Soil biodiversity, biological indicators and soil ecosystem services—an overview of European approaches

Soil biota are essential for many soil processes and functions, yet there are increasing pressures on soil biodiversity and soil degradation remains a pertinent issue. The sustainable management of soils requires soil monitoring, including biological indicators, to be able to relate land use and management to soil functioning and ecosystem services. Since the 1990s, biological soil parameters have been assessed in an increasing number of field trials and monitoring programmes across Europe. The development and effective use of meaningful and widely applicable bio-indicators, however, continue to be challenging tasks. This paper aims to provide an overview of current knowledge on the characterization and assessment of soil biodiversity. Examples of biological soil indicators and monitoring approaches are presented. Furthermore the value of databases for developing a better understanding of the relationship between soil management, soil functions and ecosystem services is discussed. We conclude that integration of monitoring approaches and data sets offers good opportunities for advancing ecological theory as well as application of such knowledge by land managers and other decision makers.

[1]  H. Boizard,et al.  The effect of tillage type and cropping system on earthworm communities, macroporosity and water infiltration , 2009 .

[2]  C. Emmerling,et al.  Impact of five different tillage systems on soil organic carbon content and the density, biomass, and community composition of earthworms after a ten year period. , 2009 .

[3]  P. Lavelle,et al.  Soil biodiversity: functions, threats and tools for policy makers , 2010 .

[4]  M. V. D. van der Heijden,et al.  Socialism in soil? The importance of mycorrhizal fungal networks for facilitation in natural ecosystems , 2009 .

[5]  K. Treseder,et al.  Microbial communities and their relevance for ecosystem models: Decomposition as a case study , 2010 .

[6]  J. Römbke,et al.  Indicators for Monitoring Soil Biodiversity , 2009, Integrated environmental assessment and management.

[7]  Hervas De Diego Francisco,et al.  The State of Soil in Europe : A contribution of the JRC to the European Environment Agency’s Environment State and Outlook Report— SOER 2010 , 2012 .

[8]  D. Wall,et al.  Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity–function relationships , 2011 .

[9]  L. Montanarella,et al.  Soil biodiversity monitoring in Europe: ongoing activities and challenges , 2009 .

[10]  L. Brussaard,et al.  Agricultural intensification and de-intensification differentially affect taxonomic diversity of predatory mites, earthworms, enchytraeids, nematodes and bacteria , 2012 .

[11]  Sandra Díaz,et al.  Towards an assessment of multiple ecosystem processes and services via functional traits , 2010, Biodiversity and Conservation.

[12]  D. Cluzeau,et al.  Earthworm indicators as tools for soil monitoring, characterizationand risk assessment. An example from the national Bioindicator programme(France). Pedobiologia. 54, S77-S87. , 2011 .

[13]  L. Ranjard,et al.  Metaproteomics: A New Approach for Studying Functional Microbial Ecology , 2007, Microbial Ecology.

[14]  J. Oades The role of biology in the formation, stabilization and degradation of soil structure , 1993 .

[15]  John C. Avise,et al.  Resistance, Resilience, and Redundancy in Microbial Communities , 2008 .

[16]  D. Coleman,et al.  Detritus Food Webs in Conventional and No-tillage Agroecosystems , 1986 .

[17]  W. Rossing,et al.  Exploring multi-scale trade-offs between nature conservation, agricultural profits and landscape quality—A methodology to support discussions on land-use perspectives , 2007 .

[18]  Michiel Rutgers,et al.  The use of microorganisms in ecological soil classification and assessment concepts. , 2005, Ecotoxicology and environmental safety.

[19]  L. Brussaard,et al.  A method to assess ecosystem services developed from soil attributes with stakeholders and data of four arable farms. , 2012, The Science of the total environment.

[20]  B. Govaerts,et al.  Microbial Community Structure and Diversity as Indicators for Evaluating Soil Quality , 2010 .

[21]  P. Lavelle,et al.  GISQ, a multifunctional indicator of soil quality , 2007 .

[22]  D. Wardle Impacts of Disturbance on Detritus Food Webs in Agro-Ecosystems of Contrasting Tillage and Weed Management Practices , 1995 .

[23]  S. Dekker,et al.  Modelling C and N mineralisation in soil food webs during secondary succession on ex-arable land , 2011 .

[24]  J. W. Groenigen,et al.  Interactions between residue placement and earthworm ecological strategy affect aggregate turnover and N2O dynamics in agricultural soil , 2010 .

[25]  F. Makeschin,et al.  Land-use change in a tropical mountain rainforest region of southern Ecuador affects soil microorganisms and nutrient cycling , 2012, Biogeochemistry.

[26]  R. Bardgett The biology of soil , 2005 .

[27]  Johannes Helder,et al.  Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown Clades. , 2006, Molecular biology and evolution.

[28]  Tom Bongers,et al.  The maturity index: an ecological measure of environmental disturbance based on nematode species composition , 1990, Oecologia.

[29]  B. Griffiths,et al.  Insights into the resistance and resilience of the soil microbial community. , 2013, FEMS microbiology reviews.

[30]  Alain Bellido,et al.  Earthworms used as indicators of agricultural managements. , 2006 .

[31]  Diana H. Wall,et al.  Biodiversity in the dark , 2010 .

[32]  E. K. Hall,et al.  Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches , 2011, Ecosystems.

