The First Transcriptomic Atlas of the Adult Lacrimal Gland Reveals Epithelial Complexity and Identifies Novel Progenitor Cells in Mice

The lacrimal gland (LG) secretes aqueous tears. Previous studies have provided insights into the cell lineage relationships during tissue morphogenesis. However, little is known about the cell types composing the adult LG and their progenitors. Using scRNAseq, we established the first comprehensive cell atlas of the adult mouse LG to investigate the cell hierarchy, its secretory repertoire, and the sex differences. Our analysis uncovered the complexity of the stromal landscape. Epithelium subclustering revealed myoepithelial cells, acinar subsets, and two novel acinar subpopulations: Tfrchi and Car6hi cells. The ductal compartment contained Wfdc2+ multilayered ducts and an Ltf+ cluster formed by luminal and intercalated duct cells. Kit+ progenitors were identified as: Krt14+ basal ductal cells, Aldh1a1+ cells of Ltf+ ducts, and Sox10+ cells of the Car6hi acinar and Ltf+ epithelial clusters. Lineage tracing experiments revealed that the Sox10+ adult populations contribute to the myoepithelial, acinar, and ductal lineages. Using scRNAseq data, we found that the postnatally developing LG epithelium harbored key features of putative adult progenitors. Finally, we showed that acinar cells produce most of the sex-biased lipocalins and secretoglobins detected in mouse tears. Our study provides a wealth of new data on LG maintenance and identifies the cellular origin of sex-biased tear components.

[1]  V. Shestopalov,et al.  Lacrimal Gland Epithelial Cells Shape Immune Responses through the Modulation of Inflammasomes and Lipid Metabolism , 2023, International journal of molecular sciences.

[2]  K. Limesand,et al.  scRNAseq of healthy and irradiated mouse parotid glands highlights crosstalk between immune and secretory cells during chronic injury , 2023, bioRxiv.

[3]  Takako Noguchi,et al.  Role of FGF10/FGFR2b Signaling in Homeostasis and Regeneration of Adult Lacrimal Gland and Corneal Epithelium Proliferation , 2023, Investigative ophthalmology & visual science.

[4]  R. Casson,et al.  Histochemical Comparison of Human and Rat Lacrimal Glands: Implications for Bio-Engineering Studies , 2022, Translational vision science & technology.

[5]  H. Makarenkova,et al.  Spatial transcriptomics of the lacrimal gland features macrophage activity and epithelium metabolism as key alterations during chronic inflammation , 2022, Frontiers in Immunology.

[6]  R. Caspi,et al.  Mucosal immunology of the ocular surface , 2022, Mucosal Immunology.

[7]  S. Baek,et al.  Single Cell Transcriptomic Analysis Reveals Organ Specific Pericyte Markers and Identities , 2022, Frontiers in Cardiovascular Medicine.

[8]  M. Reilly,et al.  Myeloid LXR (Liver X Receptor) Deficiency Induces Inflammatory Gene Expression in Foamy Macrophages and Accelerates Atherosclerosis , 2022, Arteriosclerosis, thrombosis, and vascular biology.

[9]  D. Penn,et al.  Regulation of Sexually Dimorphic Expression of Major Urinary Proteins , 2022, Frontiers in Physiology.

[10]  C. Betsholtz,et al.  Claudin5 protects the peripheral endothelial barrier in an organ and vessel-type-specific manner , 2022, bioRxiv.

[11]  J. Ebersole,et al.  Gingival Transcriptome of Innate Antimicrobial Factors and the Oral Microbiome With Aging and Periodontitis , 2022, Frontiers in Oral Health.

[12]  Zhe Wang,et al.  Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data , 2020, Nature Communications.

[13]  A. Luster,et al.  CXCL10 chemokine regulates heterogeneity of the CD8+ T cell response and viral set point during chronic infection. , 2021, Immunity.

[14]  Mark D. Robinson,et al.  Doublet identification in single-cell sequencing data using scDblFinder , 2021, F1000Research.

