Migrations of cancer cells through the lens of phylogenetic biogeography

[1]  Maxwell D. Sanderford,et al.  PathFinder: Bayesian inference of clone migration histories in cancer. , 2020, Bioinformatics.

[2]  Ted E. Natoli,et al.  A metastasis map of human cancer cell lines , 2020, Nature.

[3]  Maxwell D. Sanderford,et al.  PathFinder: Bayesian inference of clone migration histories in cancer , 2020, bioRxiv.

[4]  Jeffrey J. Quinn,et al.  Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts , 2020, Science.

[5]  Sudhir Kumar,et al.  Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data , 2020, Scientific Reports.

[6]  M. Mildner,et al.  Re-epithelialization and immune cell behaviour in an ex vivo human skin model , 2020, Scientific Reports.

[7]  Sudhir Kumar,et al.  Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach , 2019, Cancers.

[8]  Yan Yu,et al.  RASP 4: ancestral state reconstruction tool for multiple genes and characters. , 2019, Molecular biology and evolution.

[9]  Jeffrey H. Chuang,et al.  Molecular Biology and Evolution of Cancer: From Discovery to Action , 2019, Molecular biology and evolution.

[10]  David Posada,et al.  Rapid evolution and biogeographic spread in a colorectal cancer , 2019, Nature Communications.

[11]  T. Ideker,et al.  Identifying Epistasis in Cancer Genomes: A Delicate Affair , 2019, Cell.

[12]  M. S. Artigas,et al.  Genetic interaction analysis among oncogenesis-related genes revealed novel genes and networks in lung cancer development , 2019, Oncotarget.

[13]  Benjamin J. Raphael,et al.  Inferring Parsimonious Migration Histories for Metastatic Cancers , 2018, Nature Genetics.

[14]  G. Mayhew,et al.  Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal , 2018, Cell.

[15]  P. Lønning,et al.  Genomic Evolution of Breast Cancer Metastasis and Relapse , 2017, Cancer cell.

[16]  Francesca D. Ciccarelli,et al.  MEGA-V: detection of variant gene sets in patient cohorts , 2016, Bioinform..

[17]  Christopher A. Miller,et al.  Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases , 2016, PLoS medicine.

[18]  Stephen Fox,et al.  The Subclonal Architecture of Metastatic Breast Cancer: Results from a Prospective Community-Based Rapid Autopsy Program “CASCADE” , 2016, PLoS medicine.

[19]  N. Matzke,et al.  Model selection in historical biogeography reveals that founder-event speciation is a crucial process in Island Clades. , 2014, Systematic biology.

[20]  Michael J. Landis,et al.  Bayesian analysis of biogeography when the number of areas is large. , 2013, Systematic biology.

[21]  Sudhir Kumar,et al.  MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis , 2012, Bioinform..

[22]  P. A. Futreal,et al.  Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. , 2012, The New England journal of medicine.

[23]  Fredrik Ronquist,et al.  Phylogenetic Methods in Biogeography , 2011 .

[24]  Xingjin He,et al.  S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories. , 2010, Molecular phylogenetics and evolution.

[25]  Stephen A. Smith,et al.  Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. , 2008, Systematic biology.

[26]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[27]  L. Brundin ON THE REAL NATURE OF TRANSANTARCTIC RELATIONSHIPS , , 1965 .

[28]  N. Matzke Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing , 2013 .

[29]  W. Hennig Phylogenetic Systematics , 2002 .