Basic Helix-Loop-Helix Transcription Factors: Regulators for Plant Growth Development and Abiotic Stress Responses

Plant basic helix-loop-helix (bHLH) transcription factors are involved in many physiological processes, and they play important roles in the abiotic stress responses. The literature related to genome sequences has increased, with genome-wide studies on the bHLH transcription factors in plants. Researchers have detailed the functionally characterized bHLH transcription factors from different aspects in the model plant Arabidopsis thaliana, such as iron homeostasis and abiotic stresses; however, other important economic crops, such as rice, have not been summarized and highlighted. The bHLH members in the same subfamily have similar functions; therefore, unraveling their regulatory mechanisms will help us to identify and understand the roles of some of the unknown bHLH transcription factors in the same subfamily. In this review, we summarize the available knowledge on functionally characterized bHLH transcription factors according to four categories: plant growth and development; metabolism synthesis; plant signaling, and abiotic stress responses. We also highlight the roles of the bHLH transcription factors in some economic crops, especially in rice, and discuss future research directions for possible genetic applications in crop breeding.

[1]  P. Ahmad,et al.  Abscisic acid: Metabolism, transport, crosstalk with other plant growth regulators, and its role in heavy metal stress mitigation , 2022, Frontiers in Plant Science.

[2]  Xiaoqing Chen,et al.  Pepper bHLH transcription factor CabHLH035 contributes to salt tolerance by modulating ion homeostasis and proline biosynthesis , 2022, Horticulture research.

[3]  Rongrong Liu,et al.  Genome-wide characterization and expression analysis of bHLH gene family in physic nut (Jatropha curcas L.) , 2022, PeerJ.

[4]  Guangyan Feng,et al.  Genome-wide identification and characterization of bHLH family genes from orchardgrass and the functional characterization of DgbHLH46 and DgbHLH128 in drought and salt tolerance , 2022, Functional & Integrative Genomics.

[5]  Zhigang Han,et al.  Genome-wide analysis of basic helix–loop–helix genes in Dendrobium catenatum and functional characterization of DcMYC2 in jasmonate-mediated immunity to Sclerotium delphinii , 2022, Frontiers in Plant Science.

[6]  Xiao-Zhang Yu,et al.  Proline-mediated regulation on jasmonate signals repressed anthocyanin accumulation through the MYB-bHLH-WDR complex in rice under chromium exposure , 2022, Frontiers in Plant Science.

[7]  Yuanyuan Li,et al.  Genome-wide identification and characterization of the bHLH gene family and analysis of their potential relevance to chlorophyll metabolism in Raphanus sativus L , 2022, BMC genomics.

[8]  W. Wang,et al.  PpPIF8, a DELLA2-interacting protein, regulates peach shoot elongation possibly through auxin signaling. , 2022, Plant science : an international journal of experimental plant biology.

[9]  Youliang Peng,et al.  Uncovering Hierarchical Regulation among MYB-bHLH-WD40 Proteins and Manipulating Anthocyanin Pigmentation in Rice , 2022, International journal of molecular sciences.

[10]  Haiyan Lan,et al.  Genome-Wide Characterization and Analysis of the bHLH Transcription Factor Family in Suaeda aralocaspica, an Annual Halophyte With Single-Cell C4 Anatomy , 2022, Frontiers in Genetics.

[11]  A. Das,et al.  Functional characterization of ZmbHLH121, a bHLH transcription factor, focusing on Zea mays kernel development , 2022, Gene Reports.

[12]  Deguo Han,et al.  Overexpression of MxbHLH18 Increased Iron and High Salinity Stress Tolerance in Arabidopsis thaliana , 2022, International journal of molecular sciences.

[13]  Ting Chen,et al.  Systematic Analysis of bHLH Transcription Factors in Cassava Uncovers Their Roles in Postharvest Physiological Deterioration and Cyanogenic Glycosides Biosynthesis , 2022, Frontiers in Plant Science.

