In silico repositioning of approved drugs for rare and neglected diseases.
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Sean Ekins | Joel S. Freundlich | Joel S Freundlich | Matthew D Krasowski | Antony J. Williams | S. Ekins | M. Krasowski | Antony J Williams
[1] S. Ekins. Systems-ADME/Tox: resources and network approaches. , 2006, Journal of pharmacological and toxicological methods.
[2] Martin Hofmann-Apitius,et al. Concept-Based Semi-Automatic Classification of Drugs , 2009, J. Chem. Inf. Model..
[3] Sean Ekins,et al. Novel web-based tools combining chemistry informatics, biology and social networks for drug discovery. , 2009, Drug discovery today.
[4] Jordi Mestres,et al. A chemogenomic approach to drug discovery: focus on cardiovascular diseases. , 2009, Drug discovery today.
[5] Zsolt Zsoldos,et al. LASSO—ligand activity by surface similarity order: a new tool for ligand based virtual screening , 2008, J. Comput. Aided Mol. Des..
[6] S. Haggarty,et al. Chemical-genetic screen identifies riluzole as an enhancer of Wnt/β-catenin signaling in melanoma. , 2010, Chemistry & biology.
[7] Sean Ekins,et al. Pathway mapping tools for analysis of high content data. , 2007, Methods in molecular biology.
[8] Sean Ekins,et al. Molecular Similarity Methods for Predicting Cross-Reactivity With Therapeutic Drug Monitoring Immunoassays , 2009, Therapeutic drug monitoring.
[9] B Testa,et al. In silico pharmacology for drug discovery: applications to targets and beyond , 2007, British journal of pharmacology.
[10] M. Boguski,et al. Repurposing with a Difference , 2009, Science.
[11] D. Pompliano,et al. Drugs for bad bugs: confronting the challenges of antibacterial discovery , 2007, Nature Reviews Drug Discovery.
[12] Jun O. Liu,et al. Digoxin and other cardiac glycosides inhibit HIF-1α synthesis and block tumor growth , 2008, Proceedings of the National Academy of Sciences.
[13] H O Villar,et al. Protein affinity map of chemical space. , 1998, Journal of chromatography. B, Biomedical sciences and applications.
[14] Beth Apsel,et al. Discovery of Trypanocidal Compounds by Whole Cell HTS of Trypanosoma brucei , 2006, Chemical biology & drug design.
[15] Jun O. Liu,et al. A clinical drug library screen identifies astemizole as an antimalarial agent , 2006, Nature chemical biology.
[16] S. R. Uliana,et al. Repurposing for neglected diseases. , 2009, Science.
[17] Bryan L Roth,et al. Screening the receptorome to discover the molecular targets for plant-derived psychoactive compounds: a novel approach for CNS drug discovery. , 2004, Pharmacology & therapeutics.
[18] T. Nikolskaya,et al. Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms , 2006, Xenobiotica; the fate of foreign compounds in biological systems.
[19] S. Ekins,et al. A Systems Biology View of Drug Transporters , 2009 .
[20] Ruili Huang,et al. Identification of known drugs that act as inhibitors of NF-kappaB signaling and their mechanism of action. , 2010, Biochemical pharmacology.
[21] Sean Ekins,et al. Computational models for drug inhibition of the human apical sodium-dependent bile acid transporter. , 2009, Molecular pharmaceutics.
[22] Matthew R. Pocock,et al. An integrated dataset for in silico drug discovery , 2010, J. Integr. Bioinform..
[23] J. Lehár,et al. High-order combination effects and biological robustness , 2008, Molecular systems biology.
[24] Lynn Rasmussen,et al. High-throughput screening for inhibitors of Mycobacterium tuberculosis H37Rv. , 2009, Tuberculosis.
[25] Shayne C. Gad,et al. Drug Discovery Handbook , 1994 .
