Re-awakening the brain: Forcing transitions in disorders of consciousness by external in silico perturbation

A fundamental challenge in neuroscience is accurately defining brain states and predicting how and where to perturb the brain to force a transition. The ability to promote a transition from one brain state to another by externally driven stimulation could significantly impact rehabilitation and treatments for patients suffering from complex brain injury cases. Thus, it is crucial to find therapeutic interventions able to re-balance the dynamics of brain disorders towards more healthy regimes. Here, we investigated resting-state fMRI data of patients suffering from disorders of consciousness (DoC) after coma (minimally conscious and unresponsive wakefulness states) and healthy controls. We applied model-free and model-based approaches to help elucidate the underlying brain mechanisms of patients with DoC. The model-free approach allowed us to characterize brain states in DoC and healthy controls as a probabilistic metastable substate (PMS) space. The PMS of each group was characterized by a repertoire of unique patterns (i.e., metastable substates) with different probabilities of occurrence. In the model-based approach, we adjusted the PMS of each DoC group to a causal whole-brain model. This allowed us to explore optimal strategies for promoting a transition to the PMS of the control group by applying off-line in silico probing. Furthermore, this approach enabled us to evaluate the impact of all possible local perturbations in terms of their global effects and sensitivity to stimulation, which is a biomarker providing a deeper understanding of the mechanisms underlying DoC. Our results show that transitions from DoC to more healthy regimes were obtained in a synchronous protocol, in which areas from the motor and subcortical networks were the most sensitive to perturbation. This motivates further work to continue understanding brain function and treatments of disorders of consciousness by external stimulation. Author summary We studied disorders of consciousness by defining a brain state as a repertoire of metastable substates with different probabilities of occurrence. We created whole-brain computational models of DoC to uncover the causal mechanisms underlying recovery. These models allowed us to transition from DoC to a control healthy state by studying the effects of artificial individual local perturbations under different protocol regimes. We demonstrated successful transitions in the synchronization protocol and showed that the most sensitive areas were located in the motor network and subcortical regions. We believe this could be very valuable for developing clinical treatments and has a great deal for future therapies.

[1]  Steven Laureys,et al.  Whole‐brain analyses indicate the impairment of posterior integration and thalamo‐frontotemporal broadcasting in disorders of consciousness , 2023, Human brain mapping.

[2]  M. Kringelbach,et al.  Using in silico perturbational approach to identify critical areas in schizophrenia , 2022, bioRxiv.

[3]  G. Northoff,et al.  Beyond noise to function: reframing the global brain activity and its dynamic topography , 2022, Communications biology.

[4]  M. Kringelbach,et al.  Dynamic sensitivity analysis: Defining personalised strategies to drive brain state transitions via whole brain modelling , 2022, Computational and structural biotechnology journal.

[5]  M. Mørup,et al.  Psilocybin modulation of time-varying functional connectivity is associated with plasma psilocin and subjective effects , 2022, NeuroImage.

[6]  Steven Laureys,et al.  Low-dimensional organization of global brain states of reduced consciousness , 2022, bioRxiv.

[7]  R. Lambiotte,et al.  Metastable oscillatory modes emerge from synchronization in the brain spacetime connectome , 2022, Communications Physics.

[8]  G. Deco,et al.  Disruption in structural–functional network repertoire and time-resolved subcortical fronto-temporoparietal connectivity in disorders of consciousness , 2021, bioRxiv.

[9]  M. Kringelbach,et al.  The effect of external stimulation on functional networks in the aging healthy human brain , 2021, bioRxiv.

[10]  Steven Laureys,et al.  Unifying turbulent dynamics framework distinguishes different brain states , 2021, Communications Biology.

[11]  Z. Khismatullina,et al.  Conflict of interest: the authors declare no conflict of interest. , 2021, Journal Biomed.

[12]  Weihao Zheng,et al.  Individualized Thalamic Parcellation Reveals Alterations in Shape and Microstructure of Thalamic Nuclei in Patients with Disorder of Consciousness , 2021, Cerebral cortex communications.

[13]  N. Schiff,et al.  Recovery from disorders of consciousness: mechanisms, prognosis and emerging therapies , 2020, Nature Reviews Neurology.

[14]  M. Kringelbach,et al.  Loss of consciousness reduces the stability of brain hubs and the heterogeneity of brain dynamics , 2020, Communications Biology.

[15]  Gustavo Deco,et al.  Brain States and Transitions: Insights from Computational Neuroscience. , 2020, Cell reports.

