Multilayered control of gene expression by stress‐activated protein kinases
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[1] L Bibbs,et al. A MAP kinase targeted by endotoxin and hyperosmolarity in mammalian cells. , 1994, Science.
[2] Eulàlia de Nadal,et al. The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes , 2004, Nature.
[3] N. Hannett,et al. Activated Signal Transduction Kinases Frequently Occupy Target Genes , 2006, Science.
[4] Josep Clotet,et al. The stress-activated protein kinase Hog1 mediates S phase delay in response to osmostress. , 2009, Molecular biology of the cell.
[5] K. Struhl,et al. The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress. , 2006, Molecular cell.
[6] L. Mahadevan,et al. Protein Kinases Seek Close Encounters with Active Genes , 2006, Science.
[7] Michael Grunstein,et al. Genome-wide patterns of histone modifications in yeast , 2006, Nature Reviews Molecular Cell Biology.
[8] Cizhong Jiang,et al. Nucleosome positioning and gene regulation: advances through genomics , 2009, Nature Reviews Genetics.
[9] M. Grunstein,et al. Functions of site-specific histone acetylation and deacetylation. , 2007, Annual review of biochemistry.
[10] M. Gustin,et al. MAP kinases and the adaptive response to hypertonicity: functional preservation from yeast to mammals. , 2004, American journal of physiology. Renal physiology.
[11] G. Ammerer,et al. Kinase activity-dependent nuclear export opposes stress-induced nuclear accumulation and retention of Hog1 mitogen-activated protein kinase in the budding yeast Saccharomyces cerevisiae. , 1999, Molecular biology of the cell.
[12] G. Stoecklin,et al. Control of mRNA decay by phosphorylation of tristetraprolin. , 2008, Biochemical Society transactions.
[13] J. Clotet,et al. Control of cell cycle in response to osmostress: lessons from yeast. , 2007, Methods in enzymology.
[14] Bing Li,et al. Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. , 2007, Genes & development.
[15] Eulàlia de Nadal,et al. Osmostress‐induced transcription by Hot1 depends on a Hog1‐mediated recruitment of the RNA Pol II , 2003, The EMBO journal.
[16] N. Jones,et al. Regulation of Schizosaccharomyces pombe Atf1 Protein Levels by Sty1-mediated Phosphorylation and Heterodimerization with Pcr1* , 2007, Journal of Biological Chemistry.
[17] A. Gasch,et al. The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress , 2009, Genome Biology.
[18] M. Yamamoto,et al. Schizosaccharomyces pombe pcr1+ encodes a CREB/ATF protein involved in regulation of gene expression for sexual development , 1996, Molecular and cellular biology.
[19] D. Nilsson,et al. Fission Yeast Mitogen-Activated Protein Kinase Sty1 Interacts with Translation Factors , 2007, Eukaryotic Cell.
[20] E. Lander,et al. Remodeling of yeast genome expression in response to environmental changes. , 2001, Molecular biology of the cell.
[21] Y. Uesono,et al. Transient Inhibition of Translation Initiation by Osmotic Stress* , 2002, The Journal of Biological Chemistry.
[22] E. Klipp,et al. Integrative model of the response of yeast to osmotic shock , 2005, Nature Biotechnology.
[23] E. Seto,et al. The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men , 2008, Nature Reviews Molecular Cell Biology.
[24] L. Serrano,et al. Engineering stability in gene networks by autoregulation , 2000, Nature.
[25] E. de Nadal,et al. Regulation of the Sko1 transcriptional repressor by the Hog1 MAP kinase in response to osmotic stress , 2001, The EMBO journal.
[26] Audrey P Gasch,et al. Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. , 2008, Molecular biology of the cell.
[27] D. E. Levin,et al. Yeast Mpk1 Mitogen-Activated Protein Kinase Activates Transcription through Swi4/Swi6 by a Noncatalytic Mechanism That Requires Upstream Signal , 2008, Molecular and Cellular Biology.
[28] C. Chow,et al. Proteins Kinases: Chromatin-Associated Enzymes? , 2006, Cell.
[29] John T. Lis,et al. Defining mechanisms that regulate RNA polymerase II transcription in vivo , 2009, Nature.
[30] Matthew Brook,et al. Edinburgh Research Explorer Mitogen-activated protein kinase-activated protein kinase 2 regulates tumor necrosis factor mRNA stability and translation mainly by altering tristetraprolin expression, stability, and binding to adenine/uridine-rich element , 2022 .
[31] N. Friedman,et al. Structure and function of a transcriptional network activated by the MAPK Hog1 , 2008, Nature Genetics.
[32] L. Ringrose. Faculty Opinions recommendation of p38 MAPK signaling regulates recruitment of Ash2L-containing methyltransferase complexes to specific genes during differentiation. , 2007 .
