High-Resolution Airborne UAV Imagery to Assess Olive Tree Crown Parameters Using 3D Photo Reconstruction: Application in Breeding Trials

The development of reliable methods for the estimation of crown architecture parameters is a key issue for the quantitative evaluation of tree crop adaptation to environment conditions and/or growing system. In the present work, we developed and tested the performance of a method based on low-cost unmanned aerial vehicle (UAV) imagery for the estimation of olive crown parameters (tree height and crown diameter) in the framework of olive tree breeding programs, both on discontinuous and continuous canopy cropping systems. The workflow involved the image acquisition with consumer-grade cameras on board a UAV and orthomosaic and digital surface model generation using structure-from-motion image reconstruction (without ground point information). Finally, geographical information system analyses and object-based classification were used for the calculation of tree parameters. Results showed a high agreement between remote sensing estimation and field measurements of crown parameters. This was observed both at the individual tree/hedgerow level (relative RMSE from 6% to 20%, depending on the particular case) and also when average values for different genotypes were considered for phenotyping purposes (relative RMSE from 3% to 16%), pointing out the interest and applicability of these data and techniques in the selection scheme of breeding programs.

[1]  Pablo J. Zarco-Tejada,et al.  Tree height quantification using very high resolution imagery acquired from an unmanned aerial vehicle (UAV) and automatic 3D photo-reconstruction methods , 2014 .

[2]  P. Zarco-Tejada,et al.  Spatio-temporal patterns of chlorophyll fluorescence and physiological and structural indices acquired from hyperspectral imagery as compared with carbon fluxes measured with eddy covariance , 2013 .

[3]  Thomas Blaschke,et al.  Object based image analysis for remote sensing , 2010 .

[4]  Joanne C. White,et al.  Lidar sampling for large-area forest characterization: A review , 2012 .

[5]  Christian Messier,et al.  Assessing the Potential of Low-Cost 3D Cameras for the Rapid Measurement of Plant Woody Structure , 2013, Sensors.

[6]  Pablo J. Zarco-Tejada,et al.  Detecting water stress effects on fruit quality in orchards with time-series PRI airborne imagery , 2010 .

[7]  John R. Miller,et al.  Imaging chlorophyll fluorescence with an airborne narrow-band multispectral camera for vegetation stress detection , 2009 .

[8]  Philippe Lucidarme,et al.  On the use of depth camera for 3D phenotyping of entire plants , 2012 .

[9]  L. Rallo,et al.  Preliminary results of an olive cultivar trial at high density , 2007 .

[10]  Arko Lucieer,et al.  An Automated Technique for Generating Georectified Mosaics from Ultra-High Resolution Unmanned Aerial Vehicle (UAV) Imagery, Based on Structure from Motion (SfM) Point Clouds , 2012, Remote. Sens..

[11]  Pablo J. Zarco-Tejada,et al.  Thermal and Narrowband Multispectral Remote Sensing for Vegetation Monitoring From an Unmanned Aerial Vehicle , 2009, IEEE Transactions on Geoscience and Remote Sensing.

[12]  Juha Hyyppä,et al.  An International Comparison of Individual Tree Detection and Extraction Using Airborne Laser Scanning , 2012, Remote. Sens..

[13]  L. Rallo Breeding Oil and Table Olives for Mechanical Harvesting in Spain , 2014 .

[14]  J. Martonchik,et al.  Large area mapping of southwestern forest crown cover, canopy height, and biomass using the NASA Multiangle Imaging Spectro-Radiometer , 2008 .

[15]  P. Zarco-Tejadaa,et al.  Estimating leaf carotenoid content in vineyards using high resolution hyperspectral imagery acquired from an unmanned aerial vehicle ( UAV ) , 2013 .

[16]  Barbara Koch,et al.  Automatic Single Tree Detection in Plantations using UAV-based Photogrammetric Point clouds , 2014 .