[14]  K. Tang,et al.  Basic Helix-Loop-Helix Transcription Factors AabHLH2 and AabHLH3 Function Antagonistically With AaMYC2 and Are Negative Regulators in Artemisinin Biosynthesis , 2022, Frontiers in Plant Science.

[15]  Feifei Lv,et al.  Genome-wide analysis of basic helix–loop–helix (bHLH) transcription factors in Aquilaria sinensis , 2022, Scientific Reports.

[16]  T. Ahmed,et al.  CRISPR/Cas9 Mediated Knockout of the OsbHLH024 Transcription Factor Improves Salt Stress Resistance in Rice (Oryza sativa L.) , 2022, Plants.

[17]  Xueyan Li,et al.  Genome-wide identification and expression analysis of bHLH transcription factors reveal their putative regulatory effects on petal nectar spur development in Aquilegia , 2022, bioRxiv.

[18]  P. Wigge,et al.  Phytochrome-Interacting Factors: a promising tool to improve crop productivity. , 2022, Journal of experimental botany.

[19]  Shixin Zhang,et al.  Genome-Wide Identification and Expression Analysis of MYC Transcription Factor Family Genes in Rubber Tree (Hevea brasiliensis Muell. Arg.) , 2022, Forests.

[20]  Ye Lu,et al.  Genomic Survey and Cold-Induced Expression Patterns of bHLH Transcription Factors in Liriodendron chinense (Hemsl) Sarg. , 2022, Forests.

[21]  W. Zhuang,et al.  Genome-wide identification and characterization of PdbHLH transcription factors related to anthocyanin biosynthesis in colored-leaf poplar (Populus deltoids) , 2022, BMC genomics.

[22]  P. Payton,et al.  Morphological analysis and stage determination of anther development in Sorghum [Sorghum bicolor (L.) Moench] , 2022, Planta.

[23]  K. He,et al.  OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice , 2022, Plant Cell Reports.

[24]  Mingjie Lv,et al.  BEAR1, a bHLH Transcription Factor, Controls Salt Response Genes to Regulate Rice Salt Response , 2022, Journal of Plant Biology.

[25]  M. Ariyarathne,et al.  Overexpression of the Selaginella lepidophylla bHLH transcription factor enhances water-use efficiency, growth, and development in Arabidopsis. , 2021, Plant science : an international journal of experimental plant biology.

[26]  OUP accepted manuscript , 2022, Journal Of Experimental Botany.

[27]  Hao Li,et al.  Disruption of the bHLH transcription factor Abnormal Tapetum 1 causes male sterility in watermelon , 2021, Horticulture Research.

[28]  Ying Zhu,et al.  The bHLH transcription factor regulated gene OsWIH2 is a positive regulator of drought tolerance in rice. , 2021, Plant physiology and biochemistry : PPB.

[29]  Hui Zhang,et al.  Fusion of the SRDX motif to OsPIL11 or OsPIL16 causes rice constitutively photomorphogenic phenotypes in darkness , 2021, Plant Growth Regulation.

[30]  Lingli Li,et al.  Genome-Wide Identification and Functional Analysis of the Basic Helix-Loop-Helix (bHLH) Transcription Family Reveals Candidate PtFBH Genes Involved in the Flowering Process of Populus trichocarpa , 2021, Forests.

[31]  Y. Sui,et al.  SbbHLH85, a bHLH member, modulates resilience to salt stress by regulating root hair growth in sorghum , 2021, Theoretical and Applied Genetics.

[32]  Hong-Gyu Kang,et al.  Identification of bHLH genes through genome-wide association study and antisense expression of ZjbHLH076/ZjICE1 influence tolerance to low temperature and salinity in Zoysia japonica. , 2021, Plant science : an international journal of experimental plant biology.

[33]  Hui Zhang,et al.  Fusion of the SRDX motif to OsPIL11 or OsPIL16 causes rice constitutively photomorphogenic phenotypes in darkness , 2021, Plant Growth Regulation.

