Tyrosine's Unique Role in the Hierarchical Assembly of Recombinant Spider Silk Proteins: From Spinning Dope to Fibers.

Producing recombinant spider silk fibers that exhibit mechanical properties approaching native spider silk is highly dependent on the constitution of the spinning dope. Previously published work has shown that recombinant spider silk fibers spun from dopes with phosphate-induced pre-assembly (biomimetic dopes) display a toughness approaching native spider silks far exceeding the mechanical properties of fibers spun from dopes without pre-assembly (classical dopes). Dynamic light scattering experiments comparing the two dopes reveal that biomimetic dope displays a systematic increase in assembly size over time, while light microscopy indicates liquid-liquid-phase separation (LLPS) as evidenced by the formation of micron-scale liquid droplets. Solution nuclear magnetic resonance (NMR) shows that the structural state in classical and biomimetic dopes displays a general random coil conformation in both cases; however, some subtle but distinct differences are observed, including a more ordered state for the biomimetic dope and small chemical shift perturbations indicating differences in hydrogen bonding of the protein in the different dopes with notable changes occurring for Tyr residues. Solid-state NMR demonstrates that the final wet-spun fibers from the two dopes display no structural differences of the poly(Ala) stretches, but biomimetic fibers display a significant difference in Tyr ring packing in non-β-sheet, disordered helical domains that can be traced back to differences in dope preparations. It is concluded that phosphate pre-orders the recombinant silk protein in biomimetic dopes resulting in LLPS and fibers that exhibit vastly improved toughness that could be due to aromatic ring packing differences in non-β-sheet domains that contain Tyr.

[1]  I. Felli,et al.  13C Direct Detected NMR for Challenging Systems , 2022, Chemical reviews.

[2]  M. Muthukumar,et al.  Investigating the Atomic and Mesoscale Interactions that Facilitate Spider Silk Protein Pre-Assembly. , 2021, Biomacromolecules.

[3]  C. Verma,et al.  Liquid-Liquid Phase Separation of Short Histidine- and Tyrosine-Rich Peptides: Sequence Specificity and Molecular Topology. , 2021, The journal of physical chemistry. B.

[4]  T. Scheibel,et al.  Interplay of Different Major Ampullate Spidroins during Assembly and Implications for Fiber Mechanics , 2021, Advanced materials.

[5]  J. Johansson,et al.  Doing What Spiders Cannot—A Road Map to Supreme Artificial Silk Fibers , 2021, ACS nano.

[6]  K. Numata,et al.  Spider silk self-assembly via modular liquid-liquid phase separation and nanofibrillation , 2020, Science Advances.

[7]  Vivek S. Bharadwaj,et al.  Selective One-Dimensional 13C-13C Spin-Diffusion Solid-State Nuclear Magnetic Resonance Methods to Probe Spatial Arrangements in Biopolymers Including Plant Cell Walls, Peptides, and Spider Silk. , 2020, The journal of physical chemistry. B.

[8]  A. Miserez,et al.  Hydrogen bond guidance and aromatic stacking drive liquid-liquid phase separation of intrinsically disordered histidine-rich peptides , 2019, Nature Communications.

[9]  Nicolas L. Fawzi,et al.  Molecular interactions underlying liquid-liquid phase separation of the FUS low complexity domain , 2019, Nature Structural & Molecular Biology.

[10]  D. Laurents,et al.  The Singular NMR Fingerprint of a Polyproline II Helical Bundle. , 2018, Journal of the American Chemical Society.

[11]  J. Roehling,et al.  Hierarchical spidroin micellar nanoparticles as the fundamental precursors of spider silks , 2018, Proceedings of the National Academy of Sciences.

[12]  Wenwen Huang,et al.  Recombinant Spidroins Fully Replicate Primary Mechanical Properties of Natural Spider Silk. , 2018, Biomacromolecules.

[13]  A. Bax,et al.  Propensity for cis‐Proline Formation in Unfolded Proteins , 2018, Chembiochem : a European journal of chemical biology.

[14]  G. Plaza,et al.  Biomimetic spinning of artificial spider silk from a chimeric minispidroin. , 2017, Nature chemical biology.

[15]  T. Scheibel,et al.  Mechanical Testing of Engineered Spider Silk Filaments Provides Insights into Molecular Features on a Mesoscale. , 2017, ACS applied materials & interfaces.

[16]  T. Scheibel,et al.  Biomimetic Fibers Made of Recombinant Spidroins with the Same Toughness as Natural Spider Silk , 2015, Advanced materials.

[17]  J. Yarger,et al.  Exploring the backbone dynamics of native spider silk proteins in Black Widow silk glands with solution-state NMR spectroscopy , 2014 .

[18]  R. Lewis,et al.  Mechanical and Physical Properties of Recombinant Spider Silk Films Using Organic and Aqueous Solvents , 2014, Biomacromolecules.

[19]  R. Lewis,et al.  Effects of different post-spin stretching conditions on the mechanical properties of synthetic spider silk fibers. , 2014, Journal of the mechanical behavior of biomedical materials.

[20]  K. Schmidt-Rohr,et al.  Magic-angle-spinning NMR techniques for measuring long-range distances in biological macromolecules. , 2013, Accounts of chemical research.

[21]  I. Felli,et al.  13C-detected through-bond correlation experiments for protein resonance assignment by ultra-fast MAS solid-state NMR. , 2013, Chemphyschem : a European journal of chemical physics and physical chemistry.

