Modeling the effect of soil meso- and macropores topology on the biodegradation of a soluble carbon substrate

[1]  Valérie Pot,et al.  Numerical Calculation of Effective Diffusion in Unsaturated Porous Media by the TRT Lattice Boltzmann Method , 2014, Transport in Porous Media.

[2]  J. Rousk,et al.  The effects of glucose loading rates on bacterial and fungal growth in soil , 2014 .

[3]  James W. Jones,et al.  Working with Dynamic Crop Models: Methods, Tools and Examples for Agriculture and Environment , 2014 .

[4]  X. Raynaud,et al.  Spatial Ecology of Bacteria at the Microscale in Soil , 2014, PloS one.

[5]  C. Schadt,et al.  Representation of Dormant and Active Microbial Dynamics for Ecosystem Modeling , 2013, PloS one.

[6]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[7]  G. Kowalchuk,et al.  Micro-scale determinants of bacterial diversity in soil. , 2013, FEMS microbiology reviews.

[8]  O. Monga,et al.  Simulating microbial degradation of organic matter in a simple porous system using the 3-D diffusion-based model MOSAIC , 2013 .

[9]  L. Ruamps,et al.  Regulation of soil organic C mineralisation at the pore scale. , 2013, FEMS microbiology ecology.

[10]  Alain Rapaport,et al.  Impact of distribution heterogeneity of microorganisms and 2,4-D on biodegradation processes in soil : experiment and modelling , 2013 .

[11]  C. Rödenbeck,et al.  Unexpected control of soil carbon turnover by soil carbon concentration , 2013, Environmental Chemistry Letters.

[12]  B. Ball,et al.  Soil structure and greenhouse gas emissions: a synthesis of 20 years of experimentation , 2013 .

[13]  F. Moyano,et al.  Responses of soil heterotrophic respiration to moisture availability: An exploration of processes and models , 2013 .

[14]  S. Allison,et al.  Cooperation, Competition, and Coalitions in Enzyme-Producing Microbes: Social Evolution and Nutrient Depolymerization Rates , 2012, Front. Microbio..

[15]  F. Martin-Laurent,et al.  Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities. , 2012, FEMS microbiology ecology.

[16]  S. Peth,et al.  Exploration of soil micromorphology to identify coarse-sized OM assemblages in X-ray CT images of undisturbed cultivated soil cores , 2012 .

[17]  Pierre Régnier,et al.  A reactive transport modeling approach to simulate biogeochemical processes in pore structures with pore-scale heterogeneities , 2012, Environ. Model. Softw..

[18]  Cristian Picioreanu,et al.  The effect of biofilm permeability on bio‐clogging of porous media , 2012, Biotechnology and bioengineering.

[19]  Alasdair N. Houston,et al.  Emergent Behavior of Soil Fungal Dynamics: Influence of Soil Architecture and Water Distribution , 2012 .

[20]  E. Davidson,et al.  The Dual Arrhenius and Michaelis–Menten kinetics model for decomposition of soil organic matter at hourly to seasonal time scales , 2012 .

[21]  Valérie Pot,et al.  Numerical Simulation of 3D Liquid–Gas Distribution in Porous Media by a Two-Phase TRT Lattice Boltzmann Method , 2012, Transport in Porous Media.

[22]  W. Otten,et al.  From Dust Bowl to Dust Bowl: Soils are Still Very Much a Frontier of Science , 2011 .

[23]  C. Jones,et al.  Direct soil moisture controls of future global soil carbon changes: An important source of uncertainty , 2011 .

[24]  S. O. Petersen,et al.  Relating soil microbial activity to water content and tillage-induced differences in soil structure , 2011 .

[25]  L. Ruamps,et al.  Microbial biogeography at the soil pore scale , 2011 .

[26]  J. Lennon,et al.  Microbial seed banks: the ecological and evolutionary implications of dormancy , 2011, Nature Reviews Microbiology.

[27]  A. Konopka,et al.  Modeling Microbial Dynamics in Heterogeneous Environments: Growth on Soil Carbon Sources , 2011, Microbial Ecology.

[28]  Hans-Jörg Vogel,et al.  Quantification of soil structure based on Minkowski functions , 2010, Comput. Geosci..

[29]  Dani Or,et al.  Hydration-controlled bacterial motility and dispersal on surfaces , 2010, Proceedings of the National Academy of Sciences.

[30]  Matieyendou Lamboni,et al.  Multivariate global sensitivity analysis for dynamic crop models , 2009 .

[31]  Cédric Gommes,et al.  Practical methods for measuring the tortuosity of porous materials from binary or gray‐tone tomographic reconstructions , 2009 .

[32]  D. Or,et al.  Dynamics of Microbial Growth and Coexistence on Variably Saturated Rough Surfaces , 2009, Microbial Ecology.

[33]  J. Choi,et al.  Defined spatial structure stabilizes a synthetic multispecies bacterial community , 2008, Proceedings of the National Academy of Sciences.

[34]  O. Monga,et al.  3D geometric structures and biological activity: Application to microbial soil organic matter decomposition in pore space , 2008 .

[35]  Veerle Cnudde,et al.  Comparison of different nano- and micro-focus X-ray computed tomography set-ups for the visualization of the soil microstructure and soil organic matter , 2008, Comput. Geosci..

[36]  C. Poll,et al.  Micro-scale modelling of carbon turnover driven by microbial succession at a biogeochemical interface , 2008 .

[37]  D. d'Humières,et al.  Two-relaxation-time Lattice Boltzmann scheme: About parametrization, velocity, pressure and mixed boundary conditions , 2008 .