[34]  T. Sawasaki,et al.  The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight , 2021, Plant Molecular Biology.

[35]  T. Sawasaki,et al.  The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight , 2021, Plant Molecular Biology.

[36]  Huogen Li,et al.  Genome-wide Analysis of Basic Helix-Loop-Helix Family Genes and Expression Analysis in Response to Drought and Salt Stresses in Hibiscus hamabo Sieb. et Zucc , 2021, International journal of molecular sciences.

[37]  Ze Wu,et al.  Characterization and functional analysis of LoUDT1, a bHLH transcription factor related to anther development in the lily oriental hybrid Siberia (Lilium spp.). , 2021, Plant physiology and biochemistry : PPB.

[38]  Aigen Fu,et al.  Basic Helix-Loop-Helix (bHLH) Transcription Factors Regulate a Wide Range of Functions in Arabidopsis , 2021, International journal of molecular sciences.

[39]  Ahmad Ali,et al.  Genome-Wide Identification and Expression Profiling of the bHLH Transcription Factor Gene Family in Saccharum spontaneum Under Bacterial Pathogen Stimuli , 2021, Tropical Plant Biology.

[40]  Anket Sharma,et al.  Role of jasmonic acid in plants: the molecular point of view , 2021, Plant Cell Reports.

[41]  Z. Wen,et al.  Genome-wide identification and expression analysis of bHLH transcription factor family in response to cold stress in sweet cherry (Prunus avium L.) , 2021 .

[42]  P. Seo,et al.  Ca2+talyzing Initial Responses to Environmental Stresses. , 2021, Trends in plant science.

[43]  Lin Tan,et al.  Genome-Wide Identification, Characterization of bHLH Transcription Factors in Mango , 2021 .

[44]  M. Margis-Pinheiro,et al.  Tightly controlled expression of OsbHLH35 is critical for anther development in rice. , 2021, Plant science : an international journal of experimental plant biology.

[45]  Shilin Chen,et al.  Genome-wide characterization and analysis of bHLH transcription factors in Panax ginseng , 2018, Acta pharmaceutica Sinica. B.

[46]  OUP accepted manuscript , 2021, Plant And Cell Physiology.

[47]  Lingxia Sun,et al.  MfbHLH38, a Myrothamnus flabellifolia bHLH transcription factor, confers tolerance to drought and salinity stresses in Arabidopsis , 2020, BMC plant biology.

[48]  Qinglin Ke,et al.  Genome-wide Identification, Evolution and Expression Analysis of Basic Helix-loop-helix (bHLH) Gene Family in Barley (Hordeum vulgare L.) , 2020, Current genomics.

[49]  Xiaoshan Lin,et al.  Genome-Wide Identification and Expression Analysis of the Barrel Medic (Medicago truncatula) and Alfalfa (Medicago sativa L.) Basic Helix-Loop-Helix Transcription Factor Family Under Salt and Drought Stresses , 2020, Journal of Plant Growth Regulation.

[50]  Yuan Qin,et al.  Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response , 2020, BMC Genomics.

[51]  S. Bae,et al.  Knockout of SlMS10 Gene (Solyc02g079810) Encoding bHLH Transcription Factor Using CRISPR/Cas9 System Confers Male Sterility Phenotype in Tomato , 2020, Plants.

[52]  H. Shou,et al.  OsIRO3 Plays an Essential Role in Iron Deficiency Responses and Regulates Iron Homeostasis in Rice , 2020, Plants.

[53]  F. Xu,et al.  Genome-wide identification and characterization of bHLH family genes from Ginkgo biloba , 2020, Scientific Reports.

[54]  N. Shabek,et al.  Structural insights into photoactivation of plant Cryptochrome-2 , 2020, bioRxiv.

[55]  Yanhe Lang,et al.  Basic Helix-Loop-Helix (bHLH) transcription factor family in yellow horn (Xanthoceras sorbifolia Bunge): Genome-wide characterization, chromosome location, phylogeny, structures and expression patterns. , 2020, International journal of biological macromolecules.

