Members of the Uncultured Taxon OP1 (“Acetothermia”) Predominate in the Microbial Community of an Alkaline Hot Spring at East-Tuvinian Upland

[1]  P. Pevzner,et al.  metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.

[2]  A. Neubeck,et al.  Microbial Community Structure in a Serpentine-Hosted Abiotic Gas Seepage at the Chimaera Ophiolite, Turkey , 2017, Applied and Environmental Microbiology.

[3]  Jose A Navas-Molina,et al.  Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns , 2017, mSystems.

[4]  N. Ravin,et al.  Stable and Variable Parts of Microbial Community in Siberian Deep Subsurface Thermal Aquifer System Revealed in a Long-Term Monitoring Study , 2016, Front. Microbiol..

[5]  A. Chatziioannou,et al.  Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases , 2016, Scientific Reports.

[6]  B. Namsaraev,et al.  Organotrophic bacteria of the Baikal Rift Zone hot springs , 2016, Microbiology.

[7]  E. Bonch‐Osmolovskaya,et al.  Thermostilla marina gen. nov., sp. nov., a thermophilic, facultatively anaerobic planctomycete isolated from a shallow submarine hydrothermal vent. , 2016, International journal of systematic and evolutionary microbiology.

[8]  Brian C. Thomas,et al.  Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs , 2016, mBio.

[9]  T. Kondrat'eva,et al.  Biooxidation of a double-refractory gold-bearing sulfide ore concentrate , 2015, Microbiology.

[10]  S. Toshchakov,et al.  Structure of the archaeal community in the Black Sea photic zone , 2015, Microbiology.

[11]  M. A. Egorova,et al.  Trophic patterns of functioning and microbial profile of the evolutionally established associated kefir grains culture , 2015, Microbiology.

[12]  Connor T. Skennerton,et al.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.

[13]  B. Namsaraev,et al.  Anoxygenic phototrophic bacteria from microbial communities of Goryachinsk thermal spring (Baikal Area, Russia) , 2014, Microbiology.

[14]  E. Bonch‐Osmolovskaya,et al.  Mobilitalea sibirica gen. nov., sp. nov., a halotolerant polysaccharide-degrading bacterium. , 2014, International journal of systematic and evolutionary microbiology.

[15]  D. Gilichinsky,et al.  Archaeal diversity in permafrost deposits of Bunger Hills Oasis and King George Island (Antarctica) according to the 16S rRNA gene sequencing , 2014, Microbiology.

[16]  Jacques Ravel,et al.  An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform , 2014, Microbiome.

[17]  S. Hanada.  The Phylum Chloroflexi, the Family Chloroflexaceae , and the Related Phototrophic Families Oscillochloridaceae and Roseiflexaceae , 2014 .

[18]  S. Gavrilov,et al.  Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae. , 2013, Environmental microbiology.

[19]  P. Hugenholtz,et al.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes , 2013, Nature Biotechnology.

[20]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[21]  M. Klotz,et al.  Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations. , 2013, Biochimica et biophysica acta.

[22]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[23]  E. Bonch‐Osmolovskaya,et al.  Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae. , 2013, International journal of systematic and evolutionary microbiology.

[24]  Edward C. Uberbacher,et al.  Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..

[25]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[26]  M. Hattori,et al.  A Deeply Branching Thermophilic Bacterium with an Ancient Acetyl-CoA Pathway Dominates a Subsurface Ecosystem , 2012, PloS one.

[27]  Y. Kamagata,et al.  Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10. , 2011, International journal of systematic and evolutionary microbiology.

[28]  M. Hattori,et al.  Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group , 2010, Nucleic acids research.

[29]  A. Duchkov,et al.  Estimation of heat flow in Tuva from data on helium isotopes in thermal mineral springs , 2010 .

[30]  Kaoru Yamaguchi,et al.  Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov. , 2009, International journal of systematic and evolutionary microbiology.

[31]  N. Suzina,et al.  Aerobic methanotrophs from the coastal thermal springs of Lake Baikal , 2009, Microbiology.

[32]  U. Maier,et al.  The Ultramicrobacterium “Elusimicrobium minutum” gen. nov., sp. nov., the First Cultivated Representative of the Termite Group 1 Phylum , 2009, Applied and Environmental Microbiology.

[33]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[34]  P. Vignais,et al.  Occurrence, classification, and biological function of hydrogenases: an overview. , 2007, Chemical reviews.

[35]  V. Yurkov,et al.  The Structure and Biogeochemical Activity of the Phototrophic Communities from the Bol'sherechenskii Alkaline Hot Spring , 2003, Microbiology.

[36]  B. Roe,et al.  Bacterial Diversity and Sulfur Cycling in a Mesophilic Sulfide-Rich Spring , 2003, Applied and Environmental Microbiology.

[37]  Philip Hugenholtz,et al.  Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity , 1998, Journal of bacteriology.