[15]  P. Stopka,et al.  Biological Roles of Lipocalins in Chemical Communication, Reproduction, and Regulation of Microbiota , 2021, Frontiers in Physiology.

[16]  T. Carlsson,et al.  Novel Insights Into Muscarinic and Purinergic Responses in Primary Cultures of Rat Lacrimal Gland Myoepithelial Cells , 2021, Investigative ophthalmology & visual science.

[17]  C. Schmidt‐Weber,et al.  Secretoglobins in the big picture of immunoregulation in airway diseases , 2021, Allergy.

[18]  Tau En Lim,et al.  Plaque-associated human microglia accumulate lipid droplets in a chimeric model of Alzheimer’s disease , 2021, Molecular neurodegeneration.

[19]  Yue Yu,et al.  SOX9 is a critical regulator of TSPAN8-mediated metastasis in pancreatic cancer , 2021, Oncogene.

[20]  R. Bourgon,et al.  Cross-tissue organization of the fibroblast lineage , 2021, Nature.

[21]  Y. Savir,et al.  Discrete limbal epithelial stem cell populations mediate corneal homeostasis and wound healing. , 2021, Cell stem cell.

[22]  Yihai Cao,et al.  Molecular identity of human limbal heterogeneity involved in corneal homeostasis and privilege. , 2021, The ocular surface.

[23]  T. Cao,et al.  Single-cell transcriptome profiling reveals vascular endothelial cell heterogeneity in human skin , 2021, Theranostics.

[24]  K. Hirschi,et al.  Vascular endothelial cell specification in health and disease , 2021, Angiogenesis.

[25]  M. van Eijk,et al.  The Unique Phenotype of Lipid-Laden Macrophages , 2021, International journal of molecular sciences.

[26]  H. Clevers,et al.  Exploring the human lacrimal gland using organoids and single-cell sequencing. , 2021, Cell stem cell.

[27]  G. Kroemer,et al.  NUPR1 is a critical repressor of ferroptosis , 2021, Nature Communications.

[28]  M. Waldner,et al.  Matricellular Protein SPARCL1 Regulates Blood Vessel Integrity and Antagonizes Inflammatory Bowel Disease , 2021, Inflammatory bowel diseases.

[29]  Raphael Gottardo,et al.  Integrated analysis of multimodal single-cell data , 2020, Cell.

[30]  D. Dartt,et al.  Mouse Models of Sjögren’s Syndrome with Ocular Surface Disease , 2020, International journal of molecular sciences.

[31]  Michael C. Kelly,et al.  Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development , 2020, iScience.

[32]  Jiyang Cai,et al.  Modulation of Oxidative Stress and Inflammation in the Aged Lacrimal Gland. , 2020, The American journal of pathology.

[33]  M. Corada,et al.  Mapping endothelial-cell diversity in cerebral cavernous malformations at single-cell resolution , 2020, eLife.

[34]  J. Björkegren,et al.  Single-cell analysis uncovers fibroblast heterogeneity and criteria for fibroblast and mural cell identification and discrimination , 2020, Nature Communications.

[35]  H. Makarenkova,et al.  THC Regulates Tearing via Cannabinoid CB1 Receptors , 2020, Investigative ophthalmology & visual science.

[36]  C. Ding,et al.  New insight into lacrimal gland function: Role of the duct epithelium in tear secretion. , 2020, The ocular surface.

[37]  O. K. Olstad,et al.  Lacrimal Gland Myoepithelial Cells Are Altered in a Mouse Model of Dry Eye Disease. , 2020, The American journal of pathology.

[38]  J. Gillette,et al.  Tetraspanin Scaffold Proteins Function as Key Regulators of Hematopoietic Stem Cells , 2020, Frontiers in Cell and Developmental Biology.

[39]  J. Jester,et al.  Origin and Lineage Plasticity of Endogenous Lacrimal Gland Epithelial Stem/Progenitor Cells , 2020, iScience.

[40]  Daniel Osorio,et al.  Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control , 2020, bioRxiv.

[41]  Q. Wang,et al.  Etv transcription factors functionally diverge from their upstream FGF signaling in lens development , 2020, eLife.

