clinical microbiology reviews.

[80]  T. Kirkland,et al.  Isolation and characterization of the urease gene (URE) from the pathogenic fungus Coccidioides immitis. , 1997, Gene.

[81]  O. Niwa,et al.  Identification of the ure1+ gene encoding urease in fission yeast , 1997, Current Genetics.

[82]  S. Cole,et al.  Clostridium perfringens urease genes are plasmid borne , 1997, Infection and immunity.

[83]  B. Boyan,et al.  A mechanism of adaptation to hypergravity in the statocyst of Aplysia californica , 1996, Hearing Research.

[84]  J. Burnie,et al.  The application of epitope mapping in the development of a new serological test for Helicobacter pylori infection. , 1996, Journal of immunological methods.

[85]  M. Horwitz,et al.  Purification, characterization, and genetic analysis of Mycobacterium tuberculosis urease, a potentially critical determinant of host-pathogen interaction , 1995, Journal of bacteriology.

[86]  R. Hausinger,et al.  Copyright � 1995, American Society for Microbiology Molecular Biology of Microbial Ureases , 1995 .

[87]  R. Hausinger,et al.  Evidence for the presence of urease apoprotein complexes containing UreD, UreF, and UreG in cells that are competent for in vivo enzyme activation , 1995, Journal of bacteriology.

[88]  J. Polacco,et al.  Essential Role of Urease in Germination of Nitrogen-Limited Arabidopsis thaliana Seeds , 1995, Plant physiology.

[89]  I. Park,et al.  Requirement of carbon dioxide for in vitro assembly of the urease nickel metallocenter , 1995, Science.

[90]  D. Maneval,et al.  Single-step purification of Proteus mirabilis urease accessory protein UreE, a protein with a naturally occurring histidine tail, by nickel chelate affinity chromatography , 1994, Journal of bacteriology.

[91]  R. Frank,et al.  A new safety-catch peptide-resin linkage for the direct release of peptides into aqueous buffers , 1994 .

[92]  L. Tompkins,et al.  Molecular analysis of urease genes from a newly identified uncultured species of Helicobacter , 1994, Infection and immunity.

[93]  R. Hausinger,et al.  In vitro activation of urease apoprotein and role of UreD as a chaperone required for nickel metallocenter assembly. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[94]  First,et al.  Identification of the Yersinia enterocolitica urease beta subunit as a target antigen for human synovial T lymphocytes in reactive arthritis , 1993, Infection and immunity.

[95]  H. Mobley,et al.  Sequence of the Proteus mirabilis urease accessory gene ureG. , 1993, Gene.

[96]  A. Labigne,et al.  Cloning, expression and sequencing of Helicobacter felis urease genes , 1993, Molecular microbiology.

[97]  R. Russell,et al.  Contribution of Proteus mirabilis urease to persistence, urolithiasis, and acute pyelonephritis in a mouse model of ascending urinary tract infection , 1993, Infection and immunity.

[98]  R. Hausinger,et al.  Purification and characterization of Klebsiella aerogenes UreE protein: A nickel‐binding protein that functions in urease metallocenter assembly , 1993, Protein science : a publication of the Protein Society.

[99]  R. Hausinger,et al.  Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis , 1992, Journal of bacteriology.

[100]  A. Labigne,et al.  Shuttle cloning and nucleotide sequences of Helicobacter pylori genes responsible for urease activity , 1991, Journal of bacteriology.

[101]  M. Barer,et al.  Serodiagnosis of Helicobacter pylori infection in childhood , 1990, Journal of clinical microbiology.

[102]  R. Hausinger,et al.  Sequence of the Klebsiella aerogenes urease genes and evidence for accessory proteins facilitating nickel incorporation , 1990, Journal of bacteriology.

[103]  M. Pallen,et al.  Nucleotide sequence of two genes from Helicobacter pylori encoding for urease subunits. , 1990, Nucleic Acids Research.

[104]  H. Mobley,et al.  Proteus mirabilis urease: nucleotide sequence determination and comparison with jack bean urease , 1989, Journal of bacteriology.

[105]  R. Hausinger,et al.  Microbial ureases: significance, regulation, and molecular characterization. , 1989, Microbiological reviews.

[106]  S. Walz,et al.  Multiple proteins encoded within the urease gene complex of Proteus mirabilis , 1988, Journal of bacteriology.

[107]  R. Logan,et al.  14C-UREA BREATH ANALYSIS, A NON-INVASIVE TEST FOR CAMPYLOBACTER PYLORI IN THE STOMACH , 1987, The Lancet.

[108]  J. Waterlow,et al.  The contribution of endogenous urea to faecal ammonia in man, determined by 15N labelling of plasma urea. , 1985, Clinical science.

[109]  M. Yeo,et al.  Urease-positive Vibrio parahaemolyticus strain , 1980, Journal of clinical microbiology.

[110]  A. L. Guy,et al.  An improved method for the detection and preservation of urease activity in polyacrylamide gels. , 1980, Analytical biochemistry.

