Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
暂无分享,去创建一个
Philipp C. Münch | D. Huson | A. Mchardy | B. Stecher | K. McCoy | A. Macpherson | R. Pukall | D. Berry | Hans-Joachim Ruscheweyh | T. Clavel | B. Bunk | D. Garzetti | Simone Herp | Markus Beutler | Sandrine Brugiroux | Manuel Diehl | Diana Ring | A. Loy | Saib Hussain | Carina Pfann | Yvonne Lötscher
[1] Jan P. Meier-Kolthoff,et al. The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota , 2016, Nature Microbiology.
[2] B. Stecher,et al. The mouse gut microbiome revisited: From complex diversity to model ecosystems. , 2016, International journal of medical microbiology : IJMM.
[3] C. Lebrilla,et al. Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella. , 2016, Cell host & microbe.
[4] T. R. Licht,et al. A catalog of the mouse gut metagenome , 2015, Nature Biotechnology.
[5] Jens V. Stein,et al. The outer mucus layer hosts a distinct intestinal microbial niche , 2015, Nature Communications.
[6] J. Fox,et al. The Altered Schaedler Flora: Continued Applications of a Defined Murine Microbial Community. , 2015, ILAR journal.
[7] P. Rosenstiel,et al. Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice , 2014, Proceedings of the National Academy of Sciences of the United States of America.
[8] D. Ward,et al. Draft Genome Sequences of the Altered Schaedler Flora, a Defined Bacterial Community from Gnotobiotic Mice , 2014, Genome Announcements.
[9] A. Bäumler,et al. Comparative Analysis of Salmonella Genomes Identifies a Metabolic Network for Escalating Growth in the Inflamed Gut , 2014, mBio.
[10] M. Robinson,et al. Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem. , 2013, Cell host & microbe.
[11] Susumu Goto,et al. Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..
[12] B. Weimer,et al. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens , 2013, Nature.
[13] B. Stecher,et al. Colonization resistance and microbial ecophysiology: using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle. , 2013, FEMS microbiology reviews.
[14] R. Edwards,et al. Probiotic bacteria reduce salmonella typhimurium intestinal colonization by competing for iron. , 2013, Cell host & microbe.
[15] S. Winter,et al. Streptomycin-Induced Inflammation Enhances Escherichia coli Gut Colonization Through Nitrate Respiration , 2013, mBio.
[16] Alexey A. Gurevich,et al. QUAST: quality assessment tool for genome assemblies , 2013, Bioinform..
[17] Jun Wang,et al. The role of biogeography in shaping diversity of the intestinal microbiota in house mice , 2013, Molecular ecology.
[18] L. Ursell,et al. Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor , 2013, Science.
[19] F. Raymond,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Ray Meta: scalable de novo metagenome assembly and profiling , 2012 .
[20] Pelin Yilmaz,et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..
[21] Edward C. Uberbacher,et al. Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..
[22] E. Pamer,et al. Antibiotics, microbiota, and immune defense. , 2012, Trends in immunology.
[23] B. Birren,et al. The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing , 2012, PloS one.
[24] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[25] David A. Relman,et al. Gut Immune Maturation Depends on Colonization with a Host-Specific Microbiota , 2012, Cell.
[26] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[27] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[28] J. Chun,et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. , 2012, International journal of systematic and evolutionary microbiology.
[29] A. K. Hansen,et al. Time to include the gut microbiota in the hygienic standardisation of laboratory rodents. , 2012, Comparative immunology, microbiology and infectious diseases.
[30] B. Stecher,et al. The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen’s virulence factors, and the host’s mucosal immune response , 2012, Immunological reviews.
[31] K. Berer,et al. Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination , 2011, Nature.
[32] Yongan Zhao,et al. RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data , 2011, Bioinform..
[33] S. Pukatzki,et al. The Vibrio cholerae type VI secretion system displays antimicrobial properties , 2010, Proceedings of the National Academy of Sciences.
[34] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[35] C. von Mering,et al. Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria , 2010, PLoS pathogens.
[36] V. Beneš,et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. , 2009, Clinical chemistry.
[37] G. Dougan,et al. Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota , 2007, PLoS biology.
[38] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[39] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[40] S. Akira,et al. The Salmonella Pathogenicity Island (SPI)-2 and SPI-1 Type III Secretion Systems Allow Salmonella Serovar typhimurium to Trigger Colitis via MyD88-Dependent and MyD88-Independent Mechanisms1 , 2005, The Journal of Immunology.
[41] W. D. de Vos,et al. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. , 2004, International journal of systematic and evolutionary microbiology.
[42] B. Stecher,et al. Flagella and Chemotaxis Are Required for Efficient Induction of Salmonella enterica Serovar Typhimurium Colitis in Streptomycin-Pretreated Mice , 2004, Infection and Immunity.
[43] F. Dewhirst,et al. Phylogeny of the Defined Murine Microbiota: Altered Schaedler Flora , 1999, Applied and Environmental Microbiology.
[44] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[45] R. Freter,et al. Mechanisms That Control Bacterial Populations in Continuous-Flow Culture Models of Mouse Large Intestinal Flora , 1983, Infection and immunity.
[46] B. Stocker,et al. Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines , 1981, Nature.
[47] R. Freter,et al. Efficiency of Various Intestinal Bacteria in Assuming Normal Functions of Enteric Flora After Association with Germ-Free Mice , 1970, Infection and immunity.
[48] R. Freter,et al. Isolation of anaerobic bacteria from human gingiva and mouse cecum by means of a simplified glove box procedure. , 1969, Applied microbiology.
[49] D. Haller,et al. Streptococcus danieliae sp. nov., a novel bacterium isolated from the caecum of a mouse , 2012, Archives of Microbiology.