[22]  K. Schmidt-Rohr,et al.  Practical use of chemical shift databases for protein solid-state NMR: 2D chemical shift maps and amino-acid assignment with secondary-structure information , 2013, Journal of biomolecular NMR.

[23]  Neal J. Zondlo Aromatic-proline interactions: electronically tunable CH/π interactions. , 2013, Accounts of chemical research.

[24]  J. Yarger,et al.  Shear-induced rigidity in spider silk glands , 2012 .

[25]  Janelle E. Jenkins,et al.  Solid-state NMR evidence for elastin-like beta-turn structure in spider dragline silk. , 2010, Chemical communications.

[26]  Anna Rising,et al.  Self-assembly of spider silk proteins is controlled by a pH-sensitive relay , 2010, Nature.

[27]  J. Hardy,et al.  The role of salt and shear on the storage and assembly of spider silk proteins. , 2010, Journal of structural biology.

[28]  Janelle E. Jenkins,et al.  Quantifying the fraction of glycine and alanine in beta-sheet and helical conformations in spider dragline silk using solid-state NMR. , 2008, Chemical communications.

[29]  Janelle E. Jenkins,et al.  Determining secondary structure in spider dragline silk by carbon-carbon correlation solid-state NMR spectroscopy. , 2008, Journal of the American Chemical Society.

[30]  Matthew A. Collin,et al.  Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes , 2007, PloS one.

[31]  Patrik Lundström,et al.  Fractional 13C enrichment of isolated carbons using [1-13C]- or [2-13C]-glucose facilitates the accurate measurement of dynamics at backbone Cα and side-chain methyl positions in proteins , 2007, Journal of biomolecular NMR.

[32]  Babu Varghese,et al.  Intramolecular pi-stacking interaction in a rigid molecular hinge substituted with 1-(pyrenylethynyl) units. , 2007, The Journal of organic chemistry.

[33]  Randolph V Lewis,et al.  Spider silk: ancient ideas for new biomaterials. , 2006, Chemical reviews.

[34]  S. Sankararaman,et al.  Synthesis and spectroscopic investigation of aggregation through cooperative pi-pi and C-H...O interactions in a novel pyrene octaaldehyde derivative. , 2006, Organic letters.

[35]  Todd A. Blackledge,et al.  Variation in the material properties of spider dragline silk across species , 2006 .

[36]  Todd A Blackledge,et al.  Quasistatic and continuous dynamic characterization of the mechanical properties of silk from the cobweb of the black widow spider Latrodectus hesperus , 2005, Journal of Experimental Biology.

[37]  F. Vollrath,et al.  Transition to a beta-sheet-rich structure in spidroin in vitro: the effects of pH and cations. , 2004, Biochemistry.

[38]  R. Rudolph,et al.  Primary structure elements of spider dragline silks and their contribution to protein solubility. , 2004, Biochemistry.

[39]  Ivano Bertini,et al.  13C-13C NOESY: an attractive alternative for studying large macromolecules. , 2004, Journal of the American Chemical Society.

[40]  Kiyonori Takegoshi,et al.  13C–1H dipolar-driven 13C–13C recoupling without 13C rf irradiation in nuclear magnetic resonance of rotating solids , 2003 .

[41]  Oleg Jardetzky,et al.  Probability‐based protein secondary structure identification using combined NMR chemical‐shift data , 2002, Protein science : a publication of the Protein Society.

[42]  J. Gosline,et al.  Elastic proteins: biological roles and mechanical properties. , 2002, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[43]  Kiyonori Takegoshi,et al.  13C–1H dipolar-assisted rotational resonance in magic-angle spinning NMR , 2001 .

[44]  O. W. Sørensen,et al.  Sequential HNCACB and CBCANH protein NMR pulse sequences. , 2001, Journal of magnetic resonance.

[45]  Fritz Vollrath,et al.  Changes in element composition along the spinning duct in a Nephila spider , 2001, Naturwissenschaften.

[46]  Fritz Vollrath,et al.  Liquid crystalline spinning of spider silk , 2001, Nature.

[47]  P E Wright,et al.  Sequence-dependent correction of random coil NMR chemical shifts. , 2001, Journal of the American Chemical Society.

[48]  C. Dobson,et al.  Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques. , 1999, Biochemistry.

[49]  B. Rossum,et al.  High-Field and High-Speed CP-MAS13C NMR Heteronuclear Dipolar-Correlation Spectroscopy of Solids with Frequency-Switched Lee–Goldburg Homonuclear Decoupling , 1997 .

[50]  L. Kay,et al.  Gradient-Enhanced Triple-Resonance Three-Dimensional NMR Experiments with Improved Sensitivity , 1994 .

[51]  M B Hinman,et al.  Isolation of a clone encoding a second dragline silk fibroin. Nephila clavipes dragline silk is a two-protein fiber. , 1992, The Journal of biological chemistry.

[52]  R. Lewis,et al.  Structure of a protein superfiber: spider dragline silk. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[53]  D. Torchia,et al.  Detection of cis and trans X-Pro peptide bonds in proteins by 13C NMR: application to collagen. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Susan F. Chase,et al.  Water extraction by the major ampullate duct during silk formation in the spider, Argiope aurantia Lucas , 1984 .

[55]  H. Kricheldorf,et al.  Secondary structure of peptides. 3. Carbon-13 NMR cross polarization/magic angle spinning spectroscopic characterization of solid polypeptides , 1983 .