A GC-centered view of 3D genome organization.
暂无分享,去创建一个
[1] Qianyu Zhao,et al. A sustainable mouse karyotype created by programmed chromosome fusion , 2022, Science.
[2] G. Kops,et al. Nuclear chromosome locations dictate segregation error frequencies , 2022, Nature.
[3] Erez Lieberman Aiden,et al. Gene architecture directs splicing outcome in separate nuclear spatial regions. , 2022, Molecular cell.
[4] Anisha Shakya,et al. Phase Separation of DNA: From Past to Present. , 2021, Biophysical journal.
[5] Kyle N. Klein,et al. Replication timing maintains the global epigenetic state in human cells , 2019, bioRxiv.
[6] D. Higgs,et al. The relationship between genome structure and function , 2020, Nature Reviews Genetics.
[7] H. Golczyk,et al. Pericentromere clustering in Tradescantia section Rhoeo involves self-associations of AT- and GC-rich heterochromatin fractions, is developmentally regulated, and increases during differentiation , 2020, Chromosoma.
[8] Erik L. G. Wernersson,et al. GPSeq reveals the radial organization of chromatin in the cell nucleus , 2020, Nature Biotechnology.
[9] N. Crosetto,et al. Radial Organization in the Mammalian Nucleus , 2020, Frontiers in Genetics.
[10] T. Wiehe,et al. DNA sequence-dependent chromatin architecture and nuclear hubs formation , 2019, Scientific Reports.
[11] L. Mirny,et al. Heterochromatin drives compartmentalization of inverted and conventional nuclei , 2019, Nature.
[12] Giacomo Cavalli,et al. Principles of genome folding into topologically associating domains , 2019, Science Advances.
[13] L. Vitale,et al. On the length, weight and GC content of the human genome , 2019, BMC research notes.
[14] Anisha Shakya,et al. DNA Local-Flexibility-Dependent Assembly of Phase-Separated Liquid Droplets , 2018, Biophysical journal.
[15] X. Xie,et al. Three-dimensional genome structures of single diploid human cells , 2018, Science.
[16] Jian Ma,et al. Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler , 2018, The Journal of cell biology.
[17] Y. Gao,et al. Structural Modeling of Chromatin Integrates Genome Features and Reveals Chromosome Folding Principle , 2017, bioRxiv.
[18] Andre J. Faure,et al. 3D structure of individual mammalian genomes studied by single cell Hi-C , 2017, Nature.
[19] Jonas Paulsen,et al. Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts , 2017, Genome Biology.
[20] M. Zacharias,et al. Free energy analysis and mechanism of base pair stacking in nicked DNA , 2016, Nucleic acids research.
[21] G. Shivashankar,et al. Chromosome intermingling—the physical basis of chromosome organization in differentiated cells , 2016, Nucleic acids research.
[22] Siddharth S. Dey,et al. Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells , 2015, Cell.
[23] R. Rohs,et al. A widespread role of the motif environment in transcription factor binding across diverse protein families , 2015, Genome research.
[24] Neva C. Durand,et al. A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping , 2014, Cell.
[25] Robert S. Illingworth,et al. Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells , 2014, Science.
[26] F. Grosveld,et al. Transcription in the context of the 3D nucleus. , 2014, Current opinion in genetics & development.
[27] D. Du,et al. Variation, Evolution, and Correlation Analysis of C+G Content and Genome or Chromosome Size in Different Kingdoms and Phyla , 2014, PloS one.
[28] Bas van Steensel,et al. Genome Architecture: Domain Organization of Interphase Chromosomes , 2013, Cell.
[29] Matthew J. Rodesch,et al. Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis , 2011, Chromosome Research.
[30] Alexander Vologodskii,et al. Sequence dependence of DNA bending rigidity , 2010, Proceedings of the National Academy of Sciences.
[31] P. Flicek,et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. , 2010, Molecular cell.
[32] Thomas Cremer,et al. 4D chromatin dynamics in cycling cells: Theodor Boveri's hypotheses revisited. , 2010, Nucleus.
