ICA model order selection of task co-activation networks

Independent component analysis (ICA) has become a widely used method for extracting functional networks in the brain during rest and task. Historically, preferred ICA dimensionality has widely varied within the neuroimaging community, but typically varies between 20 and 100 components. This can be problematic when comparing results across multiple studies because of the impact ICA dimensionality has on the topology of its resultant components. Recent studies have demonstrated that ICA can be applied to peak activation coordinates archived in a large neuroimaging database (i.e., BrainMap Database) to yield whole-brain task-based co-activation networks. A strength of applying ICA to BrainMap data is that the vast amount of metadata in BrainMap can be used to quantitatively assess tasks and cognitive processes contributing to each component. In this study, we investigated the effect of model order on the distribution of functional properties across networks as a method for identifying the most informative decompositions of BrainMap-based ICA components. Our findings suggest dimensionality of 20 for low model order ICA to examine large-scale brain networks, and dimensionality of 70 to provide insight into how large-scale networks fractionate into sub-networks. We also provide a functional and organizational assessment of visual, motor, emotion, and interoceptive task co-activation networks as they fractionate from low to high model-orders.

[1]  Tülay Adali,et al.  Estimating the number of independent components for functional magnetic resonance imaging data , 2007, Human brain mapping.

[2]  B. Biswal,et al.  Functional connectivity in the motor cortex of resting human brain using echo‐planar mri , 1995, Magnetic resonance in medicine.

[3]  Alan C. Evans,et al.  Uncovering Intrinsic Modular Organization of Spontaneous Brain Activity in Humans , 2009, PloS one.

[4]  R. Sokal,et al.  THE COMPARISON OF DENDROGRAMS BY OBJECTIVE METHODS , 1962 .

[5]  Timothy Edward John Behrens,et al.  Anatomical and Functional Connectivity of Cytoarchitectonic Areas within the Human Parietal Operculum , 2010, The Journal of Neuroscience.

[6]  V. Calhoun,et al.  Modulation of temporally coherent brain networks estimated using ICA at rest and during cognitive tasks , 2008, Human brain mapping.

[7]  O. Tervonen,et al.  The effect of model order selection in group PICA , 2010, Human brain mapping.

[8]  Jessica A. Turner,et al.  ALE Meta-Analysis Workflows Via the Brainmap Database: Progress Towards A Probabilistic Functional Brain Atlas , 2009, Front. Neuroinform..

[9]  Wei Liao,et al.  Topological Fractionation of Resting-State Networks , 2011, PloS one.

[10]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[11]  Stephen M Smith,et al.  Correspondence of the brain's functional architecture during activation and rest , 2009, Proceedings of the National Academy of Sciences.

[12]  Katja Kollewe,et al.  Changes of resting state brain networks in amyotrophic lateral sclerosis , 2009, Experimental Neurology.

[13]  Jessica A. Turner,et al.  Behavioral Interpretations of Intrinsic Connectivity Networks , 2011, Journal of Cognitive Neuroscience.

[14]  B. Biswal,et al.  Blind source separation of multiple signal sources of fMRI data sets using independent component analysis. , 1999, Journal of computer assisted tomography.

[15]  Vince D. Calhoun,et al.  A method for functional network connectivity among spatially independent resting-state components in schizophrenia , 2008, NeuroImage.

[16]  E. Oja,et al.  Independent Component Analysis , 2013 .

[17]  Erkki Oja,et al.  Independent component analysis: algorithms and applications , 2000, Neural Networks.

[18]  Angela R. Laird,et al.  Automated regional behavioral analysis for human brain images , 2012, Front. Neuroinform..

[19]  K. Zilles,et al.  An investigation of the structural, connectional, and functional subspecialization in the human amygdala , 2012, Human brain mapping.

[20]  S. Rombouts,et al.  Consistent resting-state networks across healthy subjects , 2006, Proceedings of the National Academy of Sciences.

[21]  P. Fox,et al.  Metaanalytic connectivity modeling: Delineating the functional connectivity of the human amygdala , 2009, Human brain mapping.

[22]  T. Paus,et al.  Functional coactivation map of the human brain. , 2008, Cerebral cortex.

[23]  V. Calhoun,et al.  Selective changes of resting-state networks in individuals at risk for Alzheimer's disease , 2007, Proceedings of the National Academy of Sciences.

[24]  Eswar Damaraju,et al.  Tracking whole-brain connectivity dynamics in the resting state. , 2014, Cerebral cortex.

[25]  Stephen M. Smith,et al.  Probabilistic independent component analysis for functional magnetic resonance imaging , 2004, IEEE Transactions on Medical Imaging.

[26]  Paul M. Thompson,et al.  An Optimized Individual Target Brain in the Talairach Coordinate System , 2002, NeuroImage.

[27]  Vince D. Calhoun,et al.  Decomposing the brain: components and modes, networks and nodes , 2012, Trends in Cognitive Sciences.

[28]  Angela R. Laird,et al.  Co-activation patterns distinguish cortical modules, their connectivity and functional differentiation , 2011, NeuroImage.

[29]  Russell A. Poldrack,et al.  Large-scale automated synthesis of human functional neuroimaging data , 2011, Nature Methods.

[30]  Vince D. Calhoun,et al.  The spatiospectral characterization of brain networks: Fusing concurrent EEG spectra and fMRI maps , 2013, NeuroImage.

