3D imaging of Sox2 enhancer clusters in embryonic stem cells
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Wesley R. Legant | R. Tjian | E. Betzig | Li Li | J. Grimm | L. Lavis | Zhe Liu | Bi-Chang Chen | Zhe J. Liu | W. Legant
[1] Phillip James Edwin Peebles,et al. Statistical analysis of catalogs of extragalactic objects. I. Theory , 1973 .
[2] M. G. Hauser,et al. Statistical analysis of catalogs of extragalactic objects. III - The Shane-Wirtanen and Zwicky catalogs , 1974 .
[3] The effect of receptor clustering on diffusion-limited forward rate constants. , 1983, Biophysical journal.
[4] B H Mayall,et al. Characterization of chromatin distribution in cell nuclei. , 1986, Cytometry.
[5] R. Tjian,et al. Analysis of Sp1 in vivo reveals mutiple transcriptional domains, including a novel glutamine-rich activation motif , 1988, Cell.
[6] R. Tjian,et al. DNA looping between sites for transcriptional activation: self-association of DNA-bound Sp1. , 1991, Genes & development.
[7] J S Wall,et al. DNA looping and Sp1 multimer links: a mechanism for transcriptional synergism and enhancement. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[8] Hoon Kim,et al. Monte Carlo Statistical Methods , 2000, Technometrics.
[9] Hiroshi Kimura,et al. Kinetics of Core Histones in Living Human Cells , 2001, The Journal of cell biology.
[10] S. Grewal,et al. Heterochromatin: new possibilities for the inheritance of structure. , 2002, Current opinion in genetics & development.
[11] R. Tjian,et al. A Glutamine-Rich Trail Leads to Transcription Factors , 2002, Science.
[12] R. Tjian,et al. Transcription regulation and animal diversity , 2003, Nature.
[13] C. Nusbaum,et al. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. , 2006, Genome research.
[14] J. Zeitlinger,et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells , 2006, Nature.
[15] J. Elf,et al. Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell , 2007, Science.
[16] N. D. Clarke,et al. Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells , 2008, Cell.
[17] A. Sergé,et al. Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes , 2008, Nature Methods.
[18] Istvan Albert,et al. GeneTrack - a genomic data processing and visualization framework , 2008, Bioinform..
[19] K. Jaqaman,et al. Robust single particle tracking in live cell time-lapse sequences , 2008, Nature Methods.
[20] Jan Ellenberg,et al. Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin , 2009, The EMBO journal.
[21] I. Amit,et al. Comprehensive mapping of long range interactions reveals folding principles of the human genome , 2011 .
[22] S. Halford,et al. An end to 40 years of mistakes in DNA-protein association kinetics? , 2009, Biochemical Society transactions.
[23] Bertrand R Caré,et al. Impact of receptor clustering on ligand binding , 2011, BMC Systems Biology.
[24] Biophysics of DNA-Protein Interactions , 2011 .
[25] Dieter W. Heermann,et al. Chromatin folding – from biology to polymer models and back , 2011, Journal of Cell Science.
[26] Prabuddha Sengupta,et al. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis , 2011, Nature Methods.
[27] B. Pugh,et al. Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution , 2011, Cell.
[28] Benjamin B. Machta,et al. Correlation Functions Quantify Super-Resolution Images and Estimate Apparent Clustering Due to Over-Counting , 2011, PloS one.
[29] L. Mirny,et al. Higher-order chromatin structure: bridging physics and biology. , 2012, Current opinion in genetics & development.
[30] Amos Tanay,et al. Robust 4C-seq data analysis to screen for regulatory DNA interactions , 2012, Nature Methods.
[31] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[32] J. McNally,et al. A benchmark for chromatin binding measurements in live cells , 2012, Nucleic acids research.
[33] M. Davidson,et al. Noninvasive Imaging beyond the Diffraction Limit of 3D Dynamics in Thickly Fluorescent Specimens , 2012, Cell.
[34] Jesse R. Dixon,et al. Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions , 2012, Nature.
[35] T. Cech,et al. RNA seeds higher-order assembly of FUS protein. , 2013, Cell reports.
[36] Jörg Langowski,et al. The statistical-mechanics of chromosome conformation capture , 2013, Nucleus.
[37] Mauro W. Costa,et al. Probing transcription factor diffusion dynamics in the living mammalian embryo with photoactivatable fluorescence correlation spectroscopy , 2013, Nature Communications.
[38] Christophe Zimmer,et al. FISH-quant: automatic counting of transcripts in 3D FISH images , 2013, Nature Methods.
[39] Rahul Roy,et al. Spatial organization of RNA polymerase II inside a mammalian cell nucleus revealed by reflected light-sheet superresolution microscopy , 2013, Proceedings of the National Academy of Sciences.
[40] David A. Orlando,et al. Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes , 2013, Cell.
[41] Sergey V. Razin,et al. Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub , 2013, Nucleic acids research.
[42] M. Dahan,et al. ViSP: representing single-particle localizations in three dimensions , 2013, Nature Methods.
[43] Ignacio Izeddin,et al. Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells , 2013, Science.
[44] S. McKnight,et al. Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains , 2013, Cell.
[45] Andrew S. Belmont,et al. Large-scale chromatin organization: the good, the surprising, and the still perplexing. , 2014, Current opinion in cell biology.
[46] Robert Tjian,et al. Looping Back to Leap Forward: Transcription Enters a New Era , 2014, Cell.
[47] M. Dahan,et al. Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus , 2014, eLife.
[48] Wesley R. Legant,et al. Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells , 2014, Cell.
[49] J. Tinevez,et al. TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO–IKK supramolecular structures , 2014, The Journal of cell biology.
[50] S. Stallinga,et al. The lateral and axial localization uncertainty in super-resolution light microscopy. , 2014, Chemphyschem : a European journal of chemical physics and physical chemistry.
[51] Wesley R. Legant,et al. Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution , 2014, Science.
[52] J. J. Macklin,et al. A general method to improve fluorophores for live-cell and single-molecule microscopy , 2014, Nature Methods.