[33]  M. Wood Soil as a habitat for organisms , 1995 .

[34]  J. Anderson,et al.  Decomposition in Terrestrial Ecosystems , 1979 .

[35]  F. Makeschin,et al.  Soil organic matter and microbial community structure in set-aside and intensively managed arable soils in NE-Saxony, Germany , 2008 .

[36]  L. Brussaard Ecosystems services provided by the soil biota , 2012 .

[37]  E. Lichtfouse Biodiversity, biofuels, agroforestry and conservation agriculture , 2011 .

[38]  L. Brussaard,et al.  Soil meso- and macrofauna in two agricultural systems: factors affecting population dynamics and evaluation of their role in carbon and nitrogen dynamics , 1994 .

[39]  Ainsworth Donovan,et al.  Thematic strategy for soil protection , 2014 .

[40]  M Rutgers,et al.  How to calculate the spatial distribution of ecosystem services--natural attenuation as example from The Netherlands. , 2012, The Science of the total environment.

[41]  R. C. Foster Microenvironments of soil microorganisms , 1988, Biology and Fertility of Soils.

[42]  James E. M. Watson,et al.  Biodiversity targets after 2010 , 2010 .

[43]  A. Gerhardt Bioindicator Species and Their Use in Biomonitoring , 2011 .

[44]  S. Yasmin,et al.  Effects of Pesticides on the Growth and Reproduction of Earthworm: A Review , 2010 .

[45]  A.M.T. Bongers,et al.  A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. , 2009 .

[46]  B. Griffiths,et al.  Molecular sequencing and morphological analysis of a nematode community , 2006 .

[47]  L. Brussaard,et al.  Biological measurements in a nationwide soil monitoring network , 2009 .

[48]  D. Reheul,et al.  Soil biological quality after 36 years of ley-arable cropping, permanent grassland and permanent arable cropping , 2008 .

[49]  P. Brookes,et al.  Fungal and bacterial growth responses to N fertilization and pH in the 150-year 'Park Grass' UK grassland experiment. , 2011, FEMS microbiology ecology.

[50]  D. Coleman,et al.  Earthworms and enchytraeids in conventional and no-tillage agroecosystems: A biocide approach to assess their role in organic matter breakdown , 1990, Biology and Fertility of Soils.

[51]  L. Montanarella,et al.  European Atlas of Soil Biodiversity , 2010 .

[52]  J. Lawton,et al.  Organisms as ecosystem engineers , 1994 .

[53]  R. Noss Indicators for Monitoring Biodiversity: A Hierarchical Approach , 1990 .

[54]  K. Pregitzer,et al.  Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest , 2011, PloS one.

[55]  J. Bengtsson Which species? What kind of diversity? Which ecosystem function? Some problems in studies of relations between biodiversity and ecosystem function , 1998 .

[56]  Simon Oakley,et al.  Vegetation composition promotes carbon and nitrogen storage in model grassland communities of contrasting soil fertility , 2009 .

[57]  M. Patterson,et al.  A framework for classifying and quantifying the natural capital and ecosystem services of soils , 2010 .

[58]  P. Curmi,et al.  Relationships between earthworm communities and burrow numbers under different land use systems. , 2010 .

[59]  K. Ritz,et al.  Soil health in agricultural systems , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[60]  C. Pelosi,et al.  Earthworm community in conventional, organic and direct seeding with living mulch cropping systems , 2009, Agronomy for Sustainable Development.

[61]  A. Breure,et al.  Risk Assessment, Microbial Communities, and Pollution-Induced Community Tolerance , 1999 .

[62]  J. Marinissen,et al.  Soil structure and characteristics of organic matter in two orchards differing in earthworm activity , 2003 .

[63]  John W. Doran,et al.  Soil health and sustainability: managing the biotic component of soil quality , 2000 .

[64]  K. Sayre,et al.  Earthworm activity and soil structural changes under conservation agriculture in central Mexico , 2012 .

[65]  J. Cortet,et al.  Integration of biodiversity in soil quality monitoring: Baselines for microbial and soil fauna parameters for different land-use types , 2012 .

[66]  A. Bispo,et al.  Earthworm indicators as tools for soil monitoring, characterization and risk assessment. An example from the national Bioindicator programme (France) , 2011 .

[67]  P. Lavelle,et al.  This ped is my ped: Visual separation and near infrared spectra allow determination of the origins of soil macroaggregates , 2007 .

[68]  José Paulo Sousa,et al.  Changes in Collembola richness and diversity along a gradient of land-use intensity: A pan European study , 2006 .

[69]  Karl Ritz,et al.  Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development , 2009 .

[70]  P. Lavelle,et al.  IBQS: A synthetic index of soil quality based on soil macro-invertebrate communities , 2011 .

[71]  Gary Lanigan,et al.  Implications of the proposed Soil Framework Directive on agricultural systems in Atlantic Europe – a review , 2010 .

[72]  P. D. de Ruiter,et al.  A Belowground Perspective on Dutch Agroecosystems: How Soil Organisms Interact to Support Ecosystem Services , 2011 .

[73]  Pedro Martins da Silva,et al.  Functional traits as indicators of biodiversity response to land use changes across ecosystems and organisms , 2010, Biodiversity and Conservation.

[74]  P. Krogh,et al.  Measuring basal soil respiration across Europe: Do incubation temperature and incubation period matter? , 2014 .