[33] S. Hohmann. Osmotic Stress Signaling and Osmoadaptation in Yeasts , 2002, Microbiology and Molecular Biology Reviews.
[34] Eulàlia de Nadal,et al. Mucins, osmosensors in eukaryotic cells? , 2007, Trends in cell biology.
[35] S. Tapscott,et al. p38 MAPK signaling regulates recruitment of Ash2L-containing methyltransferase complexes to specific genes during differentiation , 2007, Nature Structural &Molecular Biology.
[36] Ian M. Willis,et al. Sub1 Functions in Osmoregulation and in Transcription by both RNA Polymerases II and III , 2009, Molecular and Cellular Biology.
[37] M Teige,et al. Rck2, a member of the calmodulin-protein kinase family, links protein synthesis to high osmolarity MAP kinase signaling in budding yeast , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[38] P. Russell,et al. Activation and regulation of the Spc1 stress-activated protein kinase in Schizosaccharomyces pombe , 1996, Molecular and cellular biology.
[39] S. Peltz,et al. Regulated ARE-mediated mRNA decay in Saccharomyces cerevisiae. , 2001, Molecular cell.
[40] J. Avruch,et al. Mammalian mitogen-activated protein kinase signal transduction pathways activated by stress and inflammation. , 2001, Physiological reviews.
[41] Stefan Hohmann,et al. Yeast osmoregulation. , 2007, Methods in enzymology.
[42] A. Vancura,et al. Plc1p is required for SAGA recruitment and derepression of Sko1p-regulated genes. , 2007, Molecular biology of the cell.
[43] Shona Murphy,et al. Cracking the RNA polymerase II CTD code. , 2008, Trends in genetics : TIG.
[44] A. Schmitt,et al. Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[45] N. Jones,et al. Fission Yeast MAP Kinase Sty1 Is Recruited to Stress-induced Genes* , 2008, Journal of Biological Chemistry.
[46] J. Thevelein,et al. The Transcriptional Response of Saccharomyces cerevisiae to Osmotic Shock , 2000, The Journal of Biological Chemistry.
[47] S. Kadam,et al. A Positive Regulatory Role for the mSin3A-HDAC Complex in Pluripotency through Nanog and Sox2* , 2009, Journal of Biological Chemistry.
[48] J. Krebs,et al. The role of chromatin structure in regulating stress-induced transcription in Saccharomyces cerevisiae. , 2006, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[49] F. Posas,et al. Regulation of gene expression in response to osmostress by the yeast stress-activated protein kinase Hog1 , 2007 .
[50] P. Russell,et al. Conjugation, meiosis, and the osmotic stress response are regulated by Spc1 kinase through Atf1 transcription factor in fission yeast. , 1996, Genes & development.
[51] Dongrong Chen,et al. Multiple pathways differentially regulate global oxidative stress responses in fission yeast. , 2008, Molecular biology of the cell.
[52] John T. Lis,et al. Breaking barriers to transcription elongation , 2006, Nature Reviews Molecular Cell Biology.
[53] Paola Briata,et al. p38-dependent phosphorylation of the mRNA decay-promoting factor KSRP controls the stability of select myogenic transcripts. , 2005, Molecular cell.
[54] A. Brazma,et al. Global transcriptional responses of fission yeast to environmental stress. , 2003, Molecular biology of the cell.
[55] Nevan J. Krogan,et al. Cotranscriptional Set 2 Methylation of Histone H 3 Lysine 36 Recruits a Repressive Rpd 3 Complex , 2005 .
[56] C. Tsang,et al. Nutrient regulates Tor1 nuclear localization and association with rDNA promoter , 2006, Nature.
[57] K. Struhl,et al. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. , 2002, Molecular cell.
[58] D. Stillman,et al. Different Genetic Functions for the Rpd3(L) and Rpd3(S) Complexes Suggest Competition between NuA4 and Rpd3(S) , 2008, Molecular and Cellular Biology.
[59] T. Toda,et al. The Atf1 transcription factor is a target for the Sty1 stress-activated MAP kinase pathway in fission yeast. , 1996, Genes & development.
[60] Faraz Farooq,et al. p38 Mitogen-activated protein kinase stabilizes SMN mRNA through RNA binding protein HuR. , 2009, Human molecular genetics.
[61] Tatsuya Maeda,et al. A two-component system that regulates an osmosensing MAP kinase cascade in yeast , 1994, Nature.
[62] L. Mahadevan,et al. Stress-activated MAP Kinases in Chromatin and Transcriptional Complexes , 2007 .
[63] K. Struhl,et al. Aca1 and Aca2, ATF/CREB Activators in Saccharomyces cerevisiae, Are Important for Carbon Source Utilization but Not the Response to Stress , 2000, Molecular and Cellular Biology.
