Methods for species delimitation in bumblebees (Hymenoptera, Apidae, Bombus): towards an integrative approach
暂无分享,去创建一个
Thomas Lecocq | Simon Dellicour | Pierre Rasmont | I. Valterová | D. Michez | P. Rasmont | J. Rasplus | T. Lecocq | N. Brasero | S. Dellicour | A. Dewulf | T. De Meulemeester | Denis Michez | Irena Valterová | Thibaut De Meulemeester | Manuel Dehon | Alexandre Dewulf | Nicolas Brasero | Jean‐Yves Rasplus | Manuel Dehon | Nicolas Brasero
[1] Adam Tofilski,et al. Using geometric morphometrics and standard morphometry to discriminate three honeybee subspecies , 2008, Apidologie.
[2] J. An,et al. The bumblebees of the subgenus Subterraneobombus: integrating evidence from morphology and DNA barcodes (Hymenoptera, Apidae, Bombus) , 2011 .
[3] J. Bull,et al. An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis , 1993 .
[4] Thomas Lecocq,et al. Molecular and chemical characters to evaluate species status of two cuckoo bumblebees: Bombus barbutellus and Bombus maxillosus (Hymenoptera, Apidae, Bombini) , 2011 .
[5] F. Bonhomme,et al. Génétique et évolution du génome mitochondrial des Métazoaires , 1986, Génétique, sélection, évolution.
[6] An integrative taxonomic approach to assess the status of Corsican bumblebees: implications for conservation , 2015 .
[7] M. Ayasse,et al. A method for year-round rearing of cuckoo bumblebees (Hymenoptera: Apoidea: Bombus subgenus Psithyrus) , 2013 .
[8] Brian L. Fisher,et al. A Revision of Malagasy Species of Anochetus Mayr and Odontomachus Latreille (Hymenoptera: Formicidae) , 2008, PloS one.
[9] K. de Queiroz,et al. Species concepts and species delimitation. , 2007, Systematic biology.
[10] Lukas Wagner,et al. A Greedy Algorithm for Aligning DNA Sequences , 2000, J. Comput. Biol..
[11] Z. Nagy,et al. Island Evolution and Systematic Revision of Comoran Snakes: Why and When Subspecies Still Make Sense , 2012, PloS one.
[12] A. Titze,et al. Male labial gland secretions and mitochondrial DNA markers support species status of Bombus cryptarum and B. magnus (Hymenoptera, Apidae) , 2005, Insectes Sociaux.
[13] J. Felsenstein. Phylogenies and the Comparative Method , 1985, The American Naturalist.
[14] Korbinian Strimmer,et al. APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..
[15] T. Hikida,et al. Sexual dimorphism and intraspecific variation in wing size and shape of Tongeia fischeri (Lepidoptera: Lycaenidae) , 2014 .
[16] S. Jarau,et al. Chemical ecology of bumble bees. , 2014, Annual review of entomology.
[17] R. Gurgel-Gonçalves,et al. Geometric morphometrics and ecological niche modelling for delimitation of near‐sibling triatomine species , 2011, Medical and veterinary entomology.
[18] J. Avise. What is the field of biogeography, and where is it going? , 2004 .
[19] I. Valterová,et al. Intraspecific Variation of the Cephalic Labial Gland Secretions in Bombus terrestris (L.) (Hymenoptera: Apidae) , 2008, Chemistry & biodiversity.
[20] J. Monteiro,et al. Comparative morphology of Astraea latispina (Philippi, 1844) and Astraea olfersii (Philippi, 1846) (Mollusca, Gastropoda, Turbinidae). , 2002, Brazilian journal of biology = Revista brasleira de biologia.
[21] D. Kroodsma,et al. Ecology and evolution of acoustic communication in birds , 1997 .
[22] Paul H. Williams,et al. A comprehensive phylogeny of the bumble bees (Bombus) , 2007 .
[23] Simon Dellicour,et al. GCALIGNER 1.0: an alignment program to compute a multiple sample comparison data matrix from large eco-chemical datasets obtained by GC. , 2013, Journal of separation science.
[24] T. Barraclough,et al. Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets , 2013, Systematic biology.
[25] J. Osborne,et al. Estimation of bumblebee queen dispersal distances using sibship reconstruction method , 2010, Molecular ecology.
