Soil bacterial taxonomic diversity is critical to maintaining the plant productivity.

[1]  Yong-guan Zhu,et al.  Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils , 2020, Soil Biology and Biochemistry.

[2]  Yunpeng Liu,et al.  Diversity-triggered deterministic bacterial assembly constrains community functions , 2019, Nature Communications.

[3]  S. Sunagawa,et al.  Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere , 2019, Nature Ecology & Evolution.

[4]  J. Peñuelas,et al.  Loss of soil microbial diversity exacerbates spread of antibiotic resistance , 2019, Soil Ecology Letters.

[5]  Falk Hildebrand,et al.  Structure and function of the global topsoil microbiome , 2018, Nature.

[6]  Gongwen Luo,et al.  Deciphering the associations between soil microbial diversity and ecosystem multifunctionality driven by long‐term fertilization management , 2018 .

[7]  C. Pieterse,et al.  The Soil-Borne Legacy , 2018, Cell.

[8]  M. Delgado‐Baquerizo,et al.  New insights into the role of microbial community composition in driving soil respiration rates , 2018 .

[9]  N. Fierer,et al.  A global atlas of the dominant bacteria found in soil , 2018, Science.

[10]  Yong-guan Zhu,et al.  Do manure-borne or indigenous soil microorganisms influence the spread of antibiotic resistance genes in manured soil? , 2017 .

[11]  Yong-guan Zhu,et al.  Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere. , 2017, Environmental science & technology.

[12]  Yong-guan Zhu,et al.  Application of genomic technologies to measure and monitor antibiotic resistance in animals , 2017, Annals of the New York Academy of Sciences.

[13]  E. Kuramae,et al.  Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere , 2016, The ISME Journal.

[14]  C. Violle,et al.  Effectiveness of ecological rescue for altered soil microbial communities and functions , 2016, The ISME Journal.

[15]  M. V. D. van der Heijden,et al.  An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability. , 2016, Trends in ecology & evolution.

[16]  J. Kirkegaard,et al.  Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil , 2016 .

[17]  Peter B Reich,et al.  Microbial diversity drives multifunctionality in terrestrial ecosystems , 2016, Nature Communications.

[18]  T. Fukami Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects , 2015 .

[19]  Scott Fortmann-Roe,et al.  Consistent and Clear Reporting of Results from Diverse Modeling Techniques: The A3 Method , 2015 .

[20]  Maja K. Sundqvist,et al.  Direct and indirect effects of climate change on soil microbial and soil microbial‐plant interactions: What lies ahead? , 2015 .

[21]  B. Singh,et al.  Water addition regulates the metabolic activity of ammonia oxidizers responding to environmental perturbations in dry subhumid ecosystems. , 2015, Environmental microbiology.

[22]  Richard D. Bardgett,et al.  Belowground biodiversity and ecosystem functioning , 2014, Nature.

[23]  Christopher Quince,et al.  Loss of microbial diversity in soils is coincident with reductions in some specialized functions. , 2014, Environmental microbiology.

[24]  M. V. D. van der Heijden,et al.  Soil biodiversity and soil community composition determine ecosystem multifunctionality , 2014, Proceedings of the National Academy of Sciences.

[25]  Colin W. Bell,et al.  High-throughput Fluorometric Measurement of Potential Soil Extracellular Enzyme Activities , 2013, Journal of visualized experiments : JoVE.

[26]  Diana R. Nemergut,et al.  Patterns and Processes of Microbial Community Assembly , 2013, Microbiology and Molecular Reviews.

[27]  Jarrett E. K. Byrnes,et al.  Investigating the relationship between biodiversity and ecosystem multifunctionality: challenges and solutions , 2013, 1305.1985.

[28]  Amadou Sarr,et al.  Loss in microbial diversity affects nitrogen cycling in soil , 2013, The ISME Journal.

[29]  C. Pieterse,et al.  The rhizosphere microbiome and plant health. , 2012, Trends in plant science.

[30]  Jarrett E. K. Byrnes,et al.  A global synthesis reveals biodiversity loss as a major driver of ecosystem change , 2012, Nature.

[31]  Cyrus A. Mallon,et al.  Microbial diversity determines the invasion of soil by a bacterial pathogen , 2012, Proceedings of the National Academy of Sciences.

[32]  S. Sørensen,et al.  454‐sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities , 2012 .

[33]  Eric P. Nawrocki,et al.  An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.

[34]  Jizhong Zhou,et al.  Reproducibility and quantitation of amplicon sequencing-based detection , 2011, The ISME Journal.

[35]  Robert C. Edgar,et al.  Search and clustering orders of magnitude faster than BLAST , 2010, Bioinform..

[36]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[37]  X. Le Roux,et al.  Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance. , 2007, Environmental microbiology.

[38]  A. Hector,et al.  Biodiversity and ecosystem multifunctionality , 2007, Nature.

[39]  J. Vivanco,et al.  The role of root exudates in rhizosphere interactions with plants and other organisms. , 2006, Annual review of plant biology.

[40]  D. Dubois,et al.  Soil Fertility and Biodiversity in Organic Farming , 2002, Science.

[41]  J. P. Grime,et al.  Biodiversity and Ecosystem Functioning: Current Knowledge and Future Challenges , 2001, Science.

[42]  R. Franklin,et al.  Impact of Dilution on Microbial Community Structure and Functional Potential: Comparison of Numerical Simulations and Batch Culture Experiments , 2001, Applied and Environmental Microbiology.

[43]  James Borneman,et al.  Bacterial Functional Redundancy along a Soil Reclamation Gradient , 2000, Applied and Environmental Microbiology.

[44]  Andy Liaw,et al.  Classification and Regression by randomForest , 2007 .