Computational and experimental investigation of antibacterial and antifungal properties of Nicotiana tabacum extracts

Abstract The identification of novel anti-infective agents of synthetic and natural origin represents one of the main aims of contemporary drug discovery. In the current work, four different varieties of Nicotiana tabacum, namely, K399, SPG28, Swat No. 1, and Swat No. 2, were studied to assess the antibacterial and antifungal properties of their extracts. The extracts contain anthraquinones, alkaloids, saponins, terpenoids, tannins, resins, steroids, proteins, and carbohydrates, and the antibacterial and antifungal activities were evaluated toward four bacterial and four fungal strains. N. tabacum K399 showed the highest zone of inhibition against E. coli. Similarly, K399 showed the highest antifungal potential, as the highest zone of inhibition for the set was detected against C. albicans. Then, the underlying molecular mechanism was further investigated, and the extracts were tested for their inhibitory potential against urease, an enzyme which is conserved in bacteria and fungi. Additionally, computational tools were enrolled to assess the role of rutin and chlorogenic acid, which are among the main constituents of N. tabacum leaves, in interacting with urease through molecular docking. Combined together, the computational and experimental results support the antibacterial and antifungal potential of N. tabacum extracts, particularly, that obtained from K399 variety.

[1]  N. Sultana,et al.  The Role of Natural and Semi-Synthetic Compounds in Ovarian Cancer: Updates on Mechanisms of Action, Current Trends and Perspectives , 2023, Molecules.

[2]  M. Moreno,et al.  Nicotiana tabacum Leaf Waste: Morphological Characterization and Chemical-Functional Analysis of Extracts Obtained from Powder Leaves by Using Green Solvents , 2023, Molecules.

[3]  S. Okonogi,et al.  Antioxidant, Anti-Inflammatory and Attenuating Intracellular Reactive Oxygen Species Activities of Nicotiana tabacum var. Virginia Leaf Extract Phytosomes and Shape Memory Gel Formulation , 2023, Gels.

[4]  Yunusov Valentin,et al.  Shapley values to explain machine learning models of school student’s academic performance during COVID-19 , 2022, 3C TIC: Cuadernos de desarrollo aplicados a las TIC.

[5]  Kotadi Chinnaiah,et al.  Implementation of Ensemble Method on DNA Data Using Various Cross Validation Techniques , 2022, 3C Tecnología_Glosas de innovación aplicadas a la pyme.

[6]  J. Hoeng,et al.  Fractionation and Extraction Optimization of Potentially Valuable Compounds and Their Profiling in Six Varieties of Two Nicotiana Species , 2022, Molecules.

[7]  S. Chander,et al.  Potential inhibitory activity of phytoconstituents against black fungus: In silico ADMET, molecular docking and MD simulation studies , 2022, Computational toxicology.

[8]  Adchara Prommaban,et al.  Phytochemical, Antioxidant, Antihyaluronidase, Antityrosinase, and Antimicrobial Properties of Nicotiana tabacum L. Leaf Extracts , 2022, Evidence-based complementary and alternative medicine : eCAM.

[9]  R. Guedes,et al.  Exploring the Chemical Space of Urease Inhibitors to Extract Meaningful Trends and Drivers of Activity , 2022, J. Chem. Inf. Model..

[10]  Leilei Qu,et al.  A mathematical model of plasmid-carried antibiotic resistance transmission in two types of cells , 2022, Applied Mathematics and Nonlinear Sciences.

[11]  A. Rauf,et al.  Black pepper (Piper nigrum) fruit-based gold nanoparticles (BP-AuNPs): Synthesis, characterization, biological activities, and catalytic applications – A green approach , 2022, Green Processing and Synthesis.

[12]  A. Rauf,et al.  Current advances of functional phytochemicals in Nicotiana plant and related potential value of tobacco processing waste: A review. , 2021, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

[13]  A. Rauf,et al.  Screening of Polyphenols in Tobacco (Nicotiana tabacum) and Determination of Their Antioxidant Activity in Different Tobacco Varieties , 2021, ACS omega.

[14]  Alessandra Gianoncelli,et al.  Multi-target Natural and Nature-Inspired Compounds against Neurodegeneration: A Focus on Dual Cholinesterase and Phosphodiesterase Inhibitors , 2021, Applied Sciences.

[15]  D. Kurt Impacts of Environmental Variations on Quality and Chemical Contents of Oriental Tobacco , 2021, Contributions to Tobacco & Nicotine Research.

