The Ectocarpus genome and the independent evolution of multicellularity in brown algae

Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity (Fig. 1). We report the 214 million base pair (Mbp) genome sequence of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for brown algae, closely related to the kelps (Fig. 1). Genome features such as the presence of an extended set of light-harvesting and pigment biosynthesis genes and new metabolic processes such as halide metabolism help explain the ability of this organism to cope with the highly variable tidal environment. The evolution of multicellularity in this lineage is correlated with the presence of a rich array of signal transduction genes. Of particular interest is the presence of a family of receptor kinases, as the independent evolution of related molecules has been linked with the emergence of multicellularity in both the animal and green plant lineages. The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic approaches to explore these and other aspects of brown algal biology further.

[1]  G. Russell Parallel growth patterns in algal epiphytes and Laminaria blades , 1983 .

[2]  G. Russell Formation of an ectocarpoid epiflora on blades of Laminaria digitata , 1983 .

[3]  R. Quatrano,et al.  Structure of the cell walls of marine algae and ecophysiological functions of the matrix polysaccharides. , 1988 .

[4]  J. Correa,et al.  Massive Prevalence of Viral DNA in Ectocarpus (Phaeophyceae, Ectocarpales) from Two Habitats in the North Atlantic and South Pacific , 2000 .

[5]  B. Leadbeater,et al.  Frequency of viral infection in a field population of Ectocarpus fasciculatus (Ectocarpales, Phaeophyceae) , 2000 .

[6]  C. Brownlee,et al.  Elemental propagation of calcium signals in response-specific patterns determined by environmental stimulus strength. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[7]  T. Pohl,et al.  The complete DNA sequence of the Ectocarpus siliculosus Virus EsV-1 genome. , 2001, Virology.

[8]  S. Shiu,et al.  Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[9]  M Lebert,et al.  The role of UV-B radiation in aquatic and terrestrial ecosystems--an experimental and functional analysis of the evolution of UV-absorbing compounds. , 2002, Journal of photochemistry and photobiology. B, Biology.

[10]  J. Cock,et al.  Receptor kinase signalling in plants and animals: distinct molecular systems with mechanistic similarities. , 2002, Current opinion in cell biology.

[11]  Colin Brownlee,et al.  Spatiotemporal patterning of reactive oxygen production and Ca(2+) wave propagation in fucus rhizoid cells. , 2002, The Plant cell.

[12]  L. Delage,et al.  The Brown Algal Kelp Laminaria digitata Features Distinct Bromoperoxidase and Iodoperoxidase Activities* , 2003, Journal of Biological Chemistry.

[13]  Debashish Bhattacharya,et al.  A molecular timeline for the origin of photosynthetic eukaryotes. , 2004, Molecular biology and evolution.

[14]  D. Scornet,et al.  PROPOSAL OF ECTOCARPUS SILICULOSUS (ECTOCARPALES, PHAEOPHYCEAE) AS A MODEL ORGANISM FOR BROWN ALGAL GENETICS AND GENOMICS 1,2 , 2004 .

[15]  Masatoshi Nei,et al.  Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer , 2006, Proceedings of the National Academy of Sciences.

[16]  Jian-Ping Xiong,et al.  Structure and mechanics of integrin-based cell adhesion. , 2007, Current opinion in cell biology.

[17]  M. Sokabe,et al.  Molecular and electrophysiological characterization of a mechanosensitive channel expressed in the chloroplasts of Chlamydomonas , 2007, Proceedings of the National Academy of Sciences.

[18]  H. Kawai,et al.  MOLECULAR PHYLOGENY OF DISCOSPORANGIUM MESARTHROCARPUM (PHAEOPHYCEAE) WITH A REINSTATEMENT OF THE ORDER DISCOSPORANGIALES 1 , 2007 .

[19]  Susana M. Coelho,et al.  Complex life cycles of multicellular eukaryotes: new approaches based on the use of model organisms. , 2007, Gene.

[20]  G. Saunders,et al.  RESOLVING EVOLUTIONARY RELATIONSHIPS AMONG THE BROWN ALGAE USING CHLOROPLAST AND NUCLEAR GENES 1 , 2008, Journal of phycology.

[21]  Stijn van Dongen,et al.  miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..

[22]  Susana M. Coelho,et al.  Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of research. , 2007, The New phytologist.

[23]  Susana M. Coelho,et al.  Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus , 2008, Development.

[24]  M. C. Feiters,et al.  Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry , 2008, Proceedings of the National Academy of Sciences.

[25]  C. Brownlee,et al.  Ca2+ signalling in plants and green algae--changing channels. , 2008, Trends in plant science.

[26]  I. Marín,et al.  The Roco protein family: a functional perspective , 2008, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[27]  P. Rouzé,et al.  Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress , 2009, Genome Biology.

[28]  G. Jürgens,et al.  Receptor-like kinases shape the plant , 2009, Nature Cell Biology.

[29]  M. McPeek,et al.  MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.