[64] Timothy C Elston,et al. Control of MAPK Specificity by Feedback Phosphorylation of Shared Adaptor Protein Ste50* , 2008, Journal of Biological Chemistry.
[65] G. Ammerer,et al. Stress-induced map kinase Hog1 is part of transcription activation complexes. , 2001, Molecular cell.
[66] C. Simone,et al. p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci , 2004, Nature Genetics.
[67] P. Muñoz-Cánoves,et al. Transcriptional regulation by the p38 MAPK signaling pathway in mammalian cells , 2007 .
[68] I. Herskowitz,et al. Unique and redundant roles for HOG MAPK pathway components as revealed by whole-genome expression analysis. , 2003, Molecular biology of the cell.
[69] Bing Li,et al. The Role of Chromatin during Transcription , 2007, Cell.
[70] Ianessa Morantte,et al. Functional interdependence at the chromatin level between the MKK6/p38 and IGF1/PI3K/AKT pathways during muscle differentiation. , 2007, Molecular cell.
[71] B. Cairns. The logic of chromatin architecture and remodelling at promoters , 2009, Nature.
[72] E. Ballestar,et al. E47 phosphorylation by p38 MAPK promotes MyoD/E47 association and muscle‐specific gene transcription , 2005, The EMBO journal.
[73] Dirk Eick,et al. Transcribing RNA Polymerase II Is Phosphorylated at CTD Residue Serine-7 , 2007, Science.
[74] Steven J. M. Jones,et al. Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation , 2007, PLoS biology.
[75] J. Bähler,et al. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation , 2008, Nature Reviews Genetics.
[76] J. Thorner,et al. Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae. , 2007, Biochimica et biophysica acta.
[77] Christoph H. Borchers,et al. A Systems-Biology Analysis of Feedback Inhibition in the Sho1 Osmotic-Stress-Response Pathway , 2007, Current Biology.
[78] Jerry L. Workman,et al. Mechanism of Transcription Factor Recruitment by Acidic Activators* , 2005, Journal of Biological Chemistry.
[79] Ioannis Xenarios,et al. Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases , 2002, Cell.
[80] K. Struhl,et al. Genome-wide location analysis of the stress-activated MAP kinase Hog1 in yeast. , 2006, Methods.
[81] O. Nerman,et al. mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. , 2009, RNA.
[82] K. Irie,et al. Purification and Identification of a Major Activator for p38 from Osmotically Shocked Cells , 1996, The Journal of Biological Chemistry.
[83] T. Toda,et al. Regulation of the fission yeast transcription factor Pap1 by oxidative stress: requirement for the nuclear export factor Crm1 (Exportin) and the stress-activated MAP kinase Sty1/Spc1. , 1998, Genes & development.
[84] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[85] R. Tomar,et al. Histone Deacetylases RPD3 and HOS2 Regulate the Transcriptional Activation of DNA Damage-Inducible Genes , 2007, Molecular and Cellular Biology.
[86] Li Li,et al. Mitogen-induced recruitment of ERK and MSK to SRE promoter complexes by ternary complex factor Elk-1 , 2008, Nucleic acids research.
[87] J. Thorner,et al. Stress resistance and signal fidelity independent of nuclear MAPK function , 2008, Proceedings of the National Academy of Sciences.
[88] Gustav Ammerer,et al. Cooperation between the INO80 Complex and Histone Chaperones Determines Adaptation of Stress Gene Transcription in the Yeast Saccharomyces cerevisiae , 2009, Molecular and Cellular Biology.
[89] Mark B Gerstein,et al. Dynamic and complex transcription factor binding during an inducible response in yeast. , 2009, Genes & development.
[90] Glòria Mas,et al. Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes , 2009, The EMBO journal.
[91] S. Schreiber,et al. Genomewide studies of histone deacetylase function in yeast. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[92] Bing Li,et al. Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription , 2005, Cell.
[93] A. Nebreda,et al. Regulation of Tumorigenesis by p38 α MAP Kinase , 2007 .
[94] M. Gaestel,et al. MK2 and MK3--a pair of isoenzymes? , 2008, Frontiers in bioscience : a journal and virtual library.
[95] A. Oudenaarden,et al. A Systems-Level Analysis of Perfect Adaptation in Yeast Osmoregulation , 2009, Cell.
[96] A. Gasch. Comparative genomics of the environmental stress response in ascomycete fungi , 2007, Yeast.
[97] Oscar Fernandez-Capetillo,et al. p38 Mitogen-Activated Protein Kinase- and HuR-Dependent Stabilization of p21Cip1 mRNA Mediates the G1/S Checkpoint , 2009, Molecular and Cellular Biology.
