Pyramid-Net: Intra-layer Pyramid-Scale Feature Aggregation Network for Retinal Vessel Segmentation

Retinal vessel segmentation plays an important role in the diagnosis of eye-related diseases and biomarkers discovery. Existing works perform multi-scale feature aggregation in an inter-layer manner, namely inter-layer feature aggregation. However, such an approach only fuses features at either a lower scale or a higher scale, which may result in a limited segmentation performance, especially on thin vessels. This discovery motivates us to fuse multi-scale features in each layer, intra-layer feature aggregation, to mitigate the problem. Therefore, in this paper, we propose Pyramid-Net for accurate retinal vessel segmentation, which features intra-layer pyramid-scale aggregation blocks (IPABs). At each layer, IPABs generate two associated branches at a higher scale and a lower scale, respectively, and the two with the main branch at the current scale operate in a pyramid-scale manner. Three further enhancements including pyramid inputs enhancement, deep pyramid supervision, and pyramid skip connections are proposed to boost the performance. We have evaluated Pyramid-Net on three public retinal fundus photography datasets (DRIVE, STARE, and CHASE-DB1). The experimental results show that Pyramid-Net can effectively improve the segmentation performance especially on thin vessels, and outperforms the current state-of-the-art methods on all the adopted three datasets. In addition, our method is more efficient than existing methods with a large reduction in computational cost. We have released the source code at https://github.com/JerRuy/Pyramid-Net.

[1]  Xiaowei Xu,et al.  Pyramid U-Net for Retinal Vessel Segmentation , 2021, ICASSP 2021 - 2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[2]  Gui-Bin Bian,et al.  A hybrid deep segmentation network for fundus vessels via deep-learning framework , 2021, Neurocomputing.

[3]  Yugen Yi,et al.  Residual Spatial Attention Network for Retinal Vessel Segmentation , 2020, ICONIP.

[4]  Yang Tao,et al.  Hard Attention Net for Automatic Retinal Vessel Segmentation , 2020, IEEE Journal of Biomedical and Health Informatics.

[5]  ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) , 2020 .

[6]  Sheng Huang,et al.  CTF-Net: Retinal Vessel Segmentation via Deep Coarse-To-Fine Supervision Network , 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[7]  Yang Li,et al.  Multi-scale fully convolutional network for gland segmentation using three-class classification , 2020, Neurocomputing.

[8]  Yanchun Zhang,et al.  Multi-Stage Attention-Unet for Wireless Capsule Endoscopy Image Bleeding Area Segmentation , 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[9]  Chaoyi Zhang,et al.  Vessel-Net: Retinal Vessel Segmentation Under Multi-path Supervision , 2019, MICCAI.

[10]  Bo Wang,et al.  Dual Encoding U-Net for Retinal Vessel Segmentation , 2019, MICCAI.

[11]  Shuang Yu,et al.  Multi-task Neural Networks with Spatial Activation for Retinal Vessel Segmentation and Artery/Vein Classification , 2019, MICCAI.

[12]  Dhimas Arief Dharmawan,et al.  Residual U-Net for Retinal Vessel Segmentation , 2019, 2019 IEEE International Conference on Image Processing (ICIP).

[13]  Kai Wang,et al.  L-Seg: An end-to-end unified framework for multi-lesion segmentation of fundus images , 2019, Neurocomputing.

[14]  Xin Yang,et al.  A Three-Stage Deep Learning Model for Accurate Retinal Vessel Segmentation , 2019, IEEE Journal of Biomedical and Health Informatics.

[15]  Shenghua Gao,et al.  CE-Net: Context Encoder Network for 2D Medical Image Segmentation , 2019, IEEE Transactions on Medical Imaging.

[16]  Yanchun Zhang,et al.  MDU-Net: multi-scale densely connected U-Net for biomedical image segmentation , 2018, Health Information Science and Systems.

[17]  Xiaohua Hu,et al.  2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) , 2018 .

