Nuclear Outsourcing of RNA Interference Components to Human Mitochondria
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Arnold Munnich | Silvia Rüberg | Nicolas Cagnard | A. Munnich | S. Hanein | S. Lyonnet | S. Rüberg | S. Bandiera | N. Cagnard | M. Girard | A. Henrion-Caude | D. Chrétien | Simonetta Bandiera | Stanislas Lyonnet | Alexandra Henrion-Caude | Dominique Chrétien | Muriel Girard | Sylvain Hanein
[1] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[2] Qinxi Li,et al. Axin determines cell fate by controlling the p53 activation threshold after DNA damage , 2009, Nature Cell Biology.
[3] E. Chan,et al. Disruption of GW bodies impairs mammalian RNA interference , 2005, Nature Cell Biology.
[4] William Ritchie,et al. mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets , 2010, Bioinform..
[5] H T van der Voort,et al. Partial colocalization of glucocorticoid and mineralocorticoid receptors in discrete compartments in nuclei of rat hippocampus neurons. , 1996, Journal of cell science.
[6] J. Martinou,et al. Bax Is Present as a High Molecular Weight Oligomer/Complex in the Mitochondrial Membrane of Apoptotic Cells* , 2001, The Journal of Biological Chemistry.
[7] John M. Walker,et al. The Proteomics Protocols Handbook , 2005, Humana Press.
[8] Sean Ekins,et al. Pathway mapping tools for analysis of high content data. , 2007, Methods in molecular biology.
[9] Archie L. Smith. [13] Preparation, properties, and conditions for assay of mitochondria: Slaughterhouse material, small-scale , 1967 .
[10] J. N. Topper,et al. Secondary structure of the RNA component of a nuclear/mitochondrial ribonucleoprotein. , 1990, The Journal of biological chemistry.
[11] Jeremy Adler,et al. Recent review on colocalization seem to misunderstand the Pearson correlation coefficient. , 2007, Journal of microscopy.
[12] E. Wentzel,et al. A Hexanucleotide Element Directs MicroRNA Nuclear Import , 2007, Science.
[13] F. Legeai,et al. Predotar: A tool for rapidly screening proteomes for N‐terminal targeting sequences , 2004, Proteomics.
[14] C. Gustafsson,et al. DNA replication and transcription in mammalian mitochondria. , 2007, Annual review of biochemistry.
[15] D. Bartel,et al. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. , 2005, RNA.
[16] Hui Zhou,et al. Deep Sequencing of Human Nuclear and Cytoplasmic Small RNAs Reveals an Unexpectedly Complex Subcellular Distribution of miRNAs and tRNA 3′ Trailers , 2010, PloS one.
[17] P. Lasko,et al. Hsp90 regulates the function of argonaute 2 and its recruitment to stress granules and P-bodies. , 2009, Molecular biology of the cell.
[18] A. Sandelin,et al. Hidden layers of human small RNAs , 2008, BMC Genomics.
[19] Gajendra P. S. Raghava,et al. ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST , 2004, Nucleic Acids Res..
[20] Thoru Pederson,et al. Regulatory RNAs derived from transfer RNA? , 2010, RNA.
[21] R. Martin,et al. RNA delivery into mitochondria. , 2001, Advanced drug delivery reviews.
[22] Gregory J. Hannon,et al. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies , 2005, Nature Cell Biology.
[23] Anthony K. L. Leung,et al. Quantitative analysis of Argonaute protein reveals microRNA-dependent localization to stress granules , 2006, Proceedings of the National Academy of Sciences.
[24] Yvonne Tay,et al. A Pattern-Based Method for the Identification of MicroRNA Binding Sites and Their Corresponding Heteroduplexes , 2006, Cell.
[25] T. Tuschl,et al. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.
[26] J. M. Thomson,et al. Argonaute2 Is the Catalytic Engine of Mammalian RNAi , 2004, Science.
[27] Thoru Pederson,et al. MicroRNAs with a nucleolar location. , 2009, RNA.
[28] R. Hartmann,et al. Intricacies and surprises of nuclear-mitochondrial co-evolution. , 2006, The Biochemical journal.
[29] Xiaowei Wang. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. , 2008, RNA.
[30] P Vincens,et al. Computational method to predict mitochondrially imported proteins and their targeting sequences. , 1996, European journal of biochemistry.
[31] Kevin Kim,et al. Silencing by small RNAs is linked to endosomal trafficking , 2009, Nature Cell Biology.
[32] D. Chang,et al. A mammalian mitochondrial RNA processing activity contains nucleus-encoded RNA. , 1987, Science.
[33] Hsien-Da Huang,et al. RegRNA: an integrated web server for identifying regulatory RNA motifs and elements , 2006, Nucleic Acids Res..
[34] K. Chaudhuri,et al. Upregulation of human mitochondrial NADH dehydrogenase subunit 5 in intestinal epithelial cells is modulated by Vibrio cholerae pathogenesis , 2005, FEBS letters.
[35] S. Duvezin-Caubet,et al. Mammalian mitochondria have the innate ability to import tRNAs by a mechanism distinct from protein import , 2008, Proceedings of the National Academy of Sciences.