[26] A. Chiang,et al. Systematic Evaluation of Drug–Disease Relationships to Identify Leads for Novel Drug Uses , 2009, Clinical pharmacology and therapeutics.
[27] Evan Bolton,et al. An overview of the PubChem BioAssay resource , 2009, Nucleic Acids Res..
[28] Amit K Galande,et al. Repurposing FDA-approved drugs to combat drug-resistant Acinetobacter baumannii. , 2010, The Journal of antimicrobial chemotherapy.
[29] Sean Ekins,et al. Novel Inhibitors of Human Organic Cation/Carnitine Transporter (hOCTN2) via Computational Modeling and In Vitro Testing , 2009, Pharmaceutical Research.
[30] Sherry L. Jenkins,et al. Network analysis of FDA approved drugs and their targets. , 2007, The Mount Sinai journal of medicine, New York.
[31] Antony J. Williams,et al. Free online resources enabling crowd-sourced drug discovery , 2009 .
[32] D. C. Miguel,et al. Tamoxifen Is Effective in the Treatment of Leishmania amazonensis Infections in Mice , 2008, PLoS neglected tropical diseases.
[33] Alla Karnovsky,et al. A class of selective antibacterials derived from a protein kinase inhibitor pharmacophore , 2009, Proceedings of the National Academy of Sciences.
[34] Sean Ekins,et al. When pharmaceutical companies publish large datasets: an abundance of riches or fool's gold? , 2010, Drug discovery today.
[35] Sean Ekins,et al. Chemical target and pathway toxicity mechanisms defined in primary human cell systems. , 2010, Journal of pharmacological and toxicological methods.
[36] Sean Ekins,et al. Using molecular similarity to highlight the challenges of routine immunoassay-based drug of abuse/toxicology screening in emergency medicine , 2009, BMC emergency medicine.
[37] A. Bender,et al. Analysis of Pharmacology Data and the Prediction of Adverse Drug Reactions and Off‐Target Effects from Chemical Structure , 2007, ChemMedChem.
[38] Bryan L Roth,et al. Massively parallel screening of the receptorome. , 2008, Combinatorial chemistry & high throughput screening.
[39] L. Kauvar,et al. The diversity challenge in combinatorial chemistry. , 1998, Current opinion in drug discovery & development.
[40] Sean Ekins,et al. Meta-analysis of molecular property patterns and filtering of public datasets of antimalarial “hits” and drugs , 2010 .
[41] Sean Ekins,et al. Identification and Validation of Novel Human Pregnane X Receptor Activators among Prescribed Drugs via Ligand-Based Virtual Screening , 2011, Drug Metabolism and Disposition.
[42] James R. Brown,et al. Thousands of chemical starting points for antimalarial lead identification , 2010, Nature.
[43] Jun O. Liu,et al. Inhibition of angiogenesis by the antifungal drug itraconazole. , 2007, ACS chemical biology.
[44] P. Tebas,et al. Anti-HIV-1 activity of the neurokinin-1 receptor antagonist aprepitant and synergistic interactions with other antiretrovirals , 2010, AIDS.
[45] E. Oldfield. Targeting isoprenoid biosynthesis for drug discovery: bench to bedside. , 2010, Accounts of chemical research.
[46] Sean Ekins,et al. Essential Metabolites of Mycobacterium tuberculosis and Their Mimics , 2011, mBio.
[47] Sean Ekins,et al. Integrated in silico-in vitro strategy for addressing cytochrome P450 3A4 time-dependent inhibition. , 2010, Chemical research in toxicology.
[48] Amanda L. Garner,et al. Repositioning of an existing drug for the neglected tropical disease Onchocerciasis , 2010, Proceedings of the National Academy of Sciences.
[49] Scott A. Peterson,et al. Inhibiting transthyretin conformational changes that lead to amyloid fibril formation. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[50] P. Aloy,et al. Unveiling the role of network and systems biology in drug discovery. , 2010, Trends in pharmacological sciences.