[111]  J. Hamilton-miller,et al.  Rapid screening for urease inhibitors. , 1979, Investigative urology.

[112]  Y. Benno,et al.  Urease-producing species of intestinal anaerobes and their activities , 1979, Applied and environmental microbiology.

[113]  J. W. Campbell,et al.  Urease: a sensitive and specific radiometric assay. , 1972, Enzymologia.

[114]  J. Montalvo An improved urease electrode. , 1970, Analytical biochemistry.

[115]  D. P. Blattler,et al.  Dissociation of Urease by Glycol and Glycerol , 1967, Nature.

[116]  M. W. Weatherburn Phenol-hypochlorite reaction for determination of ammonia , 1967 .

[117]  H. Schlegel,et al.  NADH-Dependent coupled enzyme assay for urease and other ammonia-producing systems. , 1966, Analytical biochemistry.

[118]  S. Katz Direct Potentiometric Determination of Urease Activity. , 1964 .

[119]  I. Fridovich,et al.  A CONTINUAL SPECTROPHOTOMETRIC DETERMINATION OF AMMONIA-PRODUCING SYSTEMS. , 1964, Analytical biochemistry.

[120]  W. B. Christensen,et al.  Urea Decomposition as a Means of Differentiating Proteus and Paracolon Cultures from Each Other and from Salmonella and Shigella Types , 1946, Journal of bacteriology.

[121]  Shao-Yong Lu,et al.  Structural and functional role of nickel ions in urease by molecular dynamics simulation , 2010, JBIC Journal of Biological Inorganic Chemistry.

[122]  R. Peek,et al.  Helicobacter pylori dysregulation of gastric epithelial tight junctions by urease-mediated myosin II activation. , 2009, Gastroenterology.

[123]  F. Sicheri,et al.  Characterization of kinase target phosphorylation consensus motifs using peptide SPOT arrays. , 2009, Methods in molecular biology.

[124]  A. Torzewska,et al.  [Proteus bacilli: features and virulence factors]. , 2007, Postepy higieny i medycyny doswiadczalnej.

[125]  M. Yoshizumi,et al.  Association of Helicobacter pylori infection with systemic inflammation and endothelial dysfunction in healthy male subjects. , 2005, Journal of the American College of Cardiology.

[126]  M. Schwemmle,et al.  The use of peptide arrays for the characterization of monospecific antibody repertoires from polyclonal sera of psychiatric patients suspected of infection by Borna Disease Virus , 2004, Molecular Diversity.

[127]  E. Ramirez,et al.  Rapid test for determination of urea hydrolysis , 2004, Antonie van Leeuwenhoek.

[128]  G. Sachs,et al.  Interactions among the seven Helicobacter pylori proteins encoded by the urease gene cluster. , 2003, American journal of physiology. Gastrointestinal and liver physiology.

[129]  K. Lam,et al.  Combinatorial peptide library methods for immunobiology research. , 2003, Experimental hematology.

[130]  V. Obradović,et al.  14C-urea breath test in the detection of Helicobacter pylori infection. , 2001, Nuclear medicine review. Central & Eastern Europe.

[131]  V. Obradović,et al.  14 C-urea breath test in the detection of Helicobacter pylori infection , 2001 .

[132]  廣田 薫 Identification of an antigenic epitope in Helicobacter pylori urease that induces neutralizing antibody production , 2001 .

[133]  A. Sirko,et al.  Plant ureases: roles and regulation. , 2000, Acta biochimica Polonica.

[134]  R. Frank,et al.  Analysis of protein kinase substrate specificity by the use of peptide libraries on cellulose paper (SPOT-method). , 1998, Methods in molecular biology.

[135]  R. Frank,et al.  Improved Preparation of a Safety-Catch Linker for the Solid Phase Synthesis of Peptide Acids Finally Released into Aqueous Buffers , 1998 .

[136]  Z. Kaminski,et al.  THERMAL ISOMERIZATION OF 2-ACYLOXY-4,6-DIMETHOXY-1,3,5-TRIAZINES TO 1-ACYL-3,5-DIMETHYL-1,3,5-TRIAZIN-2,4,6(1H,3H,5H)-TRIONES. CRYSTAL STRUCTURE OF 1- (2,2-DIMETHYLPROPANOYLOXY)-3,5-DIMETHYL-1,3,5-TRIAZIN-2,4,6(1H,3H,5H)-TRION E , 1996 .

[137]  R. Frank Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support , 1992 .

[138]  H. Kaltwasser,et al.  Cloning of the genes encoding urease from Proteus vulgaris and sequencing of the structural genes. , 1990, FEMS microbiology letters.

[139]  J. Berzofsky,et al.  The antigenic structure of proteins: a reappraisal. , 1984, Annual review of immunology.

[140]  J. Ruiz-Herrera,et al.  A continuous method for the measurement of urease activity. , 1969, Analytical biochemistry.