[16]  G. Deco,et al.  Whole-brain dynamics in aging: disruptions in functional connectivity and the role of the rich club , 2020, bioRxiv.

[17]  Patricio Donnelly Kehoe,et al.  Modeling regional changes in dynamic stability during sleep and wakefulness , 2020, NeuroImage.

[18]  A. Owen Improving diagnosis and prognosis in disorders of consciousness. , 2020, Brain : a journal of neurology.

[19]  Morten L. Kringelbach,et al.  Turbulent-like Dynamics in the Human Brain , 2019, bioRxiv.

[20]  Luca Turella,et al.  Variability in the analysis of a single neuroimaging dataset by many teams , 2019, Nature.

[21]  Ruiwang Huang,et al.  Abnormal dynamic properties of functional connectivity in disorders of consciousness , 2019, NeuroImage: Clinical.

[22]  Guy B. Williams,et al.  Consciousness-specific dynamic interactions of brain integration and functional diversity , 2019, Nature Communications.

[23]  Morten L. Kringelbach,et al.  Dynamical exploration of the repertoire of brain networks at rest is modulated by psilocybin , 2019, NeuroImage.

[24]  Gustavo Deco,et al.  Altered ability to access a clinically relevant control network in patients remitted from major depressive disorder , 2019, Human brain mapping.

[25]  Steven Laureys,et al.  Human consciousness is supported by dynamic complex patterns of brain signal coordination , 2019, Science Advances.

[26]  F. Wendling,et al.  Targeting brain networks with multichannel transcranial current stimulation (tCS) , 2018, Current Opinion in Biomedical Engineering.

[27]  Vince D. Calhoun,et al.  Classification and Prediction of Brain Disorders Using Functional Connectivity: Promising but Challenging , 2018, Front. Neurosci..

[28]  Morten L. Kringelbach,et al.  Perturbation of whole-brain dynamics in silico reveals mechanistic differences between brain states , 2018, NeuroImage.

[29]  Xerxes D. Arsiwalla,et al.  Measuring the Complexity of Consciousness , 2018, Front. Neurosci..

[30]  Morten L. Kringelbach,et al.  Functional connectivity dynamically evolves on multiple time-scales over a static structural connectome: Models and mechanisms , 2017, NeuroImage.

[31]  Dimitri Van De Ville,et al.  The dynamic functional connectome: State-of-the-art and perspectives , 2017, NeuroImage.

[32]  Camille Chatelle,et al.  Functional Networks in Disorders of Consciousness , 2017, Seminars in Neurology.

[33]  Vince D. Calhoun,et al.  Time-Resolved Resting-State Functional Magnetic Resonance Imaging Analysis: Current Status, Challenges, and New Directions , 2017, Brain Connect..

[34]  Gustavo Deco,et al.  Cognitive performance in healthy older adults relates to spontaneous switching between states of functional connectivity during rest , 2017, Scientific Reports.

[35]  Gustavo Deco,et al.  Increased Stability and Breakdown of Brain Effective Connectivity During Slow-Wave Sleep: Mechanistic Insights from Whole-Brain Computational Modelling , 2017, Scientific Reports.

[36]  Ludovica Griffanti,et al.  Hand classification of fMRI ICA noise components , 2017, NeuroImage.

[37]  Morten L. Kringelbach,et al.  Hierarchy of Information Processing in the Brain: A Novel ‘Intrinsic Ignition’ Framework , 2017, Neuron.

[38]  Morten L. Kringelbach,et al.  Single or multiple frequency generators in on-going brain activity: A mechanistic whole-brain model of empirical MEG data , 2017, NeuroImage.

[39]  M. Breakspear Dynamic models of large-scale brain activity , 2017, Nature Neuroscience.

[40]  Gustavo Deco,et al.  The dynamics of resting fluctuations in the brain: metastability and its dynamical cortical core , 2016, bioRxiv.

[41]  G. Tononi,et al.  Stratification of unresponsive patients by an independently validated index of brain complexity , 2016, Annals of neurology.

[42]  Danielle S Bassett,et al.  The Energy Landscape of Neurophysiological Activity Implicit in Brain Network Structure , 2016, Scientific Reports.

[43]  M. Kringelbach,et al.  Metastability and Coherence: Extending the Communication through Coherence Hypothesis Using A Whole-Brain Computational Perspective , 2016, Trends in Neurosciences.