[51] A. Fliri,et al. Analysis of drug-induced effect patterns to link structure and side effects of medicines , 2005, Nature chemical biology.
[52] A. Fliri,et al. Biological spectra analysis: Linking biological activity profiles to molecular structure. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[53] Anang A. Shelat,et al. Chemical genetics of Plasmodium falciparum , 2010, Nature.
[54] D. Cavalla. APT drug R&D: the right active ingredient in the right presentation for the right therapeutic use , 2009, Nature Reviews Drug Discovery.
[55] Lynn Rasmussen,et al. Antituberculosis activity of the molecular libraries screening center network library. , 2009, Tuberculosis.
[56] A. Datti,et al. A repurposing strategy identifies novel synergistic inhibitors of Plasmodium falciparum heat shock protein 90. , 2010, Journal of medicinal chemistry.
[57] Sean Ekins,et al. A Predictive Ligand-Based Bayesian Model for Human Drug-Induced Liver Injury , 2010, Drug Metabolism and Disposition.
[58] Sean Ekins,et al. Pioneering Use of the Cloud for Development of Collaborative Drug Discovery (CDD) Database , 2011 .
[59] R. Mortara,et al. Tamoxifen is effective against Leishmania and induces a rapid alkalinization of parasitophorous vacuoles harbouring Leishmania (Leishmania) amazonensis amastigotes. , 2007, The Journal of antimicrobial chemotherapy.
[60] David M. Rocke,et al. Predicting ligand binding to proteins by affinity fingerprinting. , 1995, Chemistry & biology.
[61] Christopher A. Ross,et al. The antidepressant sertraline improves the phenotype, promotes neurogenesis and increases BDNF levels in the R6/2 Huntington's disease mouse model , 2008, Experimental Neurology.
[62] Philip E. Bourne,et al. Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis , 2009, PLoS Comput. Biol..
[63] S. Ekins. Drug Transporter Pharmacophores , 2009 .
[64] M. Milik,et al. Mapping adverse drug reactions in chemical space. , 2009, Journal of medicinal chemistry.
[65] M. Fischbach,et al. Repurposing libraries of eukaryotic protein kinase inhibitors for antibiotic discovery , 2009, Proceedings of the National Academy of Sciences.
[66] A. Barabasi,et al. Drug—target network , 2007, Nature Biotechnology.
[67] T. Nikolskaya,et al. A COMBINED APPROACH TO DRUG METABOLISM AND TOXICITY ASSESSMENT , 2006, Drug Metabolism and Disposition.
[68] G. Brewer. Drug development for orphan diseases in the context of personalized medicine. , 2009, Translational research : the journal of laboratory and clinical medicine.
[69] A. Fliri,et al. Biospectra analysis: model proteome characterizations for linking molecular structure and biological response. , 2005, Journal of medicinal chemistry.
[70] Sean Ekins,et al. Systems Approaches for Pharmaceutical Research and Development , 2006 .
[71] Ryan T. Strachan,et al. Screening the receptorome: an efficient approach for drug discovery and target validation. , 2006, Drug discovery today.
[72] Jun O. Liu,et al. Identification of type 1 inosine monophosphate dehydrogenase as an antiangiogenic drug target. , 2006, Journal of medicinal chemistry.
[73] Peter A Merkel,et al. Clinical research for rare disease: opportunities, challenges, and solutions. , 2009, Molecular genetics and metabolism.
[74] G. V. Paolini,et al. Global mapping of pharmacological space , 2006, Nature Biotechnology.
[75] Sean Ekins,et al. Computational Approaches That Predict Metabolic Intermediate Complex Formation with CYP3A4 (+b5) , 2007, Drug Metabolism and Disposition.
[76] P. Tebas,et al. Neurokinin-1 Receptor Antagonist (Aprepitant) Inhibits Drug-Resistant HIV-1 Infection of Macrophages in vitro , 2007, Journal of Neuroimmune Pharmacology.