[42]  L. Bolund,et al.  Single-Cell Transcriptome Atlas of Murine Endothelial Cells , 2020, Cell.

[43]  L. Willemsen,et al.  Macrophage subsets in atherosclerosis as defined by single‐cell technologies , 2020, The Journal of pathology.

[44]  David R. Kelley,et al.  Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging , 2019, Genome research.

[45]  S. Dixon,et al.  Prominin2 Drives Ferroptosis Resistance by Stimulating Iron Export. , 2019, Developmental cell.

[46]  Todd E. Scheetz,et al.  Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration , 2019, Proceedings of the National Academy of Sciences.

[47]  A. Molofsky,et al.  Adventitial Cuffs: Regional Hubs for Tissue Immunity. , 2019, Trends in immunology.

[48]  Joshua D. Campbell,et al.  Decontamination of ambient RNA in single-cell RNA-seq with DecontX , 2019, Genome Biology.

[49]  Ivona Percec,et al.  Identification of a mesenchymal progenitor cell hierarchy in adipose tissue , 2019, Science.

[50]  R. Satija,et al.  Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression , 2019, Genome Biology.

[51]  Dennis Kostka,et al.  scds: Computational Annotation of Doublets in Single Cell RNA Sequencing Data , 2019, bioRxiv.

[52]  E. Bruford,et al.  Update on the human and mouse lipocalin (LCN) gene family, including evidence the mouse Mup cluster is result of an “evolutionary bloom” , 2019, Human Genomics.

[53]  M. Hoffman,et al.  Sox10 Regulates Plasticity of Epithelial Progenitors toward Secretory Units of Exocrine Glands , 2019, Stem cell reports.

[54]  M. Vijay-Kumar,et al.  The Iron Tug-of-War between Bacterial Siderophores and Innate Immunity , 2019, Journal of Innate Immunity.

[55]  R. Weigert,et al.  Mitochondrial Populations Exhibit Differential Dynamic Responses to Increased Energy Demand during Exocytosis In Vivo , 2019, iScience.

[56]  Benjamin R. Arenkiel,et al.  Pancreatic Cell Fate Determination Relies on Notch Ligand Trafficking by NFIA. , 2018, Cell reports.

[57]  J. Malmström,et al.  The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking , 2018, Journal of Innate Immunity.

[58]  D. Sullivan,et al.  Sex Effects on Gene Expression in Lacrimal Glands of Mouse Models of Sjögren Syndrome , 2018, Investigative ophthalmology & visual science.

[59]  O. Klein,et al.  Diverse progenitor cells preserve salivary gland ductal architecture after radiation-induced damage , 2018, Development.

[60]  A. Mildner,et al.  Developmental and Functional Heterogeneity of Monocytes. , 2018, Immunity.

[61]  Zhixiang Zuo,et al.  Forkhead Box M1 Transcriptionally Regulates the Expression of Long Noncoding RNAs Snhg8 and Gm26917 to Promote Proliferation and Survival of Muscle Satellite Cells , 2018, Stem cells.

[62]  Zev J. Gartner,et al.  DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors , 2018, bioRxiv.

[63]  P. Tassone,et al.  MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches , 2018, Journal of Hematology & Oncology.

[64]  M. Giladi,et al.  Inherent flexibility of CLIC6 revealed by crystallographic and solution studies , 2018, Scientific Reports.

[65]  S. Bromley,et al.  CXCL10 stabilizes T cell-brain endothelial cell adhesion leading to the induction of cerebral malaria. , 2018, JCI insight.

[66]  M. R. Kim,et al.  Emerging Roles of Vascular Cell Adhesion Molecule-1 (VCAM-1) in Immunological Disorders and Cancer , 2018, International journal of molecular sciences.

[67]  C. Hammond,et al.  Sex differences in clinical characteristics of dry eye disease. , 2018, The ocular surface.

[68]  P. Jacquemin,et al.  DIE-RNA: A Reproducible Strategy for the Digestion of Normal and Injured Pancreas, Isolation of Pancreatic Cells from Genetically Engineered Mouse Models and Extraction of High Quality RNA , 2018, Front. Physiol..

