A Belief Propagation algorithm for bias field estimation and image segmentation

Intensity-based image segmentation is often plagued by the spatial intensity inhomogeneities (or non-uniformities) that are caused by the imperfection of the imaging devices and the varying operating conditions, also known as the bias field. We present a graphical model representation of the joint segmentation and bias field estimation problem and propose an iterative solver based on the Belief Propagation (BP) algorithm. The intractable joint inference problem of the original graphical model is decoupled into two MRF-MAP estimation problems and solved by a discrete-valued BP and a Gaussian BP, respectively and iteratively. We validate our method using both simulated and real data and show its connection to some of the classical filtering-based approaches.

[1]  Koenraad Van Leemput,et al.  Automated model-based bias field correction of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[2]  Ron Kikinis,et al.  Markov random field segmentation of brain MR images , 1997, IEEE Transactions on Medical Imaging.

[3]  Bostjan Likar,et al.  A Review of Methods for Correction of Intensity Inhomogeneity in MRI , 2007, IEEE Transactions on Medical Imaging.

[4]  Stephen M. Smith,et al.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm , 2001, IEEE Transactions on Medical Imaging.

[5]  Yair Weiss,et al.  Deriving intrinsic images from image sequences , 2001, Proceedings Eighth IEEE International Conference on Computer Vision. ICCV 2001.

[6]  Michael Brady,et al.  Estimating the bias field of MR images , 1997, IEEE Transactions on Medical Imaging.

[7]  Tomaso Poggio,et al.  Probabilistic Solution of Ill-Posed Problems in Computational Vision , 1987 .

[8]  William T. Freeman,et al.  Understanding belief propagation and its generalizations , 2003 .

[9]  Koenraad Van Leemput,et al.  Automated model-based tissue classification of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.

[10]  Judea Pearl,et al.  Probabilistic reasoning in intelligent systems - networks of plausible inference , 1991, Morgan Kaufmann series in representation and reasoning.

[11]  Edward H. Adelson,et al.  Belief Propagation and Revision in Networks with Loops , 1997 .

[12]  Hugues Benoit-Cattin,et al.  Intensity non-uniformity correction in MRI: Existing methods and their validation , 2006, Medical Image Anal..

[13]  Alin Achim,et al.  18th IEEE International Conference on Image Processing, ICIP 2011, Brussels, Belgium, September 11-14, 2011 , 2011, ICIP.

[14]  J. Besag On the Statistical Analysis of Dirty Pictures , 1986 .

[15]  Olga Veksler,et al.  Fast approximate energy minimization via graph cuts , 2001, Proceedings of the Seventh IEEE International Conference on Computer Vision.

[16]  Moncef Gabbouj,et al.  Multi-dimensional evolutionary feature synthesis for content-based image retrieval , 2011, 2011 18th IEEE International Conference on Image Processing.

[17]  Donald Geman,et al.  Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images , 1984, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[18]  W. Eric L. Grimson,et al.  Adaptive Segmentation of MRI Data , 1995, CVRMed.