[31]  Susan Spear Bassett,et al.  Analysis of Group ICA-Based Connectivity Measures from fMRI: Application to Alzheimer's Disease , 2012, PloS one.

[32]  Russell A. Poldrack,et al.  Discovering Relations Between Mind, Brain, and Mental Disorders Using Topic Mapping , 2012, PLoS Comput. Biol..

[33]  Kimberly L. Ray,et al.  Meta-analytic connectivity modeling reveals differential functional connectivity of the medial and lateral orbitofrontal cortex. , 2014, Cerebral cortex.

[34]  Li Yao,et al.  Impairment and compensation coexist in amnestic MCI default mode network , 2010, NeuroImage.

[35]  Danilo Bzdok,et al.  The BrainMap strategy for standardization, sharing, and meta-analysis of neuroimaging data , 2011, BMC Research Notes.

[36]  M. Greicius,et al.  Default-mode network activity distinguishes Alzheimer's disease from healthy aging: Evidence from functional MRI , 2004, Proc. Natl. Acad. Sci. USA.

[37]  G. Glover,et al.  Resting-State Functional Connectivity in Major Depression: Abnormally Increased Contributions from Subgenual Cingulate Cortex and Thalamus , 2007, Biological Psychiatry.

[38]  W. Liao,et al.  Impaired attention network in temporal lobe epilepsy: A resting FMRI study , 2009, Neuroscience Letters.

[39]  David T. Jones,et al.  Non-Stationarity in the “Resting Brain’s” Modular Architecture , 2012, PloS one.

[40]  Christian Windischberger,et al.  Toward discovery science of human brain function , 2010, Proceedings of the National Academy of Sciences.

[41]  Lars T. Westlye,et al.  Network-specific effects of age and in-scanner subject motion: A resting-state fMRI study of 238 healthy adults , 2012, NeuroImage.

[42]  O. Tervonen,et al.  Neuroglial Plasticity at Striatal Glutamatergic Synapses in Parkinson's Disease , 2011, Front. Syst. Neurosci..

[43]  W. K. Simmons,et al.  Circular analysis in systems neuroscience: the dangers of double dipping , 2009, Nature Neuroscience.

[44]  V. Calhoun,et al.  Multisubject Independent Component Analysis of fMRI: A Decade of Intrinsic Networks, Default Mode, and Neurodiagnostic Discovery , 2012, IEEE Reviews in Biomedical Engineering.

[45]  Li Yao,et al.  Improved application of independent component analysis to functional magnetic resonance imaging study via linear projection techniques , 2009, Human brain mapping.

[46]  Edward T. Bullmore,et al.  Neuroinformatics Original Research Article , 2022 .

[47]  Mark W. Woolrich,et al.  Bayesian analysis of neuroimaging data in FSL , 2009, NeuroImage.

[48]  C. Schönfeldt-Lecuona,et al.  Aberrant connectivity of lateral prefrontal networks in presymptomatic Huntington's disease , 2008, Experimental Neurology.

[49]  Aapo Hyvärinen,et al.  Validating the independent components of neuroimaging time series via clustering and visualization , 2004, NeuroImage.

[50]  Rex E. Jung,et al.  A Baseline for the Multivariate Comparison of Resting-State Networks , 2011, Front. Syst. Neurosci..

[51]  Angela R. Laird,et al.  Is There “One” DLPFC in Cognitive Action Control? Evidence for Heterogeneity From Co-Activation-Based Parcellation , 2012, Cerebral cortex.

[52]  Jessica A. Turner,et al.  The Cognitive Paradigm Ontology: Design and Application , 2011, Neuroinformatics.

[53]  K. Zilles,et al.  Coordinate‐based activation likelihood estimation meta‐analysis of neuroimaging data: A random‐effects approach based on empirical estimates of spatial uncertainty , 2009, Human brain mapping.

[54]  Stephen M. Smith,et al.  Investigations into resting-state connectivity using independent component analysis , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[55]  Mark W. Woolrich,et al.  Advances in functional and structural MR image analysis and implementation as FSL , 2004, NeuroImage.

[56]  Christian F. Beckmann,et al.  Modelling with independent components , 2012, NeuroImage.

[57]  Angela R Laird,et al.  Brainmap taxonomy of experimental design: Description and evaluation , 2005, Human brain mapping.

[58]  Daniel K Sodickson,et al.  Default-mode network disruption in mild traumatic brain injury. , 2012, Radiology.

[59]  Seungjin Choi,et al.  Independent Component Analysis , 2009, Handbook of Natural Computing.

[60]  T. Sejnowski,et al.  Independent component analysis of fMRI data: Examining the assumptions , 1998, Human brain mapping.

[61]  Kwangsun Yoo,et al.  Independent Component Analysis of Localized Resting-State Functional Magnetic Resonance Imaging Reveals Specific Motor Subnetworks , 2012, Brain Connect..

[62]  Michael D Greicius,et al.  Divergent Social Functioning in Behavioral Variant Frontotemporal Dementia and Alzheimer Disease: Reciprocal Networks and Neuronal Evolution , 2007, Alzheimer disease and associated disorders.

[63]  Xiangyu Long,et al.  Functional segmentation of the brain cortex using high model order group PICA , 2009, Human brain mapping.

[64]  P. Fox,et al.  Mapping context and content: the BrainMap model , 2002, Nature Reviews Neuroscience.