[69]  J. Marioni,et al.  Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing , 2017, Nature Communications.

[70]  M. Bansal,et al.  Alx4 relays sequential FGF signaling to induce lacrimal gland morphogenesis , 2017, PLoS genetics.

[71]  A. van Oudenaarden,et al.  Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations , 2017, Nature Methods.

[72]  M. Tallquist,et al.  Tracking Adventitial Fibroblast Contribution to Disease: A Review of Current Methods to Identify Resident Fibroblasts. , 2017, Arteriosclerosis, thrombosis, and vascular biology.

[73]  P. Stopka,et al.  On the tear proteome of the house mouse (Mus musculus musculus) in relation to chemical signalling , 2017, PeerJ.

[74]  Michael T. McManus,et al.  Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland , 2017, Development.

[75]  Yin Shen,et al.  SOX2 regulates acinar cell development in the salivary gland , 2017, eLife.

[76]  J. Thomson,et al.  Specification and Diversification of Pericytes and Smooth Muscle Cells from Mesenchymoangioblasts , 2017, Cell reports.

[77]  K. Ley,et al.  Differential DARC/ACKR1 expression distinguishes venular from non-venular endothelial cells in murine tissues , 2017, BMC Biology.

[78]  C. Lingle,et al.  Knockout of the LRRC26 subunit reveals a primary role of LRRC26-containing BK channels in secretory epithelial cells , 2017, Proceedings of the National Academy of Sciences.

[79]  L. Suresh,et al.  Evaluation of Autoantibodies in Patients with Primary and Secondary Sjogren’s Syndrome , 2017, The open rheumatology journal.

[80]  P. Stopka,et al.  On the saliva proteome of the Eastern European house mouse (Mus musculus musculus) focusing on sexual signalling and immunity , 2016, Scientific Reports.

[81]  L. Santambrogio,et al.  Patterns of expression of factor VIII and von Willebrand factor by endothelial cell subsets in vivo. , 2016, Blood.

[82]  R. Bonecchi,et al.  Atypical Chemokine Receptors and Their Roles in the Resolution of the Inflammatory Response , 2016, Front. Immunol..

[83]  Michael J. Parsons,et al.  Centroacinar cells: At the center of pancreas regeneration. , 2016, Developmental biology.

[84]  G. Anderson,et al.  Context-Dependent Development of Lymphoid Stroma from Adult CD34(+) Adventitial Progenitors. , 2016, Cell reports.

[85]  R. Meech,et al.  Lacrimal Gland Repair Using Progenitor Cells , 2016, Stem cells translational medicine.

[86]  R. C. Karn,et al.  Comparative Proteomics of Mouse Tears and Saliva: Evidence from Large Protein Families for Functional Adaptation , 2015, Proteomes.

[87]  M. Eliaçık,et al.  Evaluation of the effects of serum iron levels on lacrimal gland secretion , 2015, The Kaohsiung journal of medical sciences.

[88]  H. Makarenkova,et al.  Myoepithelial Cells: Their Origin and Function in Lacrimal Gland Morphogenesis, Homeostasis, and Repair , 2015, Current Molecular Biology Reports.

[89]  P. Montgomery,et al.  Ocular Mucosal Immunity , 2015, Mucosal Immunology.

[90]  J. Wilkins,et al.  Towards further defining the proteome of mouse saliva , 2015, Proteome Science.

[91]  R. Gronostajski,et al.  NFIB Regulates Embryonic Development of Submandibular Glands , 2015, Journal of dental research.

[92]  J. Frost,et al.  The RhoGEF Net1 is required for normal mammary gland development. , 2014, Molecular endocrinology.

[93]  A. Terzic,et al.  Metabolic regulation of redox status in stem cells. , 2014, Antioxidants & redox signaling.

[94]  S. Menon,et al.  Mammary stem cells have myoepithelial cell properties , 2014, Nature Cell Biology.