[56]  Zhiqiang Jin,et al.  Genome-Wide Analysis of Basic Helix-Loop-Helix Transcription Factors to Elucidate Candidate Genes Related to Fruit Ripening and Stress in Banana (Musa acuminata L. AAA Group, cv. Cavendish) , 2020, Frontiers in Plant Science.

[57]  Haiyan Li,et al.  Genome-wide identification of Osmanthus fragrans bHLH transcription factors and their expression analysis in response to abiotic stress , 2020 .

[58]  Jeongsik Kim,et al.  A novel basic helix-loop-helix transcription factor, ZjICE2 from Zoysia japonica confers abiotic stress tolerance to transgenic plants via activating the DREB/CBF regulon and enhancing ROS scavenging , 2020, Plant Molecular Biology.

[59]  A. Raza,et al.  Plant Adaptation and Tolerance to Environmental Stresses: Mechanisms and Perspectives , 2020 .

[60]  V. Okatan,et al.  Polyphenol content and antioxidant capacity of berries: A review , 2019 .

[61]  G. An,et al.  OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice , 2019, Plant Molecular Biology.

[62]  Hong-Gyu Kang,et al.  Zoysia japonica MYC type transcription factor ZjICE1 regulates cold tolerance in transgenic Arabidopsis. , 2019, Plant science : an international journal of experimental plant biology.

[63]  Yong-chen Du,et al.  A putative bHLH transcription factor is a candidate gene for male sterile 32, a locus affecting pollen and tapetum development in tomato , 2019, Horticulture Research.

[64]  Yao-Yao Liu,et al.  Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera , 2019, PeerJ.

[65]  Gang Wang,et al.  Genome-Wide Identification, Expression Analysis, and Subcellular Localization of Carthamus tinctorius bHLH Transcription Factors , 2019, International journal of molecular sciences.

[66]  Lianzhe Wang,et al.  Genome-wide analysis of bHLH transcription factor family reveals their involvement in biotic and abiotic stress responses in wheat (Triticum aestivum L.) , 2019, 3 Biotech.

[67]  R. Deswal,et al.  Two ICE isoforms showing differential transcriptional regulation by cold and hormones participate in Brassica juncea cold stress signaling. , 2019, Gene.

[68]  R. Fang,et al.  Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice , 2019, Planta.

[69]  R. Fang,et al.  Phytochrome-interacting factor-like protein OsPIL15 integrates light and gravitropism to regulate tiller angle in rice , 2019, Planta.

[70]  A. Barone,et al.  A basic Helix-Loop-Helix (SlARANCIO), identified from a Solanum pennellii introgression line, affects carotenoid accumulation in tomato fruits , 2019, Scientific Reports.

[71]  Wei-Jie Chen,et al.  The ICE-like transcription factor HbICE2 is involved in jasmonate-regulated cold tolerance in the rubber tree (Hevea brasiliensis) , 2019, Plant Cell Reports.

[72]  Kaile Sun,et al.  The maize bHLH transcription factor bHLH105 confers manganese tolerance in transgenic tobacco. , 2019, Plant science : an international journal of experimental plant biology.

[73]  Amit Kumar,et al.  A basic helix loop helix transcription factor, AaMYC2-Like positively regulates artemisinin biosynthesis in Artemisia annua L. , 2019, Industrial Crops and Products.

[74]  Yan Lv,et al.  Impact of Climate Change on Crops Adaptation and Strategies to Tackle Its Outcome: A Review , 2019, Plants.

[75]  Jing Zhang,et al.  The basic helix‐loop‐helix transcription factor, OsPIL15, regulates grain size via directly targeting a purine permease gene OsPUP7 in rice , 2019, Plant biotechnology journal.

[76]  Chung-Mo Park,et al.  Thermal adaptation and plasticity of the plant circadian clock. , 2018, The New phytologist.

[77]  Min Wu,et al.  Basic helix-loop-helix gene family: Genome wide identification, phylogeny, and expression in Moso bamboo. , 2018, Plant physiology and biochemistry : PPB.

