METTL3 maintains epithelial homeostasis through m6A-dependent regulation of chromatin modifiers

The balance between epithelial stemness and differentiation requires the precise regulation of gene expression programs. Epitranscriptomic RNA modifications have been implicated in both epithelial development as well as cancers. However, the underlying mechanisms are poorly understood. Here, we show that deletion of the m6A methyltransferase, METTL3, impairs the m6A-mediated degradation of numerous mRNA transcripts encoding critical chromatin modifying enzymes, resulting in widespread gene expression abnormalities as well as both aberrant cutaneous and oral epithelial phenotypes in vivo. Collectively, these results offer new insights into a new layer of gene regulation within epithelial surface tissues and will inform future epitranscriptomic studies within epithelial cancer and developmental biology.

[1]  S. Jaffrey,et al.  Hidden codes in mRNA: Control of gene expression by m6A. , 2022, Molecular cell.

[2]  Xinyi Zhou,et al.  METTL3-mediated m6A RNA methylation regulates dorsal lingual epithelium homeostasis , 2022, International Journal of Oral Science.

[3]  K. Ge,et al.  MLL4 mediates differentiation and tumor suppression through ferroptosis , 2021, Science advances.

[4]  Jianjun Chen,et al.  Crosstalk between epitranscriptomic and epigenetic mechanisms in gene regulation , 2021, Trends in genetics : TIG.

[5]  Brian C. Capell,et al.  The METTL3-m6A Epitranscriptome: Dynamic Regulator of Epithelial Development, Differentiation, and Cancer , 2021, Genes.

[6]  Andrew J. Bannister,et al.  Small-molecule inhibition of METTL3 as a strategy against myeloid leukaemia , 2021, Nature.

[7]  M. Esteller,et al.  Towards a druggable epitranscriptome: Compounds that target RNA modifications in cancer , 2020, British journal of pharmacology.

[8]  H. Pasolli,et al.  m6A RNA methylation impacts fate choices during skin morphogenesis , 2020, eLife.

[9]  Zhixiang Zuo,et al.  N6-Methyladenosine co-transcriptionally directs the demethylation of histone H3K9me2 , 2020, Nature Genetics.

[10]  Samie R. Jaffrey,et al.  A Unified Model for the Function of YTHDF Proteins in Regulating m6A-Modified mRNA , 2020, Cell.

[11]  A. Kranz,et al.  The role of SETD1A and SETD1B in development and disease. , 2020, Biochimica et biophysica acta. Gene regulatory mechanisms.

[12]  Huiqing Shen,et al.  Coordination of mRNA and tRNA methylations by TRMT10A , 2020, Proceedings of the National Academy of Sciences.

[13]  Shiqing Ma,et al.  METTL3 Facilitates Oral Squamous Cell Carcinoma Tumorigenesis by Enhancing c-Myc Stability via YTHDF1-Mediated m6A Modification , 2020, Molecular therapy. Nucleic acids.

[14]  S. Mirarab,et al.  Sequence Analysis , 2020, Encyclopedia of Bioinformatics and Computational Biology.

[15]  C. Simpson,et al.  LSD1 Inhibition Promotes Epithelial Differentiation through Derepression of Fate-Determining Transcription Factors , 2019, Cell reports.

[16]  C. Yi,et al.  Landscape and regulation of m6A and m6Am methylome across human and mouse tissues , 2019, bioRxiv.

[17]  C. Has,et al.  A Silent COL17A1 Variant Alters Splicing and Causes Junctional Epidermolysis Bullosa. , 2019, Acta dermato-venereologica.

[18]  S. Wickström,et al.  Epigenetic gene regulation, chromatin structure, and force-induced chromatin remodelling in epidermal development and homeostasis. , 2019, Current opinion in genetics & development.

[19]  Y. Wang,et al.  Mettl3-mediated m6A RNA methylation regulates the fate of bone marrow mesenchymal stem cells and osteoporosis , 2018, Nature Communications.

[20]  M. Änkö,et al.  mRNA Stability Assay Using transcription inhibition by Actinomycin D in Mouse Pluripotent Stem Cells. , 2018, Bio-protocol.

[21]  H. Shimizu,et al.  Life before and beyond blistering: The role of collagen XVII in epidermal physiology , 2018, Experimental dermatology.

[22]  B. Garcia,et al.  KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis , 2018, Genes & development.

[23]  Manolis Kellis,et al.  N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications , 2018, Nature Neuroscience.

[24]  Andrew J. Bannister,et al.  Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control , 2017, Nature.

[25]  F. Watt,et al.  Type XVII collagen coordinates proliferation in the interfollicular epidermis , 2017, eLife.

[26]  Christopher E. Mason,et al.  Charting the unknown epitranscriptome , 2017, Nature Reviews Molecular Cell Biology.

[27]  Ran Elkon,et al.  Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation , 2017, Cell.

[28]  Tao Pan,et al.  RNA modifications and structures cooperate to guide RNA–protein interactions , 2017, Nature Reviews Molecular Cell Biology.

[29]  Chuan He,et al.  Post-transcriptional gene regulation by mRNA modifications , 2016, Nature Reviews Molecular Cell Biology.

[30]  R. Gregory,et al.  The m(6)A Methyltransferase METTL3 Promotes Translation in Human Cancer Cells. , 2016, Molecular cell.

[31]  Howard Y. Chang,et al.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. , 2014, Cell stem cell.

[32]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[33]  A. F. Stewart,et al.  The H3K4 methyltransferase Setd1a is first required at the epiblast stage, whereas Setd1b becomes essential after gastrulation , 2014, Development.

[34]  J. Sundberg,et al.  Molecular Identification of Collagen 17a1 as a Major Genetic Modifier of Laminin Gamma 2 Mutation-Induced Junctional Epidermolysis Bullosa in Mice , 2014, PLoS genetics.

[35]  Michael D. Zeller,et al.  GRHL3/GET1 and Trithorax Group Members Collaborate to Activate the Epidermal Progenitor Differentiation Program , 2012, PLoS genetics.

[36]  R. Wolf,et al.  Structure and function of the epidermis related to barrier properties. , 2012, Clinics in dermatology.

[37]  Nathaniel D. Heintzman,et al.  Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.

[38]  Cheng-Ming Chuong,et al.  Complex hair cycle domain patterns and regenerative hair waves in living rodents. , 2008, The Journal of investigative dermatology.

[39]  E. Fuchs,et al.  At the roots of a never-ending cycle. , 2001, Developmental cell.

[40]  R. Paus Principles of Hair Cycle Control , 1998, The Journal of dermatology.

[41]  E. Lane,et al.  Expression of keratin 14 and 19 mRNA and protein in normal oral epithelia, hairy leukoplakia, tongue biting and white sponge nevus. , 1993, Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology.

[42]  P. Rousselle,et al.  Markers of Epidermal Proliferation and Differentiation , 2015 .

[43]  Ernesta Parisi,et al.  Mucous membrane pemphigoid. , 2013, Dental clinics of North America.

[44]  A. Shyu,et al.  Messenger RNA half-life measurements in mammalian cells. , 2008, Methods in enzymology.