Insecticide-resistance mechanism of Plutella xylostella (L.) associated with amino acid substitutions in acetylcholinesterase-1: A molecular docking and molecular dynamics investigation

Acetylcholinesterase-1 (AChE1) is a vital enzyme involved in neurotransmission and represents an attractive insecticide-target for organophosphates and carbamates in Plutella xylostella (Linneaus), an important pest of cruciferous crops worldwide. However, insecticide-resistance often occurs due to mutations, making many organophosphates and carbamates ineffective. In particular, A298S and G324A mutations in AChE1 significantly lower the binding affinity of insecticides. In the present study, the wild-type and mutant AChE1 structures were constructed and their structural stabilities, residual flexibilities were investigated through molecular dynamics simulations. Subsequently, the structural and energetic changes responsible for the insecticide-resistance in AChE1 were analyzed using molecular docking. The results of molecular dynamics simulation showed that the mutant AChE1 shows little structural deviation than the wild-type, indicate the structural instability. Furthermore, the docking results demonstrated that these mutations break the intermolecular hydrogen bonding interactions and thereby affect the prothiofos as well as all insecticide binding. Hence, the results could provide some insights into the resistance mechanism of AChE1 in insecticides binding and helpful in the development of novel insecticides that are less susceptible to insecticide-resistance.

[1]  R. Friesner,et al.  New insights about HERG blockade obtained from protein modeling, potential energy mapping, and docking studies. , 2006, Bioorganic & medicinal chemistry.

[2]  P Rotkiewicz,et al.  A method for the improvement of threading‐based protein models , 1999, Proteins.

[3]  P. Srinivasan,et al.  Exploring the binding properties of agonists interacting with human TGR5 using structural modeling, molecular docking and dynamics simulations , 2015 .

[4]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[5]  H. Feng,et al.  Amino acid substitutions and intron polymorphism of acetylcholinesterase1 associated with mevinphos resistance in diamondback moth, Plutella xylostella (L.). , 2014, Pesticide biochemistry and physiology.

[6]  J. Toutant Insect acetylcholinesterase: Catalytic properties, tissue distribution and molecular forms , 1989, Progress in Neurobiology.

[7]  H. Huang,et al.  Molecular cloning and heterologous expression of a glutathione S-transferase involved in insecticide resistance from the diamondback moth, Plutella xylostella. , 1998, Insect biochemistry and molecular biology.

[8]  G. A. Jeffrey,et al.  An Introduction to Hydrogen Bonding , 1997 .

[9]  S. Larsen,et al.  Properties of the Experimental Crystal Charge Density of Methylammonium Hydrogen Maleate. A Salt with a Very Short Intramolecular O−H−O Hydrogen Bond , 1998 .

[10]  Zhaojun Han,et al.  Mutation in acetylcholinesterase1 associated with triazophos resistance in rice stem borer, Chilo suppressalis (Lepidoptera: Pyralidae). , 2009, Biochemical and biophysical research communications.

[11]  R. Stewart,et al.  EXPERIMENTAL CHARGE DENSITY STUDY OF METHYLAMMONIUM HYDROGEN SUCCINATE MONOHYDRATE. A SALT WITH A VERY SHORT O-H-O HYDROGEN BOND , 1995 .

[12]  W. V. Gunsteren,et al.  Validation of the 53A6 GROMOS force field , 2005, European Biophysics Journal.

[13]  A. W. Schüttelkopf,et al.  PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. , 2004, Acta crystallographica. Section D, Biological crystallography.

[14]  Fumio Matsumura,et al.  Toxicology of Insecticides , 1975, Springer US.

[15]  F. Karch,et al.  Acetylcholinesterase. Two types of modifications confer resistance to insecticide. , 1992, The Journal of biological chemistry.

[16]  S. Sonoda,et al.  Characterization of acephate resistance in the diamondback moth Plutella xylostella , 2010 .

[17]  Ju Il Kim,et al.  Mutation in ace1 associated with an insecticide resistant population of Plutella xylostella , 2012 .

[18]  S. K. Jalali,et al.  Exploring the resistance-developing mutations on Ryanodine receptor in diamondback moth and binding mechanism of its activators using computational study , 2017 .

[19]  Berk Hess,et al.  LINCS: A linear constraint solver for molecular simulations , 1997 .

[20]  Ju Il Kim,et al.  Identification and characterization of ace1-type acetylcholinesterase likely associated with organophosphate resistance in Plutella xylostella , 2005 .

[21]  T. Darden,et al.  Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .

[22]  Michael J Furlong,et al.  Diamondback moth ecology and management: problems, progress, and prospects. , 2013, Annual review of entomology.

[23]  Yang Zhang,et al.  I-TASSER: a unified platform for automated protein structure and function prediction , 2010, Nature Protocols.

[24]  Carsten Kutzner,et al.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.

[25]  P. Kollman,et al.  Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models , 1992 .

[26]  A. Mutero,et al.  Modification of acetylcholinesterase as a mechanism of resistance to insecticides. , 1994 .

[27]  Fukuto Tr Mechanism of action of organophosphorus and carbamate insecticides. , 1990 .

[28]  R. Metcalf Structure-activity relationships for insecticidal carbamates. , 1971, Bulletin of the World Health Organization.

[29]  Jennifer L. Knight,et al.  OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins. , 2016, Journal of chemical theory and computation.

[30]  Kuo-Chen Chou,et al.  Molecular dynamics studies on the interactions of PTP1B with inhibitors: from the first phosphate-binding site to the second one. , 2009, Protein engineering, design & selection : PEDS.

[31]  Huanxiang Liu,et al.  Molecular modeling study on the resistance mechanism of HCV NS3/4A serine protease mutants R155K, A156V and D168A to TMC435. , 2012, Antiviral research.

[32]  Y. Koh,et al.  Mutations of acetylcholinesterase1 contribute to prothiofos-resistance in Plutella xylostella (L.). , 2007, Biochemical and biophysical research communications.

[33]  W N ALDRIDGE,et al.  Some properties of specific cholinesterase with particular reference to the mechanism of inhibition by diethyl p-nitrophenyl thiophosphate (E 605) and analogues. , 1950, The Biochemical journal.

[34]  Haizhen Zhong,et al.  Induced-fit docking studies of the active and inactive states of protein tyrosine kinases. , 2009, Journal of molecular graphics & modelling.

[35]  H. Chi,et al.  Diamondback Moth Resistance to Diazinon and Methomyl in Taiwan , 1978 .

[36]  Chih-Ning Sun,et al.  Glutathione Transferase Isozymes of Diamondback Moth Larvae and Their Role in the Degradation of Some Organophosphorus Insecticides , 1993 .

[37]  K. Abnous,et al.  Conformational switch of insulin-binding aptamer into G-quadruplex induced by K+ and Na+: an experimental and theoretical approach , 2015, Journal of biomolecular structure & dynamics.