[18]  Tuan D. Pham,et al.  DUNet: A deformable network for retinal vessel segmentation , 2018, Knowl. Based Syst..

[19]  Farida Cheriet,et al.  A Multitask Learning Architecture for Simultaneous Segmentation of Bright and Red Lesions in Fundus Images , 2018, MICCAI.

[20]  Yanning Zhang,et al.  Multiscale Network Followed Network Model for Retinal Vessel Segmentation , 2018, MICCAI.

[21]  Nima Tajbakhsh,et al.  UNet++: A Nested U-Net Architecture for Medical Image Segmentation , 2018, DLMIA/ML-CDS@MICCAI.

[22]  Vijayan K. Asari,et al.  Nuclei Segmentation with Recurrent Residual Convolutional Neural Networks based U-Net (R2U-Net) , 2018, NAECON 2018 - IEEE National Aerospace and Electronics Conference.

[23]  Hao Chen,et al.  MILD‐Net: Minimal information loss dilated network for gland instance segmentation in colon histology images , 2018, Medical Image Anal..

[24]  Piotr Bilinski,et al.  Dense Decoder Shortcut Connections for Single-Pass Semantic Segmentation , 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[25]  Xin Yang,et al.  Joint Segment-Level and Pixel-Wise Losses for Deep Learning Based Retinal Vessel Segmentation , 2018, IEEE Transactions on Biomedical Engineering.

[26]  Xiaobo Sharon Hu,et al.  Quantization of Fully Convolutional Networks for Accurate Biomedical Image Segmentation , 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[27]  Song Guo,et al.  Deeply supervised neural network with short connections for retinal vessel segmentation , 2018, Int. J. Medical Informatics.

[28]  Yasmin M. Kassim,et al.  Extracting retinal vascular networks using deep learning architecture , 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[29]  Gang Sun,et al.  Squeeze-and-Excitation Networks , 2017, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

[30]  Erik J. Bekkers,et al.  Retinal vessel delineation using a brain-inspired wavelet transform and random forest , 2017, Pattern Recognit..

[31]  Walter J. Scheirer,et al.  Neuron Segmentation Using Deep Complete Bipartite Networks , 2017, MICCAI.

[32]  David B. A. Epstein,et al.  MIMO-Net: A multi-input multi-output convolutional neural network for cell segmentation in fluorescence microscopy images , 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

[33]  Xiaogang Wang,et al.  Pyramid Scene Parsing Network , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[34]  Stephen Lin,et al.  DeepVessel: Retinal Vessel Segmentation via Deep Learning and Conditional Random Field , 2016, MICCAI.

[35]  Jaime S. Cardoso,et al.  Deep Learning and Data Labeling for Medical Applications , 2016, Lecture Notes in Computer Science.

[36]  Christopher Joseph Pal,et al.  The Importance of Skip Connections in Biomedical Image Segmentation , 2016, LABELS/DLMIA@MICCAI.

[37]  Josien P. W. Pluim,et al.  Robust Retinal Vessel Segmentation via Locally Adaptive Derivative Frames in Orientation Scores , 2016, IEEE Transactions on Medical Imaging.

[38]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[39]  Yi Yang,et al.  Attention to Scale: Scale-Aware Semantic Image Segmentation , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[40]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[41]  A. Hofman,et al.  Retinal Microvasculature and Cardiovascular Health in Childhood , 2015, Pediatrics.

[42]  Keshab K. Parhi,et al.  Iterative Vessel Segmentation of Fundus Images , 2015, IEEE Transactions on Biomedical Engineering.

[43]  Trevor Darrell,et al.  Fully convolutional networks for semantic segmentation , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[44]  S. Edward Rajan,et al.  Retinal vessel segmentation employing ANN technique by Gabor and moment invariants-based features , 2014, Appl. Soft Comput..

[45]  Bunyarit Uyyanonvara,et al.  An Ensemble Classification-Based Approach Applied to Retinal Blood Vessel Segmentation , 2012, IEEE Transactions on Biomedical Engineering.

