The structure of coral allene oxide synthase reveals a catalase adapted for metabolism of a fatty acid hydroperoxide.

8R-Lipoxygenase and allene oxide synthase (AOS) are parts of a naturally occurring fusion protein from the coral Plexaura homomalla. AOS catalyses the production of an unstable epoxide (an allene oxide) from the fatty acid hydroperoxide generated by the lipoxygenase activity. Here, we report the structure of the AOS domain and its striking structural homology to catalase. Whereas nominal sequence identity between the enzymes had been previously described, the extent of structural homology observed was not anticipated, given that this enzyme activity had been exclusively associated with the P450 superfamily, and conservation of a catalase fold without catalase activity is unprecedented. Whereas the heme environment is largely conserved, the AOS heme is planar and the distal histidine is flanked by two hydrogen-bonding residues. These critical differences likely facilitate the switch from a catalatic activity to that of a fatty acid hydroperoxidase.

[1]  S. Wrighton,et al.  Interactions of peroxyquinols with cytochromes P450 2B1, 3A1, and 3A5: influence of the apoprotein on heterolytic versus homolytic O-O bond cleavage. , 1995, Archives of biochemistry and biophysics.

[2]  A. Brash,et al.  Molecular cloning of an allene oxide synthase: a cytochrome P450 specialized for the metabolism of fatty acid hydroperoxides. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Role of radical formation at tyrosine 193 in the allene oxide synthase domain of a lipoxygenase-AOS fusion protein from coral. , 2003, Biochemistry.

[4]  H. Edelsbrunner,et al.  Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.

[5]  O. Boutaud,et al.  Identification of a naturally occurring peroxidase-lipoxygenase fusion protein. , 1997, Science.

[6]  W. Jentzen,et al.  Conservation of the conformation of the porphyrin macrocycle in hemoproteins. , 1998, Biophysical journal.

[7]  Victor Guallar,et al.  Peripheral heme substituents control the hydrogen-atom abstraction chemistry in cytochromes P450 , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[8]  J. Haeggström,et al.  Leukotriene A4 hydrolase/aminopeptidase. Glutamate 271 is a catalytic residue with specific roles in two distinct enzyme mechanisms. , 2002, The Journal of biological chemistry.

[9]  P. Loewen,et al.  Diversity of structures and properties among catalases , 2003, Cellular and Molecular Life Sciences CMLS.

[10]  V. Ullrich,et al.  Prostacyclin and thromboxane synthases. , 1995, Journal of lipid mediators and cell signalling.

[11]  J. Tainer,et al.  Active and inhibited human catalase structures: ligand and NADPH binding and catalytic mechanism. , 2000, Journal of molecular biology.

[12]  D. Eisenberg,et al.  Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.

[13]  E. Corey,et al.  Biosynthesis of 8-R-HPETE and preclavulone-A from arachidonate in several species of caribbean coral. A widespread route to marine prostanoids. , 1988 .

[14]  O. Boutaud,et al.  Purification and Catalytic Activities of the Two Domains of the Allene Oxide Synthase-Lipoxygenase Fusion Protein of the CoralPlexaura homomalla * , 1999, The Journal of Biological Chemistry.

[15]  A. Brash,et al.  The origin of 15R-prostaglandins in the Caribbean coral Plexaura homomalla: Molecular cloning and expression of a novel cyclooxygenase , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[16]  A. Grechkin Clavulones and related tert-hydroxycyclopentenone fatty acids: occurrence, physiological activity and problem of biogenetic origin. , 1995, Journal of lipid mediators and cell signalling.

[17]  J. Hajdu,et al.  Ferryl intermediates of catalase captured by time-resolved Weissenberg crystallography and UV-VIS spectroscopy , 1996, Nature Structural Biology.

[18]  E. Corey,et al.  Identification of a new eicosanoid from in vitro biosynthetic experiments with clavularia viridis. Implications for the biosynthesis of clavulones. , 1985 .

[19]  O. Boutaud,et al.  Characterization of the coral allene oxide synthase active site with UV-visible absorption, magnetic circular dichroism, and electron paramagnetic resonance spectroscopy: evidence for tyrosinate ligation to the ferric enzyme heme iron. , 2001, Biochemistry.

[20]  C. Betzel,et al.  Structure of catalase-A from Saccharomyces cerevisiae. , 1999, Journal of molecular biology.

[21]  Yujun Zhang,et al.  Sequence and analysis of rice chromosome 4 , 2002, Nature.

[22]  L. Meijer,et al.  Allene oxide and aldehyde biosynthesis in starfish oocytes. , 1991, The Journal of biological chemistry.

[23]  Y. Nakamura,et al.  Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. , 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

[24]  A. Brash,et al.  Evidence of a Cyclooxygenase-related Prostaglandin Synthesis in Coral , 1999, The Journal of Biological Chemistry.

[25]  M. Klotz,et al.  Structure of the Clade 1 catalase, CatF of Pseudomonas syringae, at 1.8 Å resolution , 2003, Proteins.

[26]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[27]  J. Shelnutt,et al.  Planar-nonplanar conformational equilibrium in metal derivatives of octaethylporphyrin and meso-nitrooctaethylporphyrin , 1993 .

[28]  A. Brash,et al.  On non-cyclooxygenase prostaglandin synthesis in the sea whip coral, Plexaura homomalla: an 8(R)-lipoxygenase pathway leads to formation of an alpha-ketol and a Racemic prostanoid. , 1987, The Journal of biological chemistry.

[29]  T. K. Chandrashekar,et al.  Nonplanar porphyrins and their biological relevance: ground and excited state dynamics , 1995 .

[30]  P. Loewen,et al.  Diversity of properties among catalases. , 2002, Archives of biochemistry and biophysics.

[31]  O. Werz 5-lipoxygenase: cellular biology and molecular pharmacology. , 2002, Current drug targets. Inflammation and allergy.

[32]  E. Corey,et al.  Intermediacy of 8-(R)-HPETE in the conversion of arachidonic acid to pre-clavulone a by Clavularia viridis. Implications for the biosynthesis of marine prostanoids , 1987 .

[33]  Kevin M. Smith,et al.  Electrochemistry and Spectroelectrochemistry of .sigma.-Bonded Iron(III) Porphyrins with Nonplanar Porphyrin Rings. Reactions of (OETPP)Fe(R) and (OETPP)FeCl, Where R = C6H5, C6F4H, or C6F5 and OETPP Is the Dianion of 2,3,7,8,12,13,17,18-Octaethyl-5,10,15,20- tetraphenylporphyrin , 1995 .

[34]  Ivo Feussner,et al.  The lipoxygenase pathway. , 2003, Annual review of plant biology.

[35]  A. Brash,et al.  Structural and functional comparison of 15S- and 15R-specific cyclooxygenases from the coral Plexaura homomalla. , 2004, European journal of biochemistry.

[36]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[37]  M T Green,et al.  The structure and spin coupling of catalase compound I: a study of noncovalent effects. , 2001, Journal of the American Chemical Society.