[17]  R A Diaz-Varela,et al.  Automatic identification of agricultural terraces through object-oriented analysis of very high resolution DSMs and multispectral imagery obtained from an unmanned aerial vehicle. , 2014, Journal of environmental management.

[18]  L. Rallo,et al.  Breeding for Early Bearing in Olive , 2007 .

[19]  B. Koch,et al.  UAV-BASED PHOTOGRAMMETRIC POINT CLOUDS – TREE STEM MAPPING IN OPEN STANDS IN COMPARISON TO TERRESTRIAL LASER SCANNER POINT CLOUDS , 2013 .

[20]  K. Moffett,et al.  Remote Sens , 2015 .

[21]  Pablo J. Zarco-Tejada,et al.  Mapping canopy conductance and CWSI in olive orchards using high resolution thermal remote sensing imagery , 2009 .

[22]  A. Escolà,et al.  Obtaining the three-dimensional structure of tree orchards from remote 2D terrestrial LIDAR scanning , 2009 .

[23]  L. Velasco,et al.  Initial selection steps in olive breeding programs , 2015, Euphytica.

[24]  D. Passoni,et al.  Use of Unmanned Aerial Systems for multispectral survey and tree classification: a test in a park area of northern Italy , 2014 .

[25]  Livio Pinto,et al.  Experimental analysis of different software packages for orientation and digital surface modelling from UAV images , 2014, Earth Science Informatics.

[26]  P. Zarco-Tejada,et al.  Fluorescence, temperature and narrow-band indices acquired from a UAV platform for water stress detection using a micro-hyperspectral imager and a thermal camera , 2012 .

[27]  C. Strecha,et al.  The Accuracy of Automatic Photogrammetric Techniques on Ultra-light UAV Imagery , 2012 .

[28]  Pablo J. Zarco-Tejada,et al.  Field characterization of olive (Olea europaea L.) tree crown architecture using terrestrial laser scanning data , 2011 .

[29]  R. Sanz,et al.  A review of methods and applications of the geometric characterization of tree crops in agricultural activities , 2012 .

[30]  J. Fripp,et al.  A novel mesh processing based technique for 3D plant analysis , 2012, BMC Plant Biology.

[31]  S. Robson,et al.  Straightforward reconstruction of 3D surfaces and topography with a camera: Accuracy and geoscience application , 2012 .

[32]  E. Fereresa,et al.  Almond tree canopy temperature reveals intra-crown variability that is water stress-dependent , 2011 .

[33]  A. Rango,et al.  UAS remote sensing missions for rangeland applications , 2011 .

[34]  P. Zarco-Tejada,et al.  Mapping radiation interception in row-structured orchards using 3D simulation and high-resolution airborne imagery acquired from a UAV , 2012, Precision Agriculture.

[35]  R. Rosa,et al.  Reliable and relevant qualitative descriptors for evaluating complex architectural traits in olive progenies , 2012 .

[36]  P. Zarco-Tejada,et al.  Determining Biophysical Parameters for Olive Trees Using CASI-Airborne and Quickbird-Satellite Imagery , 2011 .

[37]  L. Gómez Chova,et al.  Land cover classification of VHR airborne images for citrus grove identification , 2011 .

[38]  Arko Lucieer,et al.  Development of a UAV-LiDAR System with Application to Forest Inventory , 2012, Remote. Sens..

[39]  Lutz Plümer,et al.  Low-Cost 3D Systems: Suitable Tools for Plant Phenotyping , 2014, Sensors.

[40]  Pierre-Eric Lauri,et al.  Analyzing Fruit Tree Architecture: Implications for Tree Management and Fruit Production , 2010 .

[41]  E. Costes,et al.  Genetic determinism of the vegetative and reproductive traits in an F1 olive tree progeny , 2012, Tree Genetics & Genomes.

[42]  U. Benz,et al.  Multi-resolution, object-oriented fuzzy analysis of remote sensing data for GIS-ready information , 2004 .