Agent-based model provides insight into the mechanisms behind failed regeneration following volumetric muscle loss injury

Skeletal muscle possesses a remarkable capacity for repair and regeneration following a variety of injuries. When successful, this highly orchestrated regenerative process requires the contribution of several muscle resident cell populations including satellite stem cells (SSCs), fibroblasts, macrophages and vascular cells. However, volumetric muscle loss injuries (VML) involve simultaneous destruction of multiple tissue components (e.g., as a result of battlefield injuries or vehicular accidents) and are so extensive that they exceed the intrinsic capability for scarless wound healing and result in permanent cosmetic and functional deficits. In this scenario, the regenerative process fails and is dominated by an unproductive inflammatory response and accompanying fibrosis. The failure of current regenerative therapeutics to completely restore functional muscle tissue is not surprising considering the incomplete understanding of the cellular mechanisms that drive the regeneration response in the setting of VML injury. To begin to address this profound knowledge gap, we developed an agent-based model to predict the tissue remodeling response following surgical creation of a VML injury. Once the model was able to recapitulate key aspects of the tissue remodeling response in the absence of repair, we validated the model by simulating the tissue remodeling response to VML injury following implantation of either a decellularized extracellular matrix scaffold or a minced muscle graft. The model suggested that the SSC microenvironment and absence of pro-differentiation SSC signals were the most important aspects of failed muscle regeneration in VML injuries. The major implication of this work is that agent-based models may provide a much-needed predictive tool to optimize the design of new therapies, and thereby, accelerate the clinical translation of regenerative therapeutics for VML injuries.

[1]  Y. Nabeshima,et al.  Cell heterogeneity upon myogenic differentiation: down-regulation of MyoD and Myf-5 generates 'reserve cells'. , 1998, Journal of cell science.

[2]  SiriwardaneMevan,et al.  Cell and Growth Factor-Loaded Keratin Hydrogels for Treatment of Volumetric Muscle Loss in a Mouse Model , 2017 .

[3]  T. Walters,et al.  A Porcine Urinary Bladder Matrix Does Not Recapitulate the Spatiotemporal Macrophage Response of Muscle Regeneration after Volumetric Muscle Loss Injury , 2016, Cells Tissues Organs.

[4]  A. Cumano,et al.  Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells , 2012, Journal of Cell Science.

[5]  V. Petrov,et al.  Stimulation of Collagen Production by Transforming Growth Factor-&bgr;1 During Differentiation of Cardiac Fibroblasts to Myofibroblasts , 2002, Hypertension.

[6]  O. Halevy,et al.  HGF/SF is present in normal adult skeletal muscle and is capable of activating satellite cells. , 1998, Developmental biology.

[7]  T. Walters,et al.  Implantation of in vitro tissue engineered muscle repair constructs and bladder acellular matrices partially restore in vivo skeletal muscle function in a rat model of volumetric muscle loss injury. , 2013, Tissue engineering. Part A.

[8]  L. Boxhorn,et al.  Regulation of skeletal muscle satellite cell proliferation and differentiation by transforming growth factor‐beta, insulin‐like growth factor I, and fibroblast growth factor , 1989, Journal of cellular physiology.

[9]  G. Christ,et al.  Long-Term Evaluation of Functional Outcomes Following Rat Volumetric Muscle Loss Injury and Repair. , 2020, Tissue engineering. Part A.

[10]  R. de Waal Malefyt,et al.  Cytokines and chemokines are both expressed by human myoblasts: possible relevance for the immune pathogenesis of muscle inflammation. , 2000, International immunology.

[11]  M. Rudnicki,et al.  Asymmetric Self-Renewal and Commitment of Satellite Stem Cells in Muscle , 2007, Cell.

[12]  Nick Jagiella,et al.  Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results , 2015 .

[13]  A. McCulloch,et al.  Modeling β-Adrenergic Control of Cardiac Myocyte Contractility in Silico* , 2003, Journal of Biological Chemistry.

[14]  J. Chamberlain ACE inhibitor bulks up muscle , 2007, Nature Medicine.