[36] T. Hobman,et al. GERp95, a membrane-associated protein that belongs to a family of proteins involved in stem cell differentiation. , 1999, Molecular biology of the cell.
[37] T. W. O'brien,et al. The translation system of mammalian mitochondria. , 1990, Biochimica et biophysica acta.
[38] H. Blau,et al. Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies , 2005, Nature Cell Biology.
[39] Christoph Rodak,et al. MirZ: an integrated microRNA expression atlas and target prediction resource , 2009, Nucleic Acids Res..
[40] G. Meister,et al. Proteomic and functional analysis of Argonaute‐containing mRNA–protein complexes in human cells , 2007, EMBO reports.
[41] G. Meister,et al. Identification of Human microRNA Targets From Isolated Argonaute Protein Complexes , 2007, RNA biology.
[42] A. Bosio,et al. Isolation of functional pure mitochondria by superparamagnetic microbeads. , 2009, Analytical biochemistry.
[43] R. Ketting. The many faces of RNAi. , 2011, Developmental cell.
[44] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[45] J. Richardson,et al. Subcellular partitioning of MRP RNA assessed by ultrastructural and biochemical analysis , 1994, The Journal of cell biology.
[46] G. Meister,et al. The Argonaute protein family , 2008, Genome Biology.
[47] I. Tarassov,et al. Two distinct structural elements of 5S rRNA are needed for its import into human mitochondria. , 2008, RNA.
[48] Stephan H. Bernhart,et al. Strategies for measuring evolutionary conservation of RNA secondary structures , 2008, BMC Bioinformatics.
[49] S. Cox,et al. Evidence that miRNAs are different from other RNAs , 2006, Cellular and Molecular Life Sciences CMLS.
[50] M. Tan,et al. Cloning and Identification of Hepatocellular Carcinoma Down-regulated Mitochondrial Carrier Protein, a Novel Liver-specific Uncoupling Protein* , 2004, Journal of Biological Chemistry.
[51] Y. Asmann,et al. Skeletal Muscle Mitochondrial Functions, Mitochondrial DNA Copy Numbers, and Gene Transcript Profiles in Type 2 Diabetic and Nondiabetic Subjects at Equal Levels of Low or High Insulin and Euglycemia , 2006, Diabetes.
[52] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[53] S. Carr,et al. A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology , 2008, Cell.
[54] Q. Cui,et al. An Analysis of Human MicroRNA and Disease Associations , 2008, PloS one.
[55] G. Meister,et al. Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells , 2008, Nucleic acids research.
[56] Michael W Pfaffl,et al. RNA integrity and the effect on the real-time qRT-PCR performance. , 2006, Molecular aspects of medicine.
[57] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[58] Y. Tomari,et al. Making RISC. , 2010, Trends in biochemical sciences.
[59] M. Roberti,et al. Mitochondrial localization of human FAD synthetase isoform 1. , 2010, Mitochondrion.
[60] G. Lenaers,et al. The human dynamin‐related protein OPA1 is anchored to the mitochondrial inner membrane facing the inter‐membrane space , 2002, FEBS letters.
[61] F. Sanger,et al. Sequence and organization of the human mitochondrial genome , 1981, Nature.
[62] J. N. Spelbrink,et al. The mitochondria of cultured mammalian cells: I. Analysis by immunofluorescence microscopy, histochemistry, subcellular fractionation, and cell fusion. , 2007, Methods in molecular biology.
[63] E. Schon,et al. Evidence for the presence of 5S rRNA in mammalian mitochondria. , 1998, Molecular biology of the cell.
[64] S. Brunak,et al. Locating proteins in the cell using TargetP, SignalP and related tools , 2007, Nature Protocols.
[65] Z. Mourelatos,et al. Human mitochondrial tRNAMet is exported to the cytoplasm and associates with the Argonaute 2 protein. , 2005, RNA.
[66] Ivo L. Hofacker,et al. Vienna RNA secondary structure server , 2003, Nucleic Acids Res..
[67] C. Steer,et al. MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis , 2009, RNA biology.
[68] F. Cordelières,et al. A guided tour into subcellular colocalization analysis in light microscopy , 2006, Journal of microscopy.
[69] Stijn van Dongen,et al. miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..
[70] W. Filipowicz,et al. Regulation of mRNA translation and stability by microRNAs. , 2010, Annual review of biochemistry.
[71] D. Corey,et al. Involvement of AGO1 and AGO2 in mammalian transcriptional silencing , 2006, Nature Structural &Molecular Biology.
[72] Mihaela Zavolan,et al. Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells , 2006, Nucleic acids research.
[73] Michael Lynch,et al. Mutation Pressure and the Evolution of Organelle Genomic Architecture , 2006, Science.
[74] Hui Zhou,et al. starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data , 2010, Nucleic Acids Res..
[75] A. Shyu,et al. Ago-TNRC6 complex triggers microRNA-mediated mRNA decay by promoting biphasic deadenylation followed by decapping , 2009, Nature Structural &Molecular Biology.
[76] R D Appel,et al. Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.