Identifying candidate positive selection genes in Korean imported pig breeds

[1]  J. Flowers,et al.  Origins and geographic diversification of African rice (Oryza glaberrima) , 2018, bioRxiv.

[2]  Lusheng Huang,et al.  Genome-wide association studies for fatty acid metabolic traits in five divergent pig populations , 2016, Scientific Reports.

[3]  J. Yang,et al.  Genome-wide mapping of copy number variations in commercial hybrid pigs using a high-density SNP genotyping array , 2016, Russian Journal of Genetics.

[4]  Y. Phasuk,et al.  MC1R, KIT, IGF2, and NR6A1 as markers for genetic differentiation in Thai native, wild boars, and Duroc and Chinese Meishan pigs. , 2015, Genetics and molecular research : GMR.

[5]  Namshin Kim,et al.  Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds , 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.

[6]  L. Lefaucheur,et al.  Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle. , 2015, Journal of animal science.

[7]  R. Nielsen,et al.  A genome-wide scan for signatures of directional selection in domesticated pigs , 2015, BMC Genomics.

[8]  G. Galimberti,et al.  A candidate gene association study for nine economically important traits in Italian Holstein cattle. , 2014, Animal genetics.

[9]  S. Renaud,et al.  Adaptive mechanisms controlling uterine spiral artery remodeling during the establishment of pregnancy. , 2014, The International journal of developmental biology.

[10]  Heebal Kim,et al.  Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production , 2014, Genome biology and evolution.

[11]  Tae-Ho Lee,et al.  SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data , 2014, BMC Genomics.

[12]  Y. Zhang,et al.  Role of IGF2BP3 in trophoblast cell invasion and migration , 2014, Cell Death and Disease.

[13]  P. Zambonelli,et al.  SNPs detection in DHPS-WDR83 overlapping genes mapping on porcine chromosome 2 in a QTL region for meat pH , 2013, BMC Genetics.

[14]  M. Matzuk,et al.  BMPR2 is required for postimplantation uterine function and pregnancy maintenance. , 2013, The Journal of clinical investigation.

[15]  D. I. Våge,et al.  A missense mutation in growth differentiation factor 9 (GDF9) is strongly associated with litter size in sheep , 2013, BMC Genetics.

[16]  A. M. Barrio,et al.  Strong signatures of selection in the domestic pig genome , 2012, Proceedings of the National Academy of Sciences.

[17]  S. Gammie,et al.  Gene Expression Changes in the Septum: Possible Implications for MicroRNAs in Sculpting the Maternal Brain , 2012, PloS one.

[18]  W. Cheng,et al.  Role of corin in trophoblast invasion and uterine spiral artery remodelling in pregnancy , 2012, Nature.

[19]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[20]  M. Groenen,et al.  Signatures of Selection in the Genomes of Commercial and Non-Commercial Chicken Breeds , 2012, PloS one.

[21]  M F Rothschild,et al.  A whole-genome association study for pig reproductive traits. , 2012, Animal genetics.

[22]  I. Georgiou,et al.  Association of paraoxonase gene polymorphisms with sperm parameters. , 2011, Journal of andrology.

[23]  Gonçalo R. Abecasis,et al.  The variant call format and VCFtools , 2011, Bioinform..

[24]  P. Visscher,et al.  GCTA: a tool for genome-wide complex trait analysis. , 2011, American journal of human genetics.

[25]  S. Smith,et al.  Differential expression of angiotensin II type 1 and type 2 receptors at the maternal-fetal interface: potential roles in early placental development. , 2010, Reproduction.

[26]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[27]  J. Joven,et al.  Paraoxonase-1 in female infertility: a possible role against oxidative stress-induced inflammation. , 2010, Fertility and sterility.

[28]  D. Cyr,et al.  Assessing the Role of Claudins in Maintaining the Integrity of Epididymal Tight Junctions Using Novel Human Epididymal Cell Lines1 , 2010, Biology of reproduction.