[15]  S. Thrun,et al.  Substrate Elasticity Regulates Skeletal Muscle Stem Cell Self-Renewal in Culture , 2010, Science.

[16]  Ulrich Bosch,et al.  Cyclic mechanical stretching modulates secretion pattern of growth factors in human tendon fibroblasts , 2001, European Journal of Applied Physiology.

[17]  P. Muñoz-Cánoves,et al.  Regulation and dysregulation of fibrosis in skeletal muscle. , 2010, Experimental cell research.

[18]  G. Davis,et al.  3D Timelapse Analysis of Muscle Satellite Cell Motility , 2009, Stem cells.

[19]  R. Timpl,et al.  Synthesis of type IV collagen and laminin in cultures of skeletal muscle cells and their assembly on the surface of myotubes. , 1982, Developmental biology.

[20]  H. Vandenburgh,et al.  Collagen and Stretch Modulate Autocrine Secretion of Insulin-like Growth Factor-1 and Insulin-like Growth Factor Binding Proteins from Differentiated Skeletal Muscle Cells (*) , 1995, The Journal of Biological Chemistry.

[21]  J. C. McDermott,et al.  Transforming growth factor-β and myostatin signaling in skeletal muscle , 2008 .

[22]  D. Metzger,et al.  Orphan nuclear receptor NR4A1 regulates transforming growth factor-β signaling and fibrosis , 2015, Nature Medicine.

[23]  P. Bruni,et al.  TGFβ1 evokes myoblast apoptotic response via a novel signaling pathway involving S1P4 transactivation upstream of Rho‐kinase‐2 activation , 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[24]  T. Walters,et al.  Losartan administration reduces fibrosis but hinders functional recovery after volumetric muscle loss injury. , 2014, Journal of applied physiology.

[25]  K. Garg,et al.  Asynchronous inflammation and myogenic cell migration limit muscle tissue regeneration mediated by a cellular scaffolds. , 2015, Inflammation and cell signaling.

[26]  Sarah M. Greising,et al.  Unwavering Pathobiology of Volumetric Muscle Loss Injury , 2017, Scientific Reports.

[27]  Freddie H. Fu,et al.  Growth factors improve muscle healing in vivo. , 2000, The Journal of bone and joint surgery. British volume.

[28]  E. Froesch,et al.  Acute metabolic effects and half-lives of intravenously administered insulinlike growth factors I and II in normal and hypophysectomized rats. , 1986, The Journal of clinical investigation.

[29]  Sheila MacNeil,et al.  Modeling the effect of exogenous calcium on keratinocyte and HaCat cell proliferation and differentiation using an agent-based computational paradigm. , 2006, Tissue engineering.

[30]  B. Olwin,et al.  Syndecan-3 and syndecan-4 specifically mark skeletal muscle satellite cells and are implicated in satellite cell maintenance and muscle regeneration. , 2001, Developmental biology.

[31]  D. Meijer,et al.  Pharmacokinetic and Biodistribution Profile of Recombinant Human Interleukin-10 Following Intravenous Administration in Rats with Extensive Liver Fibrosis , 2004, Pharmaceutical Research.

[32]  Mark Van Dyke,et al.  The influence of extracellular matrix derived from skeletal muscle tissue on the proliferation and differentiation of myogenic progenitor cells ex vivo. , 2009, Biomaterials.

[33]  J. Dominov,et al.  Regeneration of transgenic skeletal muscles with altered timing of expression of the basic helix-loop-helix muscle regulatory factor MRF4. , 2003, The American journal of pathology.

[34]  G. Christ,et al.  The Potential of Combination Therapeutics for More Complete Repair of Volumetric Muscle Loss Injuries: The Role of Exogenous Growth Factors and/or Progenitor Cells in Implantable Skeletal Muscle Tissue Engineering Technologies , 2016, Cells Tissues Organs.

[35]  G. Pins,et al.  Rapid release of growth factors regenerates force output in volumetric muscle loss injuries. , 2015, Biomaterials.

[36]  Jay D. Humphrey,et al.  Toward a Multi-Scale Computational Model of Arterial Adaptation in Hypertension: Verification of a Multi-Cell Agent Based Model , 2011, Front. Physio..

