A cerebellar ataxia locus identified by DNA pooling to search for linkage disequilibrium in an isolated population from the Cayman Islands.

A non-progressive recessive cerebellar ataxia was identified in a highly inbred Cayman island population. Cayman cerebellar ataxia is characterized by marked psychomotor retardation, and prominent cerebellar dysfunction manifested by nystagmus, intention tremor, dysarthric speech, and an ataxic gait. In this study, we identify linkage to chromosome 19p 13.3 using pooled DNA samples of affected individuals from an isolated population as PCR template for a genome wide screen with short tandem repeat markers. Our data demonstrate that the DNA pooling approach to identify disease gene loci is feasible using individuals from isolated populations in which kindred relationships are highly complex and exact relationships between all affected individuals are not known. Genetic fine mapping demonstrates that the genetic disease interval is approximately 9 cM, but contained within a small physical region. The existence of multiple individuals that are recombinant with flanking markers indicates that the disease interval can be further narrowed with additional markers.

[1]  J. Weber,et al.  Chromosomal assignment of the second locus for autosomal dominant cerebellar ataxia (SCA2) to chromosome 12q23–24.1 , 1993, Nature Genetics.

[2]  Nelson B. Freimer,et al.  Genome screening by searching for shared segments: mapping a gene for benign recurrent intrahepatic cholestasis , 1994, Nature Genetics.

[3]  J. Weissenbach,et al.  The gene for autosomal dominant cerebellar ataxia with pigmentary macular dystrophy maps to chromosome 3p12–p21.1 , 1995, Nature Genetics.

[4]  Tom Slezak,et al.  An integrated metric physical map of human chromosome 19 , 1995, Nature Genetics.

[5]  Shirley A. Miller,et al.  A simple salting out procedure for extracting DNA from human nucleated cells. , 1988, Nucleic acids research.

[6]  N. Morton Sequential tests for the detection of linkage. , 1955, American journal of human genetics.

[7]  M. Farrall,et al.  Mapping of mutation causing Friedreich's ataxia to human chromosome 9 , 1988, Nature.

[8]  B J Bassam,et al.  Fast and sensitive silver staining of DNA in polyacrylamide gels. , 1991, Analytical biochemistry.

[9]  G. Ebers,et al.  Mapping the gene for acetazolamide responsive hereditary paryoxysmal cerebellar ataxia to chromosome 19p. , 1995, Human molecular genetics.

[10]  V. Sheffield,et al.  Identification of a Bardet-Biedl syndrome locus on chromosome 3 and evaluation of an efficient approach to homozygosity mapping. , 1994, Human molecular genetics.

[11]  V. Sheffield,et al.  Novel approaches to linkage mapping. , 1995, Current opinion in genetics & development.

[12]  L. Peltonen,et al.  Random search for shared chromosomal regions in four affected individuals: the assignment of a new hereditary ataxia locus. , 1995, American journal of human genetics.

[13]  H. Orr,et al.  Spinocerebellar ataxia type 5 in a family descended from the grandparents of President Lincoln maps to chromosome 11 , 1994, Nature Genetics.

[14]  H. Orr,et al.  Localization of the autosomal dominant HLA-linked spinocerebellar ataxia (SCA1) locus, in two kindreds, within an 8-cM subregion of chromosome 6p. , 1991, American journal of human genetics.

[15]  K H Buetow,et al.  A collection of tri- and tetranucleotide repeat markers used to generate high quality, high resolution human genome-wide linkage maps. , 1995, Human molecular genetics.

[16]  A Sajantila,et al.  Determination of allele frequencies at loci with length polymorphism by quantitative analysis of DNA amplified from pooled samples. , 1993, PCR methods and applications.

[17]  K. Lindblad,et al.  Familial periodic cerebellar ataxia without myokymia maps to a 19-cM region on 19p13. , 1995, American journal of human genetics.

[18]  J. Weber,et al.  A gene for congenital, recessive deafness DFNB3 maps to the pericentromeric region of chromosome 17 , 1995, Nature Genetics.

[19]  K. Lange,et al.  Programs for pedigree analysis: Mendel, Fisher, and dGene , 1988, Genetic epidemiology.

[20]  J. Weissenbach,et al.  A gene for familial hemiplegic migraine maps to chromosome 19 , 1993, Nature Genetics.

[21]  V. Sheffield,et al.  Use of a DNA pooling strategy to identify a human obesity syndrome locus on chromosome 15. , 1995, Human molecular genetics.

[22]  Y. Kagawa,et al.  The gene for Machado–Joseph disease maps to human chromosome 14q , 1993, Nature Genetics.

[23]  J. Weissenbach,et al.  Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy maps to chromosome 19q12 , 1993, Nature Genetics.

[24]  T. Matise,et al.  Identity-by-descent and association mapping of a recessive gene for Hirschsprung disease on human chromosome 13q22. , 1994, Human molecular genetics.

[25]  P. van Bogaert,et al.  A gene for hereditary paroxysmal cerebellar ataxia maps to chromosome 19p , 1995, Annals of neurology.