[98] F. Posas,et al. Targeting the MEF2-Like Transcription Factor Smp1 by the Stress-Activated Hog1 Mitogen-Activated Protein Kinase , 2003, Molecular and Cellular Biology.
[99] Nevan J. Krogan,et al. Cotranscriptional Set2 Methylation of Histone H3 Lysine 36 Recruits a Repressive Rpd3 Complex , 2005, Cell.
[100] P. Russell,et al. Discrete roles of the Spc1 kinase and the Atf1 transcription factor in the UV response of Schizosaccharomyces pombe , 1997, Molecular and cellular biology.
[101] M. Beato,et al. Induction of progesterone target genes requires activation of Erk and Msk kinases and phosphorylation of histone H3. , 2006, Molecular cell.
[102] S. Peltz,et al. p38 Mitogen-Activated Protein Kinase/Hog1p Regulates Translation of the AU-Rich-Element-Bearing MFA2 Transcript , 2005, Molecular and Cellular Biology.
[103] Bing Li,et al. Combined Action of PHD and Chromo Domains Directs the Rpd3S HDAC to Transcribed Chromatin , 2007, Science.
[104] E. Wagner,et al. Signal integration by JNK and p38 MAPK pathways in cancer development , 2009, Nature Reviews Cancer.
[105] A. Marchler-Bauer,et al. The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). , 1996, The EMBO journal.
[106] Dirk Eick,et al. Serine-7 of the RNA Polymerase II CTD Is Specifically Required for snRNA Gene Expression , 2007, Science.
[107] K. Struhl,et al. ACR1, a yeast ATF/CREB repressor. , 1992, Molecular and cellular biology.
[108] Kazuo Tatebayashi,et al. Transmembrane mucins Hkr1 and Msb2 are putative osmosensors in the SHO1 branch of yeast HOG pathway , 2007, The EMBO journal.
[109] R. Morse,et al. Direct Role for the Rpd3 Complex in Transcriptional Induction of the Anaerobic DAN/TIR Genes in Yeast , 2007, Molecular and Cellular Biology.
[110] Francesc Posas,et al. Multiple Levels of Control Regulate the Yeast cAMP-response Element-binding Protein Repressor Sko1p in Response to Stress* , 2001, The Journal of Biological Chemistry.
[111] P. Sunnerhagen,et al. Rck2 Kinase Is a Substrate for the Osmotic Stress-Activated Mitogen-Activated Protein Kinase Hog1 , 2000, Molecular and Cellular Biology.
[112] J. Thevelein,et al. Osmotic Stress-Induced Gene Expression in Saccharomyces cerevisiae Requires Msn1p and the Novel Nuclear Factor Hot1p , 1999, Molecular and Cellular Biology.
[113] D. Hirata,et al. Identification of Tup1 and Cyc8 mutations defective in the responses to osmotic stress. , 2008, Biochemical and biophysical research communications.
[114] S. Berger,et al. Histone H3 phosphorylation can promote TBP recruitment through distinct promoter‐specific mechanisms , 2005, The EMBO journal.
[115] B. Nadal-Ginard,et al. Human myocyte-specific enhancer factor 2 comprises a group of tissue-restricted MADS box transcription factors. , 1992, Genes & development.
[116] F. Posas,et al. A human homolog of the yeast Ssk2/Ssk22 MAP kinase kinase kinases, MTK1, mediates stress‐induced activation of the p38 and JNK pathways , 1997, The EMBO journal.
[117] Kevin Struhl,et al. MAP Kinase-Mediated Stress Relief that Precedes and Regulates the Timing of Transcriptional Induction , 2004, Cell.
[118] J. Heyman,et al. The Transcriptional Response of Yeast to Saline Stress* , 2000, The Journal of Biological Chemistry.
[119] Ricard Solé,et al. Dynamic Signaling in the Hog1 MAPK Pathway Relies on High Basal Signal Transduction , 2009, Science Signaling.
[120] Joaquín Moreno,et al. Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. , 2009, RNA.
[121] J. Yates,et al. RNA‐binding protein Csx1 mediates global control of gene expression in response to oxidative stress , 2003, The EMBO journal.
[122] H. Ronne,et al. Yeast SKO1 gene encodes a bZIP protein that binds to the CRE motif and acts as a repressor of transcription. , 1992, Nucleic acids research.
[123] Jerome T. Mettetal,et al. The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae , 2008, Science.
[124] M. Sohrmann,et al. Selective Requirement for SAGA in Hog1-Mediated Gene Expression Depending on the Severity of the External Osmostress Conditions , 2007, Molecular and Cellular Biology.
[125] S. Chellappan. HOG on the Promoter: Regulation of the Osmotic Stress Response , 2001, Science's STKE.