[37]  T. Skalak,et al.  The FASEB Journal express article 10.1096/fj.03-0933fje. Published online February 6, 2004. Multicellular simulation predicts microvascular patterning and in silico tissue assembly , 2022 .

[38]  Chibeza C. Agley,et al.  Human skeletal muscle fibroblasts, but not myogenic cells, readily undergo adipogenic differentiation , 2014, Development.

[39]  M. Rudnicki,et al.  Cellular and molecular regulation of muscle regeneration. , 2004, Physiological reviews.

[40]  R Dalgleish,et al.  Human type III collagen gene expression is coordinately modulated with the type I collagen genes during fibroblast growth. , 1986, Biochemistry.

[41]  K. Wagner,et al.  Myostatin Directly Regulates Skeletal Muscle Fibrosis* , 2008, Journal of Biological Chemistry.

[42]  J. Wenke,et al.  Pathophysiology of Volumetric Muscle Loss Injury , 2016, Cells Tissues Organs.

[43]  Jenna L. Dziki,et al.  Matrix bound nanovesicle-associated IL-33 activates a pro-remodeling macrophage phenotype via a non-canonical, ST2-independent pathway. , 2019, Journal of immunology and regenerative medicine.

[44]  T. Walters,et al.  An acellular biologic scaffold does not regenerate appreciable de novo muscle tissue in rat models of volumetric muscle loss injury. , 2015, Biomaterials.

[45]  A. Hattori,et al.  Mechanical stretch induces activation of skeletal muscle satellite cells in vitro. , 2001, Experimental cell research.

[46]  J. Tidball,et al.  Interleukin-10 reduces the pathology of mdx muscular dystrophy by deactivating M1 macrophages and modulating macrophage phenotype. , 2011, Human molecular genetics.

[47]  M. Mora,et al.  Altered production of extra-cellular matrix components by muscle-derived Duchenne muscular dystrophy fibroblasts before and after TGF-β1 treatment , 2010, Cell and Tissue Research.

[48]  Freddie H. Fu,et al.  The timing of administration of a clinically relevant dose of losartan influences the healing process after contusion induced muscle injury. , 2013, Journal of applied physiology.

[49]  K. Grzelkowska-Kowalczyk The Importance of Extracellular Matrix in Skeletal Muscle Development and Function , 2016 .

[50]  Sarah M. Greising,et al.  Autologous minced muscle grafts improve endogenous fracture healing and muscle strength after musculoskeletal trauma , 2017, Physiological reports.

[51]  Jenna L. Dziki,et al.  An acellular biologic scaffold treatment for volumetric muscle loss: results of a 13-patient cohort study , 2016, npj Regenerative Medicine.

[52]  T. Walters,et al.  Therapeutic strategies for preventing skeletal muscle fibrosis after injury , 2015, Front. Pharmacol..

[53]  G. Christ,et al.  In Silico and In Vivo Studies Detect Functional Repair Mechanisms in a Volumetric Muscle Loss Injury. , 2019, Tissue engineering. Part A.

[54]  Douglas J. Weber,et al.  An Acellular Biologic Scaffold Promotes Skeletal Muscle Formation in Mice and Humans with Volumetric Muscle Loss , 2014, Science Translational Medicine.

[55]  A. Strömberg,et al.  Endurance exercise activates matrix metalloproteinases in human skeletal muscle. , 2009, Journal of applied physiology.

[56]  G. Clermont,et al.  Agent‐based model of inflammation and wound healing: insights into diabetic foot ulcer pathology and the role of transforming growth factor‐β1 , 2007 .

[57]  N. Van Rooijen,et al.  Inflammatory monocytes recruited after skeletal muscle injury switch into antiinflammatory macrophages to support myogenesis , 2007, The Journal of experimental medicine.

[58]  Shayn M Peirce,et al.  Agent‐based computational model of retinal angiogenesis simulates microvascular network morphology as a function of pericyte coverage , 2017, Microcirculation.

[59]  K. Vandusen,et al.  Growth Factors for Skeletal Muscle Tissue Engineering , 2016, Cells Tissues Organs.