[78]  Fuqing Wu,et al.  Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.) , 2018, Rice.

[79]  Fuqing Wu,et al.  Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size in rice (Oryza sativa L.) , 2018, Rice.

[80]  S. Chander,et al.  OsICE1 transcription factor improves photosynthetic performance and reduces grain losses in rice plants subjected to drought , 2018, Environmental and Experimental Botany.

[81]  Mingliang Yu,et al.  Genome-wide analysis of basic helix-loop-helix superfamily members in peach , 2018, PloS one.

[82]  P. Yao,et al.  Overexpression of Fagopyrum tataricum FtbHLH2 enhances tolerance to cold stress in transgenic Arabidopsis. , 2018, Plant physiology and biochemistry : PPB.

[83]  Takuji Sasaki,et al.  EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum , 2018, PLoS genetics.

[84]  Qin Chen,et al.  Genome-Wide Identification and Characterization of the Potato bHLH Transcription Factor Family , 2018, Genes.

[85]  Hock Eng Khoo,et al.  Anthocyanidins and anthocyanins: colored pigments as food, pharmaceutical ingredients, and the potential health benefits , 2017, Food & nutrition research.

[86]  Gang Liang,et al.  POSITIVE REGULATOR OF IRON HOMEOSTASIS1, OsPRI1, Facilitates Iron Homeostasis1 , 2017, Plant Physiology.

[87]  Xingjun Wang,et al.  Genome-wide analysis of basic/helix-loop-helix gene family in peanut and assessment of its roles in pod development , 2017, PloS one.

[88]  Satoshi Ogawa,et al.  OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice. , 2017, Biochemical and biophysical research communications.

[89]  Chang-deok Han,et al.  RSL class I genes positively regulate root hair development in Oryza sativa. , 2017, The New phytologist.

[90]  Yanan He,et al.  Phytochrome B Negatively Affects Cold Tolerance by Regulating OsDREB1 Gene Expression through Phytochrome Interacting Factor-Like Protein OsPIL16 in Rice , 2016, Front. Plant Sci..

[91]  L. Dolan,et al.  Correction: ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon , 2016, PLoS genetics.

[92]  L. Dolan,et al.  ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon , 2016, PLoS genetics.

[93]  Shucai Wang,et al.  Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis , 2016, Scientific Reports.

[94]  Yong-chen Du,et al.  The Tomato Hoffman’s Anthocyaninless Gene Encodes a bHLH Transcription Factor Involved in Anthocyanin Biosynthesis That Is Developmentally Regulated and Induced by Low Temperatures , 2016, PloS one.

[95]  P. Quail,et al.  Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B. , 2016, Biochimica et biophysica acta.

[96]  Yucheng Wang,et al.  A bHLH gene from Tamarix hispida improves abiotic stress tolerance by enhancing osmotic potential and decreasing reactive oxygen species accumulation. , 2016, Tree physiology.

[97]  H. Takatsuji,et al.  Diterpenoid phytoalexin factor, a bHLH transcription factor, plays a central role in the biosynthesis of diterpenoid phytoalexins in rice. , 2015, The Plant journal : for cell and molecular biology.

[98]  Shilin Chen,et al.  Genome-wide characterisation and analysis of bHLH transcription factors related to tanshinone biosynthesis in Salvia miltiorrhiza , 2015, Scientific Reports.

[99]  V. Stanys,et al.  Expression and Anthocyanin Biosynthesis-Modulating Potential of Sweet Cherry (Prunus avium L.) MYB10 and bHLH Genes , 2015, PloS one.

[100]  Yi-Yun Chen,et al.  Genome-wide analysis of basic helix−loop−helix family transcription factors and their role in responses to abiotic stress in carrot , 2015, Molecular Breeding.

[101]  W. Haggag,et al.  Agriculture biotechnology for management of multiple biotic and abiotic environmental stress in crops , 2015 .