[46]  K. Nakashima,et al.  [The Rotterdam study]. , 2011, Nihon rinsho. Japanese journal of clinical medicine.

[47]  R. Klein,et al.  Retinal vascular tortuosity, blood pressure, and cardiovascular risk factors. , 2011, Ophthalmology.

[48]  Philip J. Morrow,et al.  Algorithms for digital image processing in diabetic retinopathy , 2009, Comput. Medical Imaging Graph..

[49]  Rangaraj M. Rangayyan,et al.  Detection of blood vessels in the retina with multiscale Gabor filters , 2008, J. Electronic Imaging.

[50]  Elisa Ricci,et al.  Retinal Blood Vessel Segmentation Using Line Operators and Support Vector Classification , 2007, IEEE Transactions on Medical Imaging.

[51]  A. Hofman,et al.  Retinal vessel diameters and risk of stroke , 2006, Neurology.

[52]  J. Witteman,et al.  Retinal Vessel Diameters and Risk of Hypertension: The Rotterdam Study , 2006, Hypertension.

[53]  Roberto Marcondes Cesar Junior,et al.  Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification , 2005, IEEE Transactions on Medical Imaging.

[54]  Paul Mitchell,et al.  Retinal vessel diameter and open-angle glaucoma: the Blue Mountains Eye Study. , 2005, Ophthalmology.

[55]  Bram van Ginneken,et al.  Comparative study of retinal vessel segmentation methods on a new publicly available database , 2004, SPIE Medical Imaging.

[56]  Max A. Viergever,et al.  Ridge-based vessel segmentation in color images of the retina , 2004, IEEE Transactions on Medical Imaging.

[57]  J. Slakter,et al.  RETINAL ANGIOMATOUS PROLIFERATION IN AGE–RELATED MACULAR DEGENERATION , 2001, Retina.

[58]  B. Jaramaz,et al.  Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention , 2000 .

[59]  A.D. Hoover,et al.  Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response , 2000, IEEE Transactions on Medical Imaging.

[60]  C. Sinthanayothin,et al.  Automated localisation of the optic disc, fovea, and retinal blood vessels from digital colour fundus images , 1999, The British journal of ophthalmology.

[61]  P F Sharp,et al.  An image-processing strategy for the segmentation and quantification of microaneurysms in fluorescein angiograms of the ocular fundus. , 1996, Computers and biomedical research, an international journal.

[62]  Michael H. Goldbaum,et al.  An Image Processing System For Automatic Retina Diagnosis , 1988, Photonics West - Lasers and Applications in Science and Engineering.

[63]  2019 IEEE International Conference on Image Processing (ICIP) , 2019 .

[64]  Matthew B. Blaschko,et al.  A Discriminatively Trained Fully Connected Conditional Random Field Model for Blood Vessel Segmentation in Fundus Images , 2017, IEEE Transactions on Biomedical Engineering.

[65]  Tianfu Wang,et al.  A Cross-Modality Learning Approach for Vessel Segmentation in Retinal Images , 2016, IEEE Transactions on Medical Imaging.

[66]  R. Howe,et al.  17th International Conference on Medical Image Computing and Computer-Assisted Intervention. , 2014, Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention.

[67]  Geoffrey E. Hinton,et al.  Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition-' Washington , D . C . , June , 1983 OPTIMAL PERCEPTUAL INFERENCE , 2011 .

[68]  G. Lang,et al.  [Retinal angiomatous proliferation in age-related macular degeneration]. , 2006, Klinische Monatsblatter fur Augenheilkunde.

[69]  IEEE conference on computer vision and pattern recognition , 2000, Proceedings IEEE Conference on Computer Vision and Pattern Recognition. CVPR 2000 (Cat. No.PR00662).

[70]  Alan Murray,et al.  International Conference on Neural Information Processing, Dunedin, New Zealand , 1997 .