[16]  Gerard D. Wright,et al.  The Antibiotic Resistome: A Guide for the Discovery of Natural Products as Antimicrobial Agents. , 2021, Chemical reviews.

[17]  A. Rauf,et al.  Punica granatum peel extracts mediated the green synthesis of gold nanoparticles and their detailed in vivo biological activities , 2021, Green Processing and Synthesis.

[18]  A. Rauf,et al.  Synthesis, characterization, biological activities, and catalytic applications of alcoholic extract of saffron (Crocus sativus) flower stigma-based gold nanoparticles , 2021 .

[19]  Yue-Hu Wang,et al.  Antifungal constituents from Nicotiana tabacum with the Wz locus infected by Phytophthora nicotianae , 2021, Results in Chemistry.

[20]  S. Iqbal,et al.  Evaluation of fungicidal potential of Ocimum sanctum L. and Nicotiana tabacum L. against Aspergillus flavus and Aspergillus niger , 2020 .

[21]  M. Memo,et al.  Enhanced G-quadruplex selectivity of flavonoid glycoside rutin over quercetin , 2020, Natural product research.

[22]  S. Javed,et al.  Identification of novel bacterial urease inhibitors through molecular shape and structure based virtual screening approaches , 2020, RSC advances.

[23]  S. Jokić,et al.  Recent advances in extraction of bioactive compounds from tobacco industrial waste-a review , 2020 .

[24]  Abdullah,et al.  Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica) , 2020, bioRxiv.

[25]  A. Alvino,et al.  Study on analytical characteristics of Nicotiana tabacum L., cv. Solaris biomass for potential uses in nutrition and biomethane production , 2019, Scientific Reports.

[26]  M. Memo,et al.  Natural phosphodiesterase 5 (PDE5) inhibitors: a computational approach , 2019, Natural product research.

[27]  C. Carlini,et al.  Ureases: Historical aspects, catalytic, and non-catalytic properties – A review , 2018, Journal of advanced research.

[28]  A. Jassbi,et al.  Ecological Roles and Biological Activities of Specialized Metabolites from the Genus Nicotiana. , 2017, Chemical reviews.

[29]  P. Liu,et al.  The influence of light quality on the accumulation of flavonoids in tobacco (Nicotiana tabacum L.) leaves. , 2016, Journal of photochemistry and photobiology. B, Biology.

[30]  M. Rafiq,et al.  Iminothiazoline‐Sulfonamide Hybrids as Jack Bean Urease Inhibitors; Synthesis, Kinetic Mechanism and Computational Molecular Modeling , 2016, Chemical biology & drug design.

[31]  O. Shekins,et al.  Phytochemical Screening of Tobacco (Nicotiana tabacum) and Its Effects on Some Haematological Parameters and Histopathology of Liver and Brain in Male Rats , 2016 .

[32]  A. Stoyanova,et al.  Extraction Products from Tobacco – Aroma and Bioactive Compounds and Activities , 2015 .

[33]  Galib,et al.  Validation of standard manufacturing procedure of Guḍūcī sattva (aqueous extract of Tinospora cordifolia (Willd.) Miers) and its tablets , 2013, Ancient science of life.

[34]  A. Hossain,et al.  Analytical determination of nicotine in tobacco leaves by gas chromatography–mass spectrometry , 2013 .

[35]  Marcus D. Hanwell,et al.  Avogadro: an advanced semantic chemical editor, visualization, and analysis platform , 2012, Journal of Cheminformatics.

[36]  P. Trivedi,et al.  Efficacy of some natural compounds as antifungal agents , 2012, Pharmacognosy reviews.

[37]  L. Ding,et al.  Rapid and Sensitive Analysis of Eight Polyphenols in Tobacco by Rapid Resolution Liquid Chromatogarphy , 2011 .

[38]  Arthur J. Olson,et al.  AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading , 2009, J. Comput. Chem..

[39]  Jinchao Shen,et al.  Determination of tobacco alkaloids by gas chromatography–mass spectrometry using cloud point extraction as a preconcentration step , 2006 .

[40]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[41]  Felicita Briški,et al.  Aerobic composting of tobacco industry solid waste—simulation of the process , 2003 .

[42]  J. S. Flores,et al.  The Secretions and Exudates of Plants Used in Mayan Traditional Medicine , 1996 .

[43]  A. Manilal,et al.  In vitro Antibacterial Activity and Phytochemical Analysis of Nicotiana tabacum L. Extracted in Different Organic Solvents , 2018 .