[102]  H. Ling,et al.  Genome-wide identification and characterization of the bHLH gene family in tomato , 2015, BMC Genomics.

[103]  R. Dolferus,et al.  To grow or not to grow: a stressful decision for plants. , 2014, Plant science : an international journal of experimental plant biology.

[104]  Richard D Vierstra,et al.  Phytochromes: An Atomic Perspective on Photoactivation and Signaling , 2014, Plant Cell.

[105]  Yan Dong,et al.  A novel bHLH transcription factor PebHLH35 from Populus euphratica confers drought tolerance through regulating stomatal development, photosynthesis and growth in Arabidopsis. , 2014, Biochemical and biophysical research communications.

[106]  Md. Abdur Rahim,et al.  Regulation of anthocyanin biosynthesis in peach fruits , 2014, Planta.

[107]  Yingying Wang,et al.  Overexpression of OsPIL15, a phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice. , 2014, Journal of integrative plant biology.

[108]  Dabing Zhang,et al.  The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development[C][W] , 2014, Plant Cell.

[109]  Y. Li,et al.  Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis) , 2014, Molecular Genetics and Genomics.

[110]  Ling Yuan,et al.  Transcriptional regulation of secondary metabolite biosynthesis in plants. , 2013, Biochimica et biophysica acta.

[111]  R. Singh,et al.  Transcription factors, sucrose, and sucrose metabolic genes interact to regulate potato phenylpropanoid metabolism , 2013, Journal of experimental botany.

[112]  L. Jaakola,et al.  New insights into the regulation of anthocyanin biosynthesis in fruits. , 2013, Trends in plant science.

[113]  G. Choi,et al.  Phytochrome-interacting factors have both shared and distinct biological roles , 2013, Molecules and cells.

[114]  Dabing Zhang,et al.  EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice , 2013, Nature Communications.

[115]  Yinghui Ying,et al.  Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa. , 2013, Plant, cell & environment.

[116]  H. Sassa,et al.  An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG , 2012, Breeding science.

[117]  H. Sassa,et al.  Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice , 2012, PloS one.

[118]  C. Tonelli,et al.  Recent advances on the regulation of anthocyanin synthesis in reproductive organs. , 2011, Plant science : an international journal of experimental plant biology.

[119]  A. Goossens,et al.  The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade , 2011, Plant Cell.

[120]  M. Miguel Anthocyanins: Antioxidant and/or anti-inflammatory activities , 2011 .

[121]  S. Iida,et al.  A bHLH transcription factor, DvIVS, is involved in regulation of anthocyanin synthesis in dahlia (Dahlia variabilis) , 2011, Journal of experimental botany.

[122]  M. Iwaya-Inoue,et al.  Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation , 2011 .

[123]  L. Dolan,et al.  Root hairs: development, growth and evolution at the plant-soil interface , 2011, Plant and Soil.

[124]  Christian Kappel,et al.  Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway. , 2011, Journal of experimental botany.

[125]  Yeon-Ki Kim,et al.  OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice. , 2011, The Plant journal : for cell and molecular biology.

[126]  Yinghui Ying,et al.  Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa , 2010, BMC Plant Biology.

[127]  D. Robertson,et al.  Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae1[W] , 2010, Plant Physiology.

[128]  L. Dolan,et al.  Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants , 2009, Molecular biology and evolution.

[129]  M. Saltveit Synthesis and Metabolism of Phenolic Compounds , 2009 .

[130]  C. Goh Phototropins and chloroplast activity in plant blue light signaling , 2009, Plant signaling & behavior.

[131]  O. Fursova,et al.  Identification of ICE2, a gene involved in cold acclimation which determines freezing tolerance in Arabidopsis thaliana. , 2009, Gene.

[132]  S. Jagadish,et al.  Climate change affecting rice production: the physiological and agronomic basis for possible adaptation strategies , 2009 .

[133]  Jonathan D. G. Jones,et al.  Role of plant hormones in plant defence responses , 2009, Plant Molecular Biology.