[26] P. Rasmont,et al. Nest architecture and species status of the bumble bee Bombus (Mendacibombus) shaposhnikovi (Hymenoptera: Apidae: Bombini) , 2011, Apidologie.
[27] E. Pretorius. Using geometric morphometrics to investigate wing dimorphism in males and females of Hymenoptera – a case study based on the genus Tachysphex Kohl (Hymenoptera: Sphecidae: Larrinae) , 2005 .
[28] P. Legendre,et al. SPECIES ASSEMBLAGES AND INDICATOR SPECIES:THE NEED FOR A FLEXIBLE ASYMMETRICAL APPROACH , 1997 .
[29] Q. Thomaslecoc,et al. Molecular and chemical characters to evaluate species status of two cuckoo bumblebees : Bombus barbutellus and Bombus maxillosus ( Hymenoptera , Apidae , Bombini ) , 2011 .
[30] N. Vereecken,et al. Population differentiation in female sex pheromone and male preferences in a solitary bee , 2007, Behavioral Ecology and Sociobiology.
[31] A. Bertsch,et al. Cephalic labial gland secretions of males as species recognition signals in bumblebees: are there really geographical variations in the secretions of the Bombus terrestris subspecies? (Hymenoptera: Apidae: Bombus). , 2012 .
[32] Derrick J. Zwickl. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion , 2006 .
[33] M. Suchard,et al. Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.
[34] T. B. Hasselrot. Studies on Swedish bumblebees (genus Bombus Latr): their domestication and biology. , 1960 .
[35] B. Carstens,et al. Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model , 2012, BMC Evolutionary Biology.
[36] Bernhard Seifert,et al. Integrative taxonomy: a multisource approach to exploring biodiversity. , 2010, Annual review of entomology.
[37] A. Bagnères,et al. Insect Hydrocarbons: Chemical taxonomy with hydrocarbons , 2010 .
[38] I. Valterová,et al. Scent of a break-up: phylogeography and reproductive trait divergences in the red-tailed bumblebee (Bombus lapidarius) , 2013, BMC Evolutionary Biology.
[39] Alfried P Vogler,et al. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. , 2006, Systematic biology.
[40] D. Goulson,et al. Cryptic species identification: A simple diagnostic tool for discriminating between two problematic bumblebee species , 2006 .
[41] Alexander Schwartz,et al. Systematics And The Origin Of Species , 2016 .
[42] W. Reinig. On the variation ofBombus lapidarius L. and its cuckoo,Psithyrus rupestris Fabr., with notes on mimetic similarity , 1935, Journal of Genetics.
[43] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[44] Paul H. Williams,et al. Colour Patterns Do Not Diagnose Species: Quantitative Evaluation of a DNA Barcoded Cryptic Bumblebee Complex , 2012, PloS one.
[45] D. Maddison,et al. Mesquite: a modular system for evolutionary analysis. Version 2.6 , 2009 .
[46] B. Pedersen. A phylogenetic analysis of cuckoo bumblebees (Psithyrus, Lepeletier) and bumblebees (Bombus, Latreille) inferred from sequences of the mitochondrial gene cytochrome oxidase I. , 1996, Molecular phylogenetics and evolution.
[47] S. Trewick. DNA Barcoding is not enough: mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera: Acrididae). , 2008 .
[48] M. Appelgren,et al. Complexity of Bumble Bee Marking Pheremones: Biochemical, Ecological and Systematical Interpretations , 1981 .
[49] I. Valterová,et al. Cephalic secretions of the bumblebee subgenus Sibiricobombus Vogt suggest Bombus niveatus Kriechbaumer and Bombus vorticosus Gerstaecker are conspecific (Hymenoptera, Apidae, Bombus) , 2005 .
[50] Paul H. Williams,et al. Unveiling cryptic species of the bumblebee subgenus Bombus s. str. worldwide with COI barcodes (Hymenoptera: Apidae) , 2012 .
[51] N. Oldham,et al. Determination of the double bond position in functionalized monoenes by chemical ionization ion-trap mass spectrometry using acetonitrile as a reagent gas , 1999 .
[52] Derrick J. Zwickl,et al. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. , 2002, Molecular phylogenetics and evolution.
[53] Michael Balke,et al. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. , 2009, Systematic biology.
[54] D. Quicke,et al. Molecular, biogeographical and phenological evidence for the existence of three western European sibling species in the Colletes succinctus group (Hymenoptera: Apidae) , 2007 .