[77] Martin G. Pomper,et al. Identification of inhibitors of ABCG2 by a bioluminescence imaging-based high-throughput assay. , 2009, Cancer research.
[78] Jin Namkoong,et al. Metabotropic glutamate receptor 1 and glutamate signaling in human melanoma. , 2007, Cancer research.
[79] Philip E. Bourne,et al. PROMISCUOUS: a database for network-based drug-repositioning , 2010, Nucleic Acids Res..
[80] Jianghong An,et al. A large-scale computational approach to drug repositioning. , 2006, Genome informatics. International Conference on Genome Informatics.
[81] Bryan L. Roth,et al. Finding New Tricks For Old Drugs: An Efficient Route For Public-Sector Drug Discovery , 2005, Nature Reviews Drug Discovery.
[82] Michael J. Keiser,et al. Relating protein pharmacology by ligand chemistry , 2007, Nature Biotechnology.
[83] Sean Ekins,et al. In Vitro and Pharmacophore-Based Discovery of Novel hPEPT1 Inhibitors , 2005, Pharmaceutical Research.
[84] Joel S. Freundlich,et al. Computational databases, pathway and cheminformatics tools for tuberculosis drug discovery. , 2011, Trends in Microbiology.
[85] C. Chong,et al. Efficacy of Pyrvinium Pamoate against Cryptosporidium parvum Infection In Vitro and in a Neonatal Mouse Model , 2008, Antimicrobial Agents and Chemotherapy.
[86] A. Bender,et al. Modeling Promiscuity Based on in vitro Safety Pharmacology Profiling Data , 2007, ChemMedChem.
[87] P. Hajduk,et al. Rational approaches to targeted polypharmacology: creating and navigating protein-ligand interaction networks. , 2010, Current opinion in chemical biology.
[88] D. Raible,et al. Identification of FDA-Approved Drugs and Bioactives that Protect Hair Cells in the Zebrafish (Danio rerio) Lateral Line and Mouse (Mus musculus) Utricle , 2009, Journal of the Association for Research in Otolaryngology.
[89] C Helma,et al. Prediction of Adverse Drug Reactions Using Decision Tree Modeling , 2010, Clinical pharmacology and therapeutics.
[90] C. Ross,et al. Tiagabine is neuroprotective in the N171-82Q and R6/2 mouse models of Huntington's disease , 2008, Neurobiology of Disease.
[91] Christopher T. Walsh,et al. Antibiotics for Emerging Pathogens , 2009, Science.
[92] Pedro M Alzari,et al. Rising standards for tuberculosis drug development. , 2008, Trends in pharmacological sciences.
[93] David A. Fidock,et al. Drug discovery: Priming the antimalarial pipeline , 2010, Nature.
[94] Philip Prathipati,et al. Global Bayesian Models for the Prioritization of Antitubercular Agents , 2008, J. Chem. Inf. Model..
[95] D. Tweardy,et al. Substance P Receptor Antagonism for Treatment of Cryptosporidiosis in Immunosuppressed Mice , 2008, The Journal of parasitology.
[96] Praveen M. Bahadduri,et al. Rapid Identification of P-glycoprotein Substrates and Inhibitors , 2006, Drug Metabolism and Disposition.
[97] S. Ekins,et al. In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling , 2007, British journal of pharmacology.
[98] Harold J. Ting,et al. Glybenclamide: an antidiabetic with in vivo antithrombotic activity. , 2010, European journal of pharmacology.
[99] Ram Samudrala,et al. Novel paradigms for drug discovery: computational multitarget screening. , 2008, Trends in pharmacological sciences.
[100] R. Buxton,et al. New anti-tuberculosis agents amongst known drugs. , 2009, Tuberculosis.
[101] Sean Ekins,et al. Chemoinformatic methods for predicting interference in drug of abuse/toxicology immunoassays. , 2009, Clinical chemistry.