[38]  T. Addiscott,et al.  Mineralization of native soil organic matter is not regulated by the size, activity or composition of the soil microbial biomass-a new perspective , 2008 .

[39]  A. Brauman,et al.  MIOR: an individual‐based model for simulating the spatial patterns of soil organic matter microbial decomposition , 2007 .

[40]  John W. Crawford,et al.  Visualization, modelling and prediction in soil microbiology , 2007, Nature Reviews Microbiology.

[41]  Shmulik P. Friedman,et al.  Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review , 2007 .

[42]  Rainer Horn,et al.  Soil Micropore Development and Contributions to Soluble Carbon Transport within Macroaggregates , 2007 .

[43]  Deutsche Ausgabe World Reference Base for Soil Resources 2006 , 2007 .

[44]  Veerle Cnudde,et al.  Recent progress in X-ray CT as a geosciences tool , 2006 .

[45]  C. Chenu,et al.  Spatial Distribution of Microbial 2,4‐Dichlorophenoxy Acetic Acid Mineralization from Field to Microhabitat Scales , 2006 .

[46]  I. Ginzburg Equilibrium-type and link-type lattice Boltzmann models for generic advection and anisotropic-dispersion equation , 2005 .

[47]  R. Lark,et al.  Carbon losses from all soils across England and Wales 1978–2003 , 2005, Nature.

[48]  Dani Or,et al.  Simulation of gaseous diffusion in partially saturated porous media under variable gravity with lattice Boltzmann methods , 2005, Water resources research.

[49]  Albert J. Valocchi,et al.  Pore‐scale simulation of biomass growth along the transverse mixing zone of a model two‐dimensional porous medium , 2005 .

[50]  Hauke Harms,et al.  Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi. , 2005, Environmental science & technology.

[51]  Hans-Jörg Vogel,et al.  Comparison of a Lattice‐Boltzmann Model, a Full‐Morphology Model, and a Pore Network Model for Determining Capillary Pressure–Saturation Relationships , 2005 .

[52]  I M Young,et al.  Interactions and Self-Organization in the Soil-Microbe Complex , 2004, Science.

[53]  J. Crawford,et al.  Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil. , 2003, FEMS microbiology ecology.

[54]  C. Chenu,et al.  Spatial variability of 2,4-dichlorophenoxyacetic acid (2,4-D) mineralisation potential at a millimetre scale in soil , 2003 .

[55]  R. Jain,et al.  Bacterial Chemotaxis toward Environmental Pollutants: Role in Bioremediation , 2002, Applied and Environmental Microbiology.

[56]  J. Crawford,et al.  In Situ Spatial Patterns of Soil Bacterial Populations, Mapped at Multiple Scales, in an Arable Soil , 2002, Microbial Ecology.

[57]  K. Killham,et al.  Mineralisation of 2,4-dichlorophenol and glucose placed into the same or different hydrological domains as a bacterial inoculant , 2002 .

[58]  Peihua Qiu,et al.  Statistical Analysis of Microstructures in Materials Science , 2002, Technometrics.

[59]  G. Caria,et al.  Agronomic Value and Environmental Impacts of Urban Composts Used in Agriculture , 2002 .

[60]  G. Grundmann,et al.  Spatial Modeling of Nitrifier Microhabitats in Soil , 2001 .

[61]  Claire Chenu,et al.  Short-term changes in the spatial distribution of microorganisms in soil aggregates as affected by glucose addition , 2001, Biology and Fertility of Soils.

[62]  K. Svensson,et al.  Reversible transition between active and dormant microbial states in soil. , 2001, FEMS microbiology ecology.

[63]  Liwang Ma,et al.  Modeling Carbon and Nitrogen Dynamics for Soil Management , 2001 .

[64]  A. Guckert,et al.  Short-term utilisation of 14C-[U]glucose by soil microorganisms in relation to carbon availability , 2001 .

[65]  Grundmann,et al.  Geostatistical analysis of the distribution of NH(4)(+) and NO(2)(-)-oxidizing bacteria and serotypes at the millimeter scale along a soil transect. , 2000, FEMS microbiology ecology.

[66]  A. Konopka Theoretical Analysis of the Starvation Response under Substrate Pulses , 1999, Microbial Ecology.

[67]  D. H. Jennings,et al.  Fungal Biology: Understanding the Fungal Lifestyle , 1999 .

[68]  Otto Richter,et al.  Microbial growth in soil and nitrogen turnover : A theoretical model considering the activity state of microorganisms , 1998 .

[69]  Hans-Jörg Vogel,et al.  Morphological determination of pore connectivity as a function of pore size using serial sections , 1997 .

[70]  M. Ben Clennell,et al.  Tortuosity: a guide through the maze , 1997, Geological Society, London, Special Publications.

[71]  J. W. Barton,et al.  Determination of effective transport coefficients for bacterial migration in sand columns , 1995, Applied and environmental microbiology.

[72]  Shan,et al.  Lattice Boltzmann model for simulating flows with multiple phases and components. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[73]  D. Lide Handbook of Chemistry and Physics , 1992 .

[74]  J. Lobry,et al.  Monod's bacterial growth model revisited , 1992, Bulletin of mathematical biology.

[75]  M. V. van Loosdrecht,et al.  Influence of interfaces on microbial activity. , 1990, Microbiological reviews.

[76]  W. Verstraete,et al.  Estimation of active soil microbial biomass by mathematical analysis of respiration curves: Relation to conventional estimation of total biomass , 1987 .

[77]  R. J. Luxmoore,et al.  Micro-, Meso-, and Macroporosity of Soil , 1981 .