[33] T. Cremer,et al. Chromosome territories. , 2010, Cold Spring Harbor perspectives in biology.
[34] D. Marenduzzo,et al. Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes , 2010, Chromosome Research.
[35] S. Kozubek,et al. H3K9 acetylation and radial chromatin positioning , 2009, Journal of cellular physiology.
[36] M. Plohl,et al. A GC-rich satellite DNA and karyology of the bivalve mollusk Donax trunculus: a dominance of GC-rich heterochromatin , 2009, Cytogenetic and Genome Research.
[37] S. Dietzel,et al. Three-dimensional positioning of genes in mouse cell nuclei , 2008, Chromosoma.
[38] L. Wessels,et al. Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions , 2008, Nature.
[39] Thomas Cremer,et al. Replication-timing-correlated spatial chromatin arrangements in cancer and in primate interphase nuclei , 2008, Journal of Cell Science.
[40] Elizabeth Kerr,et al. Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells , 2008, PLoS genetics.
[41] Gerhard Wanner,et al. CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley , 2007, Chromosoma.
[42] Y. Mo. Probing the nature of hydrogen bonds in DNA base pairs , 2006, Journal of molecular modeling.
[43] A. Pombo,et al. Intermingling of Chromosome Territories in Interphase Suggests Role in Translocations and Transcription-Dependent Associations , 2006, PLoS biology.
[44] Anne E Carpenter,et al. Long-Range Directional Movement of an Interphase Chromosome Site , 2006, Current Biology.
[45] Giorgio Bernardi,et al. Gene-rich and gene-poor chromosomal regions have different locations in the interphase nuclei of cold-blooded vertebrates , 2006, Chromosoma.
[46] Thomas Cremer,et al. Common themes and cell type specific variations of higher order chromatin arrangements in the mouse , 2005, BMC Cell Biology.
[47] R. Eils,et al. Three-Dimensional Maps of All Chromosomes in Human Male Fibroblast Nuclei and Prometaphase Rosettes , 2005, PLoS biology.
[48] I. Kuznetsova,et al. New types of mouse centromeric satellite DNAs , 2005, Chromosome Research.
[49] M. Frank-Kamenetskii,et al. Stacked-unstacked equilibrium at the nick site of DNA. , 2004, Journal of molecular biology.
[50] Tom Misteli,et al. Tissue-specific spatial organization of genomes , 2004, Genome Biology.
[51] C Cremer,et al. Radial arrangement of chromosome territories in human cell nuclei: a computer model approach based on gene density indicates a probabilistic global positioning code. , 2004, Biophysical journal.
[52] T. Cremer,et al. Two-color fluorescence labeling of early and mid-to-late replicating chromatin in living cells , 2004, Chromosome Research.
[53] Thomas Cremer,et al. Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells , 2004, Chromosome Research.
[54] T. Cremer,et al. Three-dimensional arrangements of centromeres and telomeres in nuclei of human and murine lymphocytes , 2004, Chromosome Research.
[55] H. Bussemaker,et al. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. , 2003, Genome research.
[56] Giorgio Bernardi,et al. Localization of the gene-richest and the gene-poorest isochores in the interphase nuclei of mammals and birds. , 2002, Gene.
[57] T. Cremer,et al. Evolutionary conservation of chromosome territory arrangements in cell nuclei from higher primates , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[58] Juliet A. Ellis,et al. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells. , 2001, Human molecular genetics.
[59] H. Yokota,et al. Size-dependent positioning of human chromosomes in interphase nuclei. , 2000, Biophysical journal.
[60] R. Dilão,et al. Spatial associations of centromeres in the nuclei of hematopoietic cells: evidence for cell-type-specific organizational patterns. , 2000, Blood.
[61] W. Bickmore,et al. Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts , 2000, Current Biology.
[62] Peter Teague,et al. Differences in the Localization and Morphology of Chromosomes in the Human Nucleus , 1999, The Journal of cell biology.
[63] A. Bednarek,et al. Bovine 1.709 satellite. Recombination hotspots and dispersed repeated sequences. , 1984, Journal of molecular biology.