[60]  Jennifer A. Lawson,et al.  Satellite cells , connective tissue fibroblasts and their interactions are crucial for muscle regeneration , 2022 .

[61]  P. Godowski,et al.  The pharmacokinetics, tissue localization, and metabolic processing of recombinant human hepatocyte growth factor after intravenous administration in rats. , 1994, Endocrinology.

[62]  M. Koutsilieris,et al.  Muscle regeneration: cellular and molecular events. , 2009, In vivo.

[63]  R. Lieber,et al.  Skeletal muscle fibroblasts in health and disease. , 2016, Differentiation; research in biological diversity.

[64]  P. Silver,et al.  MyoD is required for myogenic stem cell function in adult skeletal muscle. , 1996, Genes & development.

[65]  Sarah M. Greising,et al.  Contribution of minced muscle graft progenitor cells to muscle fiber formation after volumetric muscle loss injury in wild‐type and immune deficient mice , 2017, Physiological reports.

[66]  S. Blemker,et al.  A coupled framework of in situ and in silico analysis reveals the role of lateral force transmission in force production in volumetric muscle loss injuries. , 2019, Journal of biomechanics.

[67]  M. Longaker,et al.  Fibroblast response to hypoxia: the relationship between angiogenesis and matrix regulation. , 1999, The Journal of surgical research.

[68]  M. S. Hansen,et al.  Connective tissue fibroblasts and Tcf4 regulate myogenesis , 2011, Development.

[69]  J. Elisseeff,et al.  Developing a pro-regenerative biomaterial scaffold microenvironment requires T helper 2 cells , 2016, Science.

[70]  Shayn M. Peirce,et al.  Combining experiments with multi-cell agent-based modeling to study biological tissue patterning , 2007, Briefings Bioinform..

[71]  T. Walters,et al.  Muscle-derived decellularised extracellular matrix improves functional recovery in a rat latissimus dorsi muscle defect model. , 2013, Journal of plastic, reconstructive & aesthetic surgery : JPRAS.

[72]  Marissa Renardy,et al.  Data-Driven Model Validation Across Dimensions , 2019, Bulletin of mathematical biology.

[73]  Thomas L. Athey,et al.  Multiscale Coupling of an Agent-Based Model of Tissue Fibrosis and a Logic-Based Model of Intracellular Signaling , 2019, Front. Physiol..

[74]  Jenna L. Dziki,et al.  Immunomodulation and Mobilization of Progenitor Cells by Extracellular Matrix Bioscaffolds for Volumetric Muscle Loss Treatment. , 2016, Tissue engineering. Part A.

[75]  G. Pins,et al.  Biomimetic scaffolds for regeneration of volumetric muscle loss in skeletal muscle injuries. , 2015, Acta biomaterialia.

[76]  J. Tidball,et al.  IL-10 Triggers Changes in Macrophage Phenotype That Promote Muscle Growth and Regeneration , 2012, The Journal of Immunology.

[77]  B. Hinz,et al.  Hypoxia impairs skin myofibroblast differentiation and function. , 2010, The Journal of investigative dermatology.

[78]  V. Patel,et al.  MiR‐590 Promotes Transdifferentiation of Porcine and Human Fibroblasts Toward a Cardiomyocyte‐Like Fate by Directly Repressing Specificity Protein 1 , 2016, Journal of the American Heart Association.

[79]  A. Fischer A Functional Study of Cell Division in Cultures of Fibroblasts , 1925 .

[80]  F. Rossi,et al.  Nilotinib reduces muscle fibrosis in chronic muscle injury by promoting TNF-mediated apoptosis of fibro/adipogenic progenitors , 2015, Nature Medicine.

[81]  Shayn M Peirce,et al.  Spatial scaling in multiscale models: methods for coupling agent-based and finite-element models of wound healing , 2019, Biomechanics and modeling in mechanobiology.

[82]  G. Christ,et al.  In Silico and In Vivo Experiments Reveal M-CSF Injections Accelerate Regeneration Following Muscle Laceration , 2017, Annals of Biomedical Engineering.