[55] G. Yule,et al. A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S. , 1925 .
[56] A. Purvis,et al. Inclusion of a near‐complete fossil record reveals speciation‐related molecular evolution , 2013 .
[57] C. Löfstedt. Moth Pheromone Genetics and Evolution , 1993 .
[58] K. Katoh,et al. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.
[59] R. Moritz,et al. Male flight distance and population substructure in the bumblebee Bombus terrestris. , 2009, The Journal of animal ecology.
[60] M. Elgar,et al. The evolution of pheromone diversity. , 2008, Trends in ecology & evolution.
[61] F. Rohlf,et al. Geometric morphometrics: Ten years of progress following the ‘revolution’ , 2004 .
[62] Cristina Dockx. Directional and stabilizing selection on wing size and shape in migrant and resident monarch butterflies, Danaus plexippus (L.), in Cuba , 2007 .
[63] P. Rasmont,et al. Landmark based geometric morphometric analysis of wing shape in Sibiricobombus Vogt (Hymenoptera: Apidae: Bombus Latreille) , 2007 .
[64] Austin Burt,et al. DIVERSIFICATION IN SEXUAL AND ASEXUAL ORGANISMS , 2003, Evolution; international journal of organic evolution.
[65] Jesse L. Grismer,et al. Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions , 2011, Proceedings of the Royal Society B: Biological Sciences.
[66] Thomas Lecocq,et al. Born in an Alien Nest : How Do Social Parasite Male Offspring Escape from Host Aggression? , 2012, PloS one.
[67] V. Pedersen. European bumblebees (Hymenoptera: Bombini)- phylogenetic relationships inferred from DNA sequences , 2002 .
[68] M. Engel,et al. Wing Shape of Four New Bee Fossils (Hymenoptera: Anthophila) Provides Insights to Bee Evolution , 2014, PloS one.
[69] Paul H. Williams,et al. Bombus cullumanus—an extinct European bumblebee species? , 2013, Apidologie.
[70] R. Galzin,et al. Assessing the effects of marine protected area (MPA) on a reef fish assemblage in a northwestern Mediterranean marine reserve: Identifying community-based indicators , 2006 .
[71] Paul M. Choate,et al. Evolution of the Insects , 2006 .
[72] D. Calam. Species and Sex-specific Compounds from the Heads of Male Bumblebees (Bombus spp.) , 1969, Nature.
[73] P. Hebert,et al. Identification of Birds through DNA Barcodes , 2004, PLoS biology.
[74] M. Engel,et al. Geometric morphometric analysis of a new Miocene bumble bee from the Randeck Maar of southwestern Germany (Hymenoptera: Apidae) , 2012 .
[75] A. Brower. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[76] A. Rooney,et al. Evolution of moth sex pheromones via ancestral genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[77] T. Barraclough,et al. Inferring evolutionarily significant units of bacterial diversity from broad environmental surveys of single-locus data , 2009, Biology Letters.
[78] A. Bertsch,et al. Male labial gland secretions as species recognition signals in species of Bombus , 2012 .
[79] D. Posada. jModelTest: phylogenetic model averaging. , 2008, Molecular biology and evolution.
[80] M. Virant-Doberlet,et al. Identification of Bombus species based on wing venation structure , 2011, Apidologie.
[81] H. Hines. Historical biogeography, divergence times, and diversification patterns of bumble bees (Hymenoptera: Apidae: Bombus). , 2008, Systematic biology.
[82] Paul H. Williams,et al. A simplified subgeneric classification of the bumblebees (genus Bombus) , 2011, Apidologie.
[83] Jodi L. Sedlock,et al. Single-locus species delimitation: a test of the mixed Yule–coalescent model, with an empirical application to Philippine round-leaf bats , 2012, Proceedings of the Royal Society B: Biological Sciences.
[84] E. Kalko,et al. Geographical differentiation, acoustic adaptation and species boundaries in mainland citril finches and insular Corsican finches, superspecies Carduelis [citrinella] , 2007 .
[85] Paul H. Williams,et al. Bumblebee vulnerability and conservation world-wide , 2009, Apidologie.
[86] A. Clarke,et al. Wing shape as a potential discriminator of morphologically similar pest taxa within the Bactrocera dorsalis species complex (Diptera: Tephritidae) , 2011, Bulletin of Entomological Research.