[44]  J. Giacino,et al.  Sensitivity and Specificity of the Coma Recovery Scaleerevised Total Score in Detection of Conscious Awareness Archives of Physical Medicine and Rehabilitation , 2022 .

[45]  Vinzenz Fleischer,et al.  Structural Brain Network Characteristics Can Differentiate CIS from Early RRMS , 2016, Front. Neurosci..

[46]  Stamatios N. Sotiropoulos,et al.  An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging , 2016, NeuroImage.

[47]  Sarah Feldt Muldoon,et al.  Stimulation-Based Control of Dynamic Brain Networks , 2016, PLoS Comput. Biol..

[48]  Jun Zhang,et al.  How are different neural networks related to consciousness? , 2015, Annals of neurology.

[49]  Athena Demertzi,et al.  Intrinsic functional connectivity differentiates minimally conscious from unresponsive patients. , 2015, Brain : a journal of neurology.

[50]  G. Tononi,et al.  Rethinking segregation and integration: contributions of whole-brain modelling , 2015, Nature Reviews Neuroscience.

[51]  Steven Laureys,et al.  Thalamic and extrathalamic mechanisms of consciousness after severe brain injury , 2015, Annals of neurology.

[52]  S. Rossi,et al.  Non-invasive electrical and magnetic stimulation of the brain, spinal cord, roots and peripheral nerves: Basic principles and procedures for routine clinical and research application. An updated report from an I.F.C.N. Committee , 2015, Clinical Neurophysiology.

[53]  Gustavo Deco,et al.  Functional connectivity dynamics: Modeling the switching behavior of the resting state , 2015, NeuroImage.

[54]  A. Owen,et al.  Thalamo-frontal connectivity mediates top-down cognitive functions in disorders of consciousness , 2015, Neurology.

[55]  M. Kringelbach,et al.  Great Expectations: Using Whole-Brain Computational Connectomics for Understanding Neuropsychiatric Disorders , 2014, Neuron.

[56]  Steen Moeller,et al.  ICA-based artefact removal and accelerated fMRI acquisition for improved resting state network imaging , 2014, NeuroImage.

[57]  M. Szczygieł,et al.  Clinimetric measurement in traumatic brain injuries , 2014, Journal of medicine and life.

[58]  Alexander A. Fingelkurts,et al.  Do we need a theory-based assessment of consciousness in the field of disorders of consciousness? , 2014, Front. Hum. Neurosci..

[59]  H. Laufs,et al.  Decoding Wakefulness Levels from Typical fMRI Resting-State Data Reveals Reliable Drifts between Wakefulness and Sleep , 2014, Neuron.

[60]  Ludovica Griffanti,et al.  Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers , 2014, NeuroImage.

[61]  M. Bruno,et al.  Tdcs in Patients with Disorders of Consciousness: Sham-controlled Randomised Double Blind Study the Authors Report No Disclosures Relevant to the Manuscript , 2022 .

[62]  Morten L. Kringelbach,et al.  Exploring the network dynamics underlying brain activity during rest , 2014, Progress in Neurobiology.

[63]  Eswar Damaraju,et al.  Tracking whole-brain connectivity dynamics in the resting state. , 2014, Cerebral cortex.

[64]  J. Kelso,et al.  The Metastable Brain , 2014, Neuron.

[65]  Steven Laureys,et al.  Altered network properties of the fronto-parietal network and the thalamus in impaired consciousness☆ , 2013, NeuroImage: Clinical.

[66]  David A. Leopold,et al.  Dynamic functional connectivity: Promise, issues, and interpretations , 2013, NeuroImage.

[67]  H. Laufs,et al.  Breakdown of long-range temporal dependence in default mode and attention networks during deep sleep , 2013, Proceedings of the National Academy of Sciences.

[68]  G. Tononi,et al.  A Theoretically Based Index of Consciousness Independent of Sensory Processing and Behavior , 2013, Science Translational Medicine.

[69]  Yong He,et al.  Probabilistic Diffusion Tractography and Graph Theory Analysis Reveal Abnormal White Matter Structural Connectivity Networks in Drug-Naive Boys with Attention Deficit/Hyperactivity Disorder , 2013, The Journal of Neuroscience.

[70]  Steven Laureys,et al.  Consciousness supporting networks , 2013, Current Opinion in Neurobiology.

[71]  Tao Yu,et al.  Global functional connectivity reveals highly significant differences between the vegetative and the minimally conscious state , 2013, Journal of Neurology.

[72]  Steven Laureys,et al.  A role for the default mode network in the bases of disorders of consciousness , 2012, Annals of neurology.