[95]  Y. Liu,et al.  FGF signaling activates a Sox9-Sox10 pathway for the formation and branching morphogenesis of mouse ocular glands , 2014, Development.

[96]  Angeldeep W. Kaur,et al.  Murine Pheromone Proteins Constitute a Context-Dependent Combinatorial Code Governing Multiple Social Behaviors , 2014, Cell.

[97]  E. A. Volpe,et al.  Ocular surface disease and dacryoadenitis in aging C57BL/6 mice. , 2014, The American journal of pathology.

[98]  R. Meech,et al.  Transcription factors Runx1 to 3 are expressed in the lacrimal gland epithelium and are involved in regulation of gland morphogenesis and regeneration. , 2013, Investigative ophthalmology & visual science.

[99]  D. O'Shannessy,et al.  Expression of Folate Receptor-&agr; (FRA) in Gynecologic Malignancies and its Relationship to the Tumor Type , 2013, International journal of gynecological pathology : official journal of the International Society of Gynecological Pathologists.

[100]  P. Fagone,et al.  Modulation of heat shock proteins during macrophage differentiation , 2012, Inflammation Research.

[101]  M. Ali,et al.  Establishing Human Lacrimal Gland Cultures with Secretory Function , 2012, PloS one.

[102]  R. Meech,et al.  Barx2 and Fgf10 regulate ocular glands branching morphogenesis by controlling extracellular matrix remodeling , 2011, Development.

[103]  F. Scheer,et al.  Day/night variations of high-molecular-weight adiponectin and lipocalin-2 in healthy men studied under fed and fasted conditions , 2010, Diabetologia.

[104]  U. Holmskov,et al.  Review: Gp-340/DMBT1 in mucosal innate immunity , 2010, Innate immunity.

[105]  Wendy S. Wright,et al.  Lipocalin-2 Deficiency Impairs Thermogenesis and Potentiates Diet-Induced Insulin Resistance in Mice , 2010, Diabetes.

[106]  S. Leach,et al.  Isolation and characterization of centroacinar/terminal ductal progenitor cells in adult mouse pancreas , 2009, Proceedings of the National Academy of Sciences.

[107]  Rashmi Chandra,et al.  Neural and hormonal regulation of pancreatic secretion , 2009, Current opinion in gastroenterology.

[108]  Takeru Yoshimura,et al.  Immunopathology and Infectious Diseases Sjögren ’ s Syndrome-Like Ocular Surface Disease in Thrombospondin-1 Deficient Mice , 2010 .

[109]  M. Willcox,et al.  Role of lactoferrin in the tear film. , 2009, Biochimie.

[110]  S. Bonner-Weir,et al.  Carbonic anhydrase II-positive pancreatic cells are progenitors for both endocrine and exocrine pancreas after birth , 2008, Proceedings of the National Academy of Sciences.

[111]  J. Alroy,et al.  Mechanisms of murine lacrimal gland repair after experimentally induced inflammation. , 2008, Investigative ophthalmology & visual science.

[112]  Haitao Li,et al.  Use of an alpha-smooth muscle actin GFP reporter to identify an osteoprogenitor population. , 2008, Bone.

[113]  Hua Li,et al.  Reciprocal Intraepithelial Interactions Between TP63 and Hedgehog Signaling Regulate Quiescence and Activation of Progenitor Elaboration by Mammary Stem Cells , 2008, Stem cells.

[114]  B. Lilly,et al.  Generation and characterization of Csrp1 enhancer‐driven tissue‐restricted Cre‐recombinase mice , 2008, Genesis.

[115]  G. Cairo,et al.  A precious metal: Iron, an essential nutrient for all cells , 2006, Genes & Nutrition.

[116]  A. Saghatelian,et al.  Identification of protein pheromones that promote aggressive behaviour , 2007, Nature.

[117]  W. Huttner,et al.  Differential expression of Prominin-1 (CD133) and Prominin-2 in major cephalic exocrine glands of adult mice , 2007, Histochemistry and Cell Biology.

[118]  P. Stopka,et al.  The advertisement role of major urinary proteins in mice , 2007, Physiology & Behavior.