[83]  Michael A. Rudnicki,et al.  Muscle injury activates resident fibro/adipogenic progenitors that facilitate myogenesis , 2010, Nature Cell Biology.

[84]  J. Tidball,et al.  Regulatory interactions between muscle and the immune system during muscle regeneration. , 2010, American journal of physiology. Regulatory, integrative and comparative physiology.

[85]  S. Blemker,et al.  Agent-based model illustrates the role of the microenvironment in regeneration in healthy and mdx skeletal muscle. , 2018, Journal of applied physiology.

[86]  Adam J. Engler,et al.  Myotubes differentiate optimally on substrates with tissue-like stiffness , 2004, The Journal of cell biology.

[87]  Catherine L. Ward,et al.  An Autologous Muscle Tissue Expansion Approach for the Treatment of Volumetric Muscle Loss , 2015, BioResearch open access.

[88]  F. Baaijens,et al.  Essential environmental cues from the satellite cell niche: optimizing proliferation and differentiation. , 2009, American journal of physiology. Cell physiology.

[89]  R. Dirksen,et al.  Inducible depletion of adult skeletal muscle stem cells impairs the regeneration of neuromuscular junctions , 2015, eLife.

[90]  Rahul C. Deo,et al.  Type 2 Innate Signals Stimulate Fibro/Adipogenic Progenitors to Facilitate Muscle Regeneration , 2013, Cell.

[91]  J. Hjortdal,et al.  Acute hypoxia influences collagen and matrix metalloproteinase expression by human keratoconus cells in vitro , 2017, PloS one.

[92]  M. Morgan,et al.  Gelatinase-B (Matrix Metalloproteinase-9; MMP-9) secretion is involved in the migratory phase of human and murine muscle cell cultures , 2000, Journal of Muscle Research and Cell Motility.

[93]  J. Faulkner,et al.  The regeneration of skeletal muscle fibers following injury: a review. , 1983, Medicine and science in sports and exercise.

[94]  S. Blemker,et al.  Multiscale models of skeletal muscle reveal the complex effects of muscular dystrophy on tissue mechanics and damage susceptibility , 2015, Interface Focus.

[95]  T. Walters,et al.  Co-delivery of a laminin-111 supplemented hyaluronic acid based hydrogel with minced muscle graft in the treatment of volumetric muscle loss injury , 2018, PloS one.

[96]  P. Spellman,et al.  Physiologically activated mammary fibroblasts promote postpartum mammary cancer. , 2017, JCI insight.

[97]  E. Schultz,et al.  Response of satellite cells to focal skeletal muscle injury , 1985, Muscle & nerve.

[98]  Yu Xin Wang,et al.  Building muscle: molecular regulation of myogenesis. , 2012, Cold Spring Harbor perspectives in biology.

[99]  J. Turnbull,et al.  The Satellite Cell Niche Regulates the Balance between Myoblast Differentiation and Self-Renewal via p53 , 2018, Stem cell reports.

[100]  R. Cooper,et al.  In vivo satellite cell activation via Myf5 and MyoD in regenerating mouse skeletal muscle. , 1999, Journal of cell science.

[101]  C. Rathbone,et al.  Transplantation of devitalized muscle scaffolds is insufficient for appreciable de novo muscle fiber regeneration after volumetric muscle loss injury , 2014, Cell and Tissue Research.

[102]  Sarah M. Greising,et al.  Inflammatory and Physiological Consequences of Debridement of Fibrous Tissue after Volumetric Muscle Loss Injury , 2017, Clinical and translational science.

[103]  G. Pins,et al.  Characterizing fibroblast migration on discrete collagen threads for applications in tissue regeneration. , 2004, Journal of biomedical materials research. Part A.

[104]  K. Patel,et al.  Decellularised skeletal muscles allow functional muscle regeneration by promoting host cell migration , 2018, Scientific Reports.

[105]  B. Wold,et al.  MyoD(-/-) satellite cells in single-fiber culture are differentiation defective and MRF4 deficient. , 2000, Developmental biology.

[106]  Wei Li,et al.  Pharmacokinetics, tissue distribution, and excretion of FGF-21 following subcutaneous administration in rats. , 2018, Drug testing and analysis.