[102] Bin Chen,et al. Gaining Insight into Off-Target Mediated Effects of Drug Candidates with a Comprehensive Systems Chemical Biology Analysis , 2009, J. Chem. Inf. Model..
[103] Jun O. Liu,et al. Effect of nitroxoline on angiogenesis and growth of human bladder cancer. , 2010, Journal of the National Cancer Institute.
[104] Steven A. Haist,et al. Clinician's pocket drug reference , 2004 .
[105] Antony J Williams,et al. Internet-based tools for communication and collaboration in chemistry. , 2008, Drug discovery today.
[106] Sean Ekins,et al. Precompetitive preclinical ADME/Tox data: set it free on the web to facilitate computational model building and assist drug development. , 2010, Lab on a chip.
[107] Sean Ekins,et al. Computer Applications in Pharmaceutical Research and Development , 2008 .
[108] Sean Ekins,et al. Quantitative structure activity relationship for inhibition of human organic cation/carnitine transporter. , 2010, Molecular pharmaceutics.
[109] Michael J. Keiser,et al. Predicting new molecular targets for known drugs , 2009, Nature.
[110] C. Chong,et al. New uses for old drugs , 2007, Nature.
[111] Sean Ekins,et al. A collaborative database and computational models for tuberculosis drug discovery. , 2010, Molecular bioSystems.
[112] T. Ashburn,et al. Drug repositioning: identifying and developing new uses for existing drugs , 2004, Nature Reviews Drug Discovery.
[113] V. Poroikov,et al. Robustness of Biological Activity Spectra Predicting by Computer Program PASS for Noncongeneric Sets of Chemical Compounds , 2000, Journal of chemical information and computer sciences.
[114] T. Nikolskaya,et al. Systems Biology: Applications in Drug Discovery , 2010 .
[115] S. Friend,et al. A network view of disease and compound screening , 2009, Nature Reviews Drug Discovery.
[116] L. D. de Carvalho,et al. Nitazoxanide kills replicating and nonreplicating Mycobacterium tuberculosis and evades resistance. , 2009, Journal of medicinal chemistry.
[117] Sean Ekins,et al. Challenges Predicting Ligand-Receptor Interactions of Promiscuous Proteins: The Nuclear Receptor PXR , 2009, PLoS Comput. Biol..
[118] D. Chattopadhyay,et al. Lipophilic Antifolate Trimetrexate Is a Potent Inhibitor of Trypanosoma cruzi: Prospect for Chemotherapy of Chagas' Disease , 2005, Antimicrobial Agents and Chemotherapy.
[119] Sean Ekins,et al. Analysis and hit filtering of a very large library of compounds screened against Mycobacterium tuberculosis. , 2010, Molecular bioSystems.
[120] J. Lehár,et al. Systematic discovery of multicomponent therapeutics , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[121] Sean Ekins,et al. A novel method for generation of signature networks as biomarkers from complex high throughput data. , 2005, Toxicology letters.
[122] S. Ekins. Predicting undesirable drug interactions with promiscuous proteins in silico. , 2004, Drug discovery today.
[123] David S. Wishart,et al. DrugBank: a knowledgebase for drugs, drug actions and drug targets , 2007, Nucleic Acids Res..
[124] G. Ecker,et al. Transporters as drug carriers : structure, function, substrates , 2009 .
[125] Sean Ekins,et al. Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity. , 2005, Trends in pharmacological sciences.
[126] Sean Ekins,et al. The importance of discerning shape in molecular pharmacology. , 2009, Trends in pharmacological sciences.
[127] R Abagyan,et al. Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs , 2007, Proceedings of the National Academy of Sciences.
[128] Dragos Horvath,et al. Predicting ADME properties and side effects: the BioPrint approach. , 2003, Current opinion in drug discovery & development.
[129] Min-Seok Kwon,et al. IDMap: facilitating the detection of potential leads with therapeutic targets , 2008, Bioinform..