[87] D. Huson,et al. Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.
[88] R. I. Hill,et al. Ecologically relevant cryptic species in the highly polymorphic Amazonian butterfly Mechanitis mazaeus s.l. (Lepidoptera: Nymphalidae; Ithomiini) , 2012 .
[89] David J. Lohman,et al. Cryptic species as a window on diversity and conservation. , 2007, Trends in ecology & evolution.
[90] H. Paterson,et al. Evolution and the Recognition Concept of Species: Collected Writings , 1992 .
[91] Astrid Cruaud,et al. Empirical assessment of RAD sequencing for interspecific phylogeny. , 2014, Molecular biology and evolution.
[92] Jiajie Zhang,et al. A general species delimitation method with applications to phylogenetic placements , 2013, Bioinform..
[93] Bin Ma,et al. From Gene Trees to Species Trees , 2000, SIAM J. Comput..
[94] W. P. Maddison,et al. Mesquite: a modular system for evolutionary analysis. Version 2.01 (Build j28) , 2007 .
[95] G. Francis. Alkylthiolation for the determination of double-bond position in unsaturated fatty acid esters , 1981 .
[96] G. Bergström,et al. Scent Marking, Scent Origin, and Species Specificity in Male Premating Behavior of Two Scandinavian Bumblebees , 1997, Journal of Chemical Ecology.
[97] B. Baer. Bumblebees as model organisms to study male sexual selection in social insects , 2003, Behavioral Ecology and Sociobiology.
[98] D. Janzen,et al. DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservación Guanacaste, Costa Rica , 2008, Proceedings of the National Academy of Sciences.
[99] C. Michener. Classification of the Apidae (Hymenoptera). , 1990 .
[100] G. Yule,et al. A Mathematical Theory of Evolution Based on the Conclusions of Dr. J. C. Willis, F.R.S. , 1925 .
[101] J. Ferguson. On the use of genetic divergence for identifying species , 2002 .
[102] A. Bertsch. A phylogenetic framework for the bumblebee species of the subgenus Bombus sensu stricto based on mitochondrial DNA markers, with a short description of the neglected taxon B. minshanicola Bischoff, 1936 n. status. (Hymenoptera: Apidae: Bombus). , 2010 .
[103] M. Ayasse,et al. Mating behavior and chemical communication in the order Hymenoptera. , 2001, Annual review of entomology.
[104] J. Claudeta,et al. Assessing the effects of marine protected area (MPA) on a reef fish assemblage in a northwestern Mediterranean marine reserve: Identifying community-based indicators , 2006 .
[105] James Mallet,et al. Taxonomic inflation: its influence on macroecology and conservation. , 2004, Trends in ecology & evolution.
[106] B. G. Svensson. Pyrobombus lapponicus auct., in Europe recognized as two species: P. lapponicus (Fabricius, 1793) and P. monticola (Smith, 1849) (Hymenoptera, Apoidea, Bombinae) , 1979 .
[107] M. Patten. Chapter 3: Null Expectations in Subspecies Diagnosis , 2010 .
[108] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[109] S. Foster,et al. Intraspecific variation and interspecific differences in sex pheromones of sibling species inCtenopseustis obliquana complex , 1991, Journal of Chemical Ecology.
[110] P. Williams. An annotated checklist of bumble bees with an analysis of patterns of description (Hymenoptera: Apidae, Bombini) , 1998 .
[111] B. Rannala,et al. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. , 2004, Systematic biology.
[112] Clifford M. Hurvich,et al. Regression and time series model selection in small samples , 1989 .
[113] I. Pichová,et al. De Novo Biosynthesis of Sexual Pheromone in the Labial Gland of Bumblebee Males , 2013, Chembiochem : a European journal of chemical biology.
[114] L. Zane,et al. Genetic differentiation in the winter pine processionary moth (Thaumetopoea pityocampa — wilkinsoni complex), inferred by AFLP and mitochondrial DNA markers , 2002, Molecular ecology.
[115] Jean-Yves Rasplus,et al. Patterns of Genetic and Reproductive Traits Differentiation in Mainland vs. Corsican Populations of Bumblebees , 2013, PloS one.
[116] M. Elgar,et al. The evolution of sex pheromones in an ecologically diverse genus of flies , 2009 .