[134]  T. Yoshizumi,et al.  RETARDED GROWTH OF EMBRYO1, a New Basic Helix-Loop-Helix Protein, Expresses in Endosperm to Control Embryo Growth1[W] , 2008, Plant Physiology.

[135]  Hui Shen,et al.  Phytochrome Interacting Factors: central players in phytochrome-mediated light signaling networks. , 2007, Trends in plant science.

[136]  G. Ditta,et al.  The HECATE genes regulate female reproductive tract development in Arabidopsis thaliana , 2007, Development.

[137]  T. Mizuno,et al.  Characterization of a Set of Phytochrome-Interacting Factor-Like bHLH Proteins in Oryza sativa , 2007, Bioscience, biotechnology, and biochemistry.

[138]  Morgane Thomas-Chollier,et al.  Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics , 2007, BMC Evolutionary Biology.

[139]  Hong Ma,et al.  Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor , 2006, Development.

[140]  Hong Ma,et al.  Genome-Wide Analysis of Basic/Helix-Loop-Helix Transcription Factor Family in Rice and Arabidopsis1[W] , 2006, Plant Physiology.

[141]  I. Hwang,et al.  Rice Undeveloped Tapetum1 Is a Major Regulator of Early Tapetum Developmentw⃞ , 2005, The Plant Cell Online.

[142]  E. Minami,et al.  Involvement of the Basic Helix-Loop-Helix Transcription Factor RERJ1 in Wounding and Drought Stress Responses in Rice Plants , 2005, Bioscience, biotechnology, and biochemistry.

[143]  R. Dixon,et al.  Proanthocyanidins--a final frontier in flavonoid research? , 2005, The New phytologist.

[144]  A. Roeder,et al.  Control of Fruit Patterning in Arabidopsis by INDEHISCENT , 2004, Cell.

[145]  E. Schäfer,et al.  Light perception and signalling in higher plants. , 2003, Current opinion in plant biology.

[146]  E. Huq,et al.  The Arabidopsis Basic/Helix-Loop-Helix Transcription Factor Family Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.013839. , 2003, The Plant Cell Online.

[147]  P. Bailey,et al.  The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. , 2003, Molecular biology and evolution.

[148]  Jian-Kang Zhu,et al.  ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. , 2003, Genes & development.

[149]  S. Gilroy,et al.  Root Hair Development , 2002, Journal of Plant Growth Regulation.

[150]  J. Ecker,et al.  Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. , 2002, Genetics.

[151]  Valérie Ledent,et al.  Phylogenetic analysis of the human basic helix-loop-helix proteins , 2002, Genome Biology.

[152]  V. Sundaresan,et al.  The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence , 2001, Current Biology.

[153]  M. Vervoort,et al.  The basic helix-loop-helix protein family: comparative genomics and phylogenetic analysis. , 2001, Genome research.

[154]  J. Schiefelbein,et al.  Constructing a plant cell. The genetic control of root hair development. , 2000, Plant physiology.

[155]  J. Riechmann,et al.  A genomic perspective on plant transcription factors. , 2000, Current opinion in plant biology.

[156]  L. Lepiniec,et al.  The TT8 Gene Encodes a Basic Helix-Loop-Helix Domain Protein Required for Expression of DFR and BAN Genes in Arabidopsis Siliques , 2000, Plant Cell.

[157]  K. Robinson,et al.  SURVEY AND SUMMARY: Saccharomyces cerevisiae basic helix-loop-helix proteins regulate diverse biological processes. , 2000, Nucleic acids research.

[158]  D. Jones,et al.  Through form to function: root hair development and nutrient uptake. , 2000, Trends in plant science.

[159]  William R. Atchley,et al.  Positional Dependence, Cliques, and Predictive Motifs in the bHLH Protein Domain , 1999, Journal of Molecular Evolution.

[160]  W. Atchley,et al.  A natural classification of the basic helix-loop-helix class of transcription factors. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[161]  Stephen K. Burley,et al.  Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain , 1993, Nature.