Structural Analysis of E. coli hsp90 Reveals Dramatic Nucleotide-Dependent Conformational Rearrangements

In eukaryotes, the ubiquitous and abundant members of the 90 kilodalton heat-shock protein (hsp90) chaperone family facilitate the folding and conformational changes of a broad array of proteins important in cell signaling, proliferation, and survival. Here we describe the effects of nucleotides on the structure of full-length HtpG, the Escherichia coli hsp90 ortholog. By electron microscopy, the nucleotide-free, AMPPNP bound, and ADP bound states of HtpG adopt completely distinct conformations. Structural characterization of nucleotide-free and ADP bound HtpG was extended to higher resolution by X-ray crystallography. In the absence of nucleotide, HtpG exhibits an "open" conformation in which the three domains of each monomer present hydrophobic elements into the large cleft formed by the dimer. By contrast, ADP binding drives dramatic conformational changes that allow these hydrophobic elements to converge and shield each other from solvent, suggesting a mechanism by which nucleotides could control client protein binding and release.

[1]  A. Burlingame,et al.  Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94 , 2006, Protein science : a publication of the Protein Society.

[2]  Jason C. Young,et al.  Hsp90: a specialized but essential protein-folding tool. , 2001, The Journal of cell biology.

[3]  P. Workman Altered states: selectively drugging the Hsp90 cancer chaperone. , 2004, Trends in molecular medicine.

[4]  L. Gierasch,et al.  GroEL–Substrate Interactions Molding the Fold, or Folding the Mold? , 2000, Cell.

[5]  Hwa-Young Kim,et al.  Structures of the N-terminal and middle domains of E. coli Hsp90 and conformation changes upon ADP binding. , 2005, Structure.

[6]  Giulio Rastelli,et al.  Crystal structure and molecular modeling of 17-DMAG in complex with human Hsp90. , 2003, Chemistry & biology.

[7]  L. Pearl,et al.  Crystal structure of an Hsp90–nucleotide–p23/Sba1 closed chaperone complex , 2006, Nature.

[8]  J. Berger,et al.  Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI. , 2005, Structure.

[9]  C. Ban,et al.  Crystal Structure and ATPase Activity of MutL Implications for DNA Repair and Mutagenesis , 1998, Cell.

[10]  D. Agard,et al.  The crystal structure of the carboxy-terminal dimerization domain of htpG, the Escherichia coli Hsp90, reveals a potential substrate binding site. , 2004, Structure.

[11]  C. Chothia,et al.  The atomic structure of protein-protein recognition sites. , 1999, Journal of molecular biology.

[12]  J. Reinstein,et al.  Intrinsic Inhibition of the Hsp90 ATPase Activity* , 2006, Journal of Biological Chemistry.

[13]  D. Wigley,et al.  Crystal structure of an N-terminal fragment of the DNA gyrase B protein , 1991, Nature.

[14]  J. Reinstein,et al.  Dissection of the Contribution of Individual Domains to the ATPase Mechanism of Hsp90* , 2003, Journal of Biological Chemistry.

[15]  L. Pearl,et al.  Structural basis for inhibition of the Hsp90 molecular chaperone by the antitumor antibiotics radicicol and geldanamycin. , 1999, Journal of medicinal chemistry.

[16]  L. Pearl,et al.  Identification and Structural Characterization of the ATP/ADP-Binding Site in the Hsp90 Molecular Chaperone , 1997, Cell.

[17]  Chrisostomos Prodromou,et al.  Structural and functional analysis of the middle segment of hsp90: implications for ATP hydrolysis and client protein and cochaperone interactions. , 2003, Molecular cell.

[18]  C. Ban,et al.  Transformation of MutL by ATP Binding and Hydrolysis A Switch in DNA Mismatch Repair , 1999, Cell.

[19]  Jason C. Young,et al.  Pathways of chaperone-mediated protein folding in the cytosol , 2004, Nature Reviews Molecular Cell Biology.

[20]  Craig M. Ogata,et al.  Structural Analysis of Substrate Binding by the Molecular Chaperone DnaK , 1996, Science.

[21]  W Chiu,et al.  EMAN: semiautomated software for high-resolution single-particle reconstructions. , 1999, Journal of structural biology.

[22]  K. Yamamoto,et al.  Disassembly of Transcriptional Regulatory Complexes by Molecular Chaperones , 2002, Science.

[23]  Xavier Barril,et al.  Novel, potent small-molecule inhibitors of the molecular chaperone Hsp90 discovered through structure-based design. , 2005, Journal of medicinal chemistry.

[24]  Kurt Wüthrich,et al.  Direct NMR observation of a substrate protein bound to the chaperonin GroEL. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[25]  M. Mayer,et al.  Hsp70 chaperones: Cellular functions and molecular mechanism , 2005, Cellular and Molecular Life Sciences.

[26]  N. Rosen,et al.  Development of purine-scaffold small molecule inhibitors of Hsp90. , 2003, Current cancer drug targets.

[27]  D. Picard,et al.  Heat-shock protein 90, a chaperone for folding and regulation , 2002, Cellular and Molecular Life Sciences CMLS.

[28]  J. Buchner,et al.  Hsp90: Chaperoning signal transduction , 2001, Journal of cellular physiology.

[29]  D Baker,et al.  Mechanisms of protein folding. , 2001, Current opinion in structural biology.

[30]  Andrew Emili,et al.  Navigating the Chaperone Network: An Integrative Map of Physical and Genetic Interactions Mediated by the Hsp90 Chaperone , 2005, Cell.

[31]  D. Toft,et al.  The Assembly of Progesterone Receptor-hsp90 Complexes Using Purified Proteins* , 1998, The Journal of Biological Chemistry.

[32]  L. Neckers,et al.  Heat shock protein 90 , 2003, Current opinion in oncology.

[33]  Neal Rosen,et al.  Crystal Structure of an Hsp90–Geldanamycin Complex: Targeting of a Protein Chaperone by an Antitumor Agent , 1997, Cell.

[34]  M. Inouye,et al.  GHKL, an emergent ATPase/kinase superfamily. , 2000, Trends in biochemical sciences.

[35]  M. Sameshima,et al.  Monomer arrangement in HSP90 dimer as determined by decoration with N and C-terminal region specific antibodies. , 1999, Journal of molecular biology.

[36]  W. Pratt,et al.  Regulation of Signaling Protein Function and Trafficking by the hsp90/hsp70-Based Chaperone Machinery 1 , 2003, Experimental biology and medicine.

[37]  S. Lindquist,et al.  HSP90 and the chaperoning of cancer , 2005, Nature Reviews Cancer.