[73]  Michael Breakspear,et al.  A Canonical Model of Multistability and Scale-Invariance in Biological Systems , 2012, PLoS Comput. Biol..

[74]  Morten L. Kringelbach,et al.  MEG Can Map Short and Long-Term Changes in Brain Activity following Deep Brain Stimulation for Chronic Pain , 2012, PloS one.

[75]  J. A. Scott Kelso,et al.  Multistability and metastability: understanding dynamic coordination in the brain , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[76]  G. Deco,et al.  Ongoing Cortical Activity at Rest: Criticality, Multistability, and Ghost Attractors , 2012, The Journal of Neuroscience.

[77]  Morten L. Kringelbach,et al.  Balancing the Brain: Resting State Networks and Deep Brain Stimulation , 2011, Front. Integr. Neurosci..

[78]  James A. Roberts,et al.  Biophysical Mechanisms of Multistability in Resting-State Cortical Rhythms , 2011, The Journal of Neuroscience.

[79]  Olaf Sporns,et al.  THE HUMAN CONNECTOME: A COMPLEX NETWORK , 2011, Schizophrenia Research.

[80]  Athena Demertzi,et al.  Two Distinct Neuronal Networks Mediate the Awareness of Environment and of Self , 2011, Journal of Cognitive Neuroscience.

[81]  P. Tonin,et al.  Behavioral and Neurophysiological Effects of Repetitive Transcranial Magnetic Stimulation on the Minimally Conscious State , 2011, Neurorehabilitation and neural repair.

[82]  Jens Clausen,et al.  Ethical brain stimulation – neuroethics of deep brain stimulation in research and clinical practice , 2010, The European journal of neuroscience.

[83]  R. Turner,et al.  Eigenvector Centrality Mapping for Analyzing Connectivity Patterns in fMRI Data of the Human Brain , 2010, PloS one.

[84]  G. Tononi,et al.  Breakdown in cortical effective connectivity during midazolam-induced loss of consciousness , 2010, Proceedings of the National Academy of Sciences.

[85]  Alan C. Evans,et al.  Age- and Gender-Related Differences in the Cortical Anatomical Network , 2009, The Journal of Neuroscience.

[86]  Alexander Leemans,et al.  The B‐matrix must be rotated when correcting for subject motion in DTI data , 2009, Magnetic resonance in medicine.

[87]  F. Plum,et al.  Behavioural improvements with thalamic stimulation after severe traumatic brain injury , 2008, Nature.

[88]  Mark W. Woolrich,et al.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? , 2007, NeuroImage.

[89]  P. Fries A mechanism for cognitive dynamics: neuronal communication through neuronal coherence , 2005, Trends in Cognitive Sciences.

[90]  Stephen M. Smith,et al.  Probabilistic independent component analysis for functional magnetic resonance imaging , 2004, IEEE Transactions on Medical Imaging.

[91]  Timothy Edward John Behrens,et al.  Characterization and propagation of uncertainty in diffusion‐weighted MR imaging , 2003, Magnetic resonance in medicine.

[92]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[93]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[94]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[95]  Stephen M. Smith,et al.  A global optimisation method for robust affine registration of brain images , 2001, Medical Image Anal..

[96]  Á. Pascual-Leone,et al.  Transcranial magnetic stimulation: studying the brain-behaviour relationship by induction of 'virtual lesions'. , 1999, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[97]  Y. Benjamini,et al.  More powerful procedures for multiple significance testing. , 1990, Statistics in medicine.

[98]  M. Nitsche,et al.  Practical Guide to Transcranial Direct Current Stimulation , 2019, Springer International Publishing.

[99]  Shouliang Qi,et al.  Structural brain network , 2016 .

[100]  R. Todd Constable,et al.  Challenges in fMRI and Its Limitations , 2011 .

[101]  M. Boly,et al.  Default network connectivity reflects the level of consciousness in non-communicative brain-damaged patients. , 2010, Brain : a journal of neurology.

[102]  Marcello Massimini,et al.  A perturbational approach for evaluating the brain's capacity for consciousness. , 2009, Progress in brain research.

[103]  M. Jenkinson Non-linear registration aka Spatial normalisation , 2007 .

[104]  D. Papineau Theories of Consciousness , 2003 .

[105]  D. Shewmon,et al.  The minimally conscious state: definition and diagnostic criteria. , 2002, Neurology.

[106]  K. Bash [Loss of "consciousness"]. , 1982, Der Nervenarzt.