[29]  C. Porto,et al.  Estrogen receptors and function in the male reproductive system. , 2009, Arquivos brasileiros de endocrinologia e metabologia.

[30]  M. Stephens,et al.  Inferring weak population structure with the assistance of sample group information , 2009, Molecular ecology resources.

[31]  K. Holsinger,et al.  Genetics in geographically structured populations: defining, estimating and interpreting FST , 2009, Nature Reviews Genetics.

[32]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[33]  Pornpimol Charoentong,et al.  ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks , 2009, Bioinform..

[34]  A. Bonnet,et al.  In vivo gene expression in granulosa cells during pig terminal follicular development. , 2008, Reproduction.

[35]  J. Vallet,et al.  Differences in placental structure during gestation associated with large and small pig fetuses. , 2007, Journal of animal science.

[36]  B. Browning,et al.  Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.

[37]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[38]  L. S. Sleer,et al.  Cell-Type Localization of Platelet-Derived Growth Factors and Receptors in the Postnatal Rat Ovary and Follicle1 , 2007, Biology of reproduction.

[39]  L. S. Sleer,et al.  Platelet-Derived Growth Factors and Receptors in the Rat Corpus Luteum: Localization and Identification of an Effect on Luteogenesis1 , 2007, Biology of reproduction.

[40]  T. Kunej,et al.  Association between the apolipoprotein B signal peptide gene insertion/deletion polymorphism and male infertility. , 2006, Molecular human reproduction.

[41]  E. Chien,et al.  Phospholipid Scramblase Isoform Expression in Pregnant Rat Uterus , 2006, The Journal of the Society for Gynecologic Investigation: JSGI.

[42]  M. Phillippe,et al.  SHP Protein Tyrosine Phosphatase Expression in Rat Uterine Tissue , 2006, The Journal of the Society for Gynecologic Investigation: JSGI.

[43]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[44]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[45]  V. Darras,et al.  Identification of somatostatin receptors controlling growth hormone and thyrotropin secretion in the chicken using receptor subtype-specific agonists. , 2003, The Journal of endocrinology.

[46]  K. Kim,et al.  Assessment of genetic diversity of Korean native pig (Sus scrofa) using AFLP markers. , 2002, Genes & genetic systems.

[47]  M. Vidaud,et al.  Characterization of Human Villous and Extravillous Trophoblasts Isolated from First Trimester Placenta , 2001, Laboratory Investigation.

[48]  E. Giuffra,et al.  The origin of the domestic pig: independent domestication and subsequent introgression. , 2000, Genetics.

[49]  B. Campbell,et al.  Follicle selection in sheep with breed differences in ovulation rate , 1998, Molecular and Cellular Endocrinology.

[50]  E. Noordhuizen-Stassen,et al.  Undesirable side effects of selection for high production efficiency in farm animals: a review , 1998 .

[51]  E. Rubin,et al.  A novel functional role for apolipoprotein B in male infertility in heterozygous apolipoprotein B knockout mice. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Y. Akimoto,et al.  Angiotensin II induces ovulation and oocyte maturation in rabbit ovaries via the AT2 receptor subtype. , 1996, Endocrinology.

[53]  D. McLaren,et al.  Genetic influences on reproductive performance. , 1992, The Veterinary clinics of North America. Food animal practice.

[54]  B. Weir,et al.  ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.

[55]  R. Knox.  Impact of swine reproductive technologies on pig and global food production. , 2014, Advances in experimental medicine and biology.

[56]  P. Gonçalves,et al.  Role of angiotensin in ovarian follicular development and ovulation in mammals: a review of recent advances. , 2012, Reproduction.

[57]  C. Haley,et al.  Genetic basis of prolificacy in Meishan pigs. , 1993, Journal of reproduction and fertility. Supplement.

[58]  A. Bordas,et al.  Divergent selection for residual feed intake in laying hens: effects on growth and fatness , 1988 .