Aggregation Algorithm Towards Large-Scale Boolean Network Analysis
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[1] Giovanni De Micheli,et al. An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments , 2007, RECOMB.
[2] Steffen Klamt,et al. A methodology for the structural and functional analysis of signaling and regulatory networks , 2006, BMC Bioinformatics.
[3] S. Kauffman. Metabolic stability and epigenesis in randomly constructed genetic nets. , 1969, Journal of theoretical biology.
[4] Robert E. Tarjan,et al. Depth-First Search and Linear Graph Algorithms , 1972, SIAM J. Comput..
[5] Narsingh Deo,et al. On Algorithms for Enumerating All Circuits of a Graph , 1976, SIAM J. Comput..
[6] Daizhan Cheng,et al. A Linear Representation of Dynamics of Boolean Networks , 2010, IEEE Transactions on Automatic Control.
[7] E. Davidson,et al. Modeling transcriptional regulatory networks. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.
[8] Robert D. Leclerc. Survival of the sparsest: robust gene networks are parsimonious , 2008, Molecular systems biology.
[9] Michael J. Watts,et al. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS Publication Information , 2020, IEEE Transactions on Neural Networks and Learning Systems.
[10] T. Helikar,et al. Emergent decision-making in biological signal transduction networks , 2008, Proceedings of the National Academy of Sciences.
[11] Daizhan Cheng,et al. Input-state incidence matrix of Boolean control networks and its applications , 2010, Syst. Control. Lett..
[12] John Maloney,et al. Finding Cycles in Synchronous Boolean Networks with Applications to Biochemical Systems , 2003, Int. J. Bifurc. Chaos.
[13] Réka Albert,et al. Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action , 2010, Molecular systems biology.
[14] Ting Chen,et al. Modeling Gene Expression with Differential Equations , 1998, Pacific Symposium on Biocomputing.
[15] Francesco Masulli,et al. A survey of kernel and spectral methods for clustering , 2008, Pattern Recognit..
[16] S Fuhrman,et al. Reveal, a general reverse engineering algorithm for inference of genetic network architectures. , 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[17] R. Albert,et al. Discrete dynamic modeling of cellular signaling networks. , 2009, Methods in enzymology.
[18] Kwang-Hyun Cho,et al. Reduction of Complex Signaling Networks to a Representative Kernel , 2011, Science Signaling.
[19] D. Cheng,et al. Analysis and control of Boolean networks: A semi-tensor product approach , 2010, 2009 7th Asian Control Conference.
[20] Er-Wei Bai,et al. A Web Aggregation Approach for Distributed Randomized PageRank Algorithms , 2012, IEEE Transactions on Automatic Control.
[21] Qianchuan Zhao,et al. A remark on "Scalar equations for synchronous Boolean networks with biological Applications" by C. Farrow, J. Heidel, J. Maloney, and J. Rogers , 2005, IEEE Transactions on Neural Networks.
[22] Daizhan Cheng,et al. Approximation of boolean networks , 2012, Proceedings of the 10th World Congress on Intelligent Control and Automation.
[23] Tamer Kahveci,et al. Scalable Steady State Analysis of Boolean Biological Regulatory Networks , 2009, PloS one.
[24] Terence P. Speed,et al. Sparse combinatorial inference with an application in cancer biology , 2009, Bioinform..
[25] Hidde de Jong,et al. Modeling and Simulation of Genetic Regulatory Systems: A Literature Review , 2002, J. Comput. Biol..
[26] Daizhan Cheng,et al. Model Construction of Boolean Network via Observed Data , 2011, IEEE Transactions on Neural Networks.
[27] Donald B. Johnson,et al. Finding All the Elementary Circuits of a Directed Graph , 1975, SIAM J. Comput..
[28] E. Meyerowitz,et al. Genome-Wide Analysis of Gene Expression during Early Arabidopsis Flower Development , 2006, PLoS genetics.
[29] E A Leicht,et al. Community structure in directed networks. , 2007, Physical review letters.
[30] H. Othmer,et al. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. , 2003, Journal of theoretical biology.