[119]  D. Shima,et al.  RGS5 expression is a quantitative measure of pericyte coverage of blood vessels , 2007, Angiogenesis.

[120]  S. Yonemura,et al.  Grainyhead-related transcription factor is required for duct maturation in the salivary gland and the kidney of the mouse , 2006, Development.

[121]  J. Resau,et al.  Gene expression in rat lacrimal gland duct cells collected using laser capture microdissection: evidence for K+ secretion by duct cells. , 2006, Investigative ophthalmology & visual science.

[122]  S. Cross,et al.  WFDC2 (HE4): A potential role in the innate immunity of the oral cavity and respiratory tract and the development of adenocarcinomas of the lung , 2006, Respiratory research.

[123]  J. Furness,et al.  The distribution of intermediate‐conductance, calcium‐activated, potassium (IK) channels in epithelial cells , 2006, Journal of anatomy.

[124]  F. Paulsen Cell and molecular biology of human lacrimal gland and nasolacrimal duct mucins. , 2006, International review of cytology.

[125]  David J. Evans,et al.  Surfactant Protein D Is Present in Human Tear Fluid and the Cornea and Inhibits Epithelial Cell Invasion by Pseudomonas aeruginosa , 2005, Infection and Immunity.

[126]  S. Toyosawa,et al.  Carbonic anhydrase isozyme VI in rat lacrimal gland , 1995, Histochemistry and Cell Biology.

[127]  Friedrich Paulsen,et al.  Human lacrimal gland mucins , 2004, Cell and Tissue Research.

[128]  D. Jung,et al.  Extracellular proteinase inhibitor-accelerated apoptosis is associated with B cell activating factor in mammary epithelial cells. , 2004, Experimental cell research.

[129]  A. Reymond,et al.  Identification of a novel member of the CLIC family, CLIC6, mapping to 21q22.12. , 2003, Gene.

[130]  D. Clemmons,et al.  Regulation of Vascular Smooth Muscle Cell Responses to Insulin-like Growth Factor (IGF)-I by Local IGF-binding Proteins* , 2003, Journal of Biological Chemistry.

[131]  N. Packer,et al.  Identification of two highly sialylated human tear-fluid DMBT1 isoforms: the major high-molecular-mass glycoproteins in human tears. , 2002, The Biochemical journal.

[132]  S. Hawgood,et al.  Tissue Distribution of Surfactant Proteins A and D in the Mouse , 2002, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[133]  M. Yoshida,et al.  Identification of two rodent genes encoding homologues to seminal vesicle autoantigen: a gene family including the gene for prolactin-inducible protein. , 2001, Biochemical and biophysical research communications.

[134]  G. Mcmahon,et al.  FGF10 is an inducer and Pax6 a competence factor for lacrimal gland development. , 2000, Development.

[135]  J. Milbrandt,et al.  Neurturin Exerts Potent Actions on Survival and Function of Midbrain Dopaminergic Neurons , 1998, The Journal of Neuroscience.

[136]  D. Sullivan,et al.  Impact of aging and gender on the lg‐containing cell profile of the lacrimal gland , 1988, Acta ophthalmologica.

[137]  A. Cornell-Bell,et al.  Gender-related differences in the morphology of the lacrimal gland. , 1985, Investigative ophthalmology & visual science.

[138]  S. Spicer,et al.  Immunolocalization of carbonic anhydrase isozymes in rat and mouse salivary and exorbital lacrimal glands , 1983, The Anatomical record.

[139]  D. Dartt,et al.  Lacrimal gland electrolyte and water secretion in the rabbit: localization and role of (Na+ + K+)‐activated ATPase. , 1981, The Journal of physiology.

[140]  N. V. van Haeringen,et al.  Amylase in human tear fluid: origin and characteristics, compared with salivary and urinary amylases. , 1975, Experimental eye research.

[141]  Seong-Soo Han,et al.  SECRETORY PROTEIN SYNTHESIS IN THE STIMULATED RAT PAROTID GLAND , 1973, The Journal of cell biology.