DH-GAN: A Physics-driven Untrained Generative Adversarial Network for 3D Microscopic Imaging using Digital Holography

Digital holography is a 3D imaging technique by emitting a laser beam with a plane wavefront to an object and measuring the intensity of the diffracted waveform, called holograms. The object’s 3D shape can be obtained by numerical analysis of the captured holograms and recovering the incurred phase. Recently, deep learning (DL) methods have been used for more accurate holographic processing. However, most supervised methods require large datasets to train the model, which is rarely available in most DH applications due to the scarcity of samples or privacy concerns. A few one-shot DL-based recovery methods exist with no reliance on large datasets of paired images. Still, most of these methods often neglect the underlying physics law that governs wave propagation. These methods offer a black-box operation, which is not explainable, generalizable, and transferrable to other samples and applications. In this work, we propose a new DL architecture based on generative adversarial networks that uses a discriminative network for realizing a semantic measure for reconstruction quality while using a generative network as a function approximator to model the inverse of hologram formation. We impose smoothness on the background part of the recovered image using a progressive masking module powered by simulated annealing to enhance the reconstruction quality. The proposed method is one of its kind that exhibits high transferability to similar samples, which facilitates its fast deployment in time-sensitive applications without the need for retraining the network. The results show a considerable improvement to competitor methods in reconstruction quality (about 5 dB PSNR gain) and robustness to noise (about 50% reduction in PSNR vs noise increase rate). An additional 3 dB gain is observed for activating the adaptive masking module. Moreover, our model is sufficiently robust against noise and tolerates AWGN noise up to σ = 10 . It shows only about 0.4 dB decay per unit noise variance increase, lower than similar methods. Our method elevates the DL-based digital holography to higher levels with a subtle computation increment. Furthermore, we explored transfer learning to enable fast utilization of the proposed method in time-constrained applications. Our experiments show that using a model trained for a similar sample can offer a reasonable reconstruction quality. Using transfer learning by borrowing network weights trained for a similar sample and performing additional 500 iterations for the new sample brings a considerable gain of about 12 dB compared to independent training with 500 iterations. This observation suggests that the developed model is highly transferrable between samples of the same type, but transferability across different sample types needs further investigation.

[1]  E. Lam,et al.  Deep learning for digital holography: a review. , 2021, Optics express.

[2]  Baoli Yao,et al.  Dual-wavelength in-line digital holography with untrained deep neural networks , 2021, Photonics Research.

[3]  Minglang Yin,et al.  Physics-informed neural networks (PINNs) for fluid mechanics: a review , 2021, Acta Mechanica Sinica.

[4]  H. Latifi,et al.  Holographic optical field recovery using a regularized untrained deep decoder network , 2021, Scientific Reports.

[5]  B. Javidi,et al.  Compact and low-cost instrument for digital holographic microscopy of immobilized micro-particles , 2021 .

[6]  Tobias Ritschel,et al.  PhaseGAN: a deep-learning phase-retrieval approach for unpaired datasets. , 2020, Optics express.

[7]  Abolfazl Razi,et al.  Consistency Penalized Graph Matching for Image-Based Identification of Dendritic Patterns , 2020, IEEE Access.

[8]  Mingguang Shan,et al.  Deep-learning-enhanced Digital Holographic Autofocus Imaging , 2020, ICDSP.

[9]  George Barbastathis,et al.  Phase imaging with an untrained neural network , 2020, Light: Science & Applications.

[10]  Caojin Yuan,et al.  Digital Holographic Reconstruction Based on Deep Learning Framework With Unpaired Data , 2020, IEEE Photonics Journal.

[11]  Abolfazl Razi,et al.  Deep DIH: Single-Shot Digital In-Line Holography Reconstruction by Deep Learning , 2020, IEEE Access.

[12]  Tatiana Latychevskaia,et al.  Iterative phase retrieval for digital holography: tutorial. , 2019, Journal of the Optical Society of America. A, Optics, image science, and vision.

[13]  Aydogan Ozcan,et al.  Bright-field holography: cross-modality deep learning enables snapshot 3D imaging with bright-field contrast using a single hologram , 2018, Light: Science & Applications.

[14]  Reinhard Heckel,et al.  Deep Decoder: Concise Image Representations from Untrained Non-convolutional Networks , 2018, ICLR.

[15]  Guofan Jin,et al.  Twin-Image-Free Holography: A Compressive Sensing Approach. , 2018, Physical review letters.

[16]  Guohai Situ,et al.  eHoloNet: a learning-based end-to-end approach for in-line digital holographic reconstruction. , 2018, Optics express.

[17]  Jun Tanida,et al.  Deep-learning-generated holography. , 2018, Applied optics.

[18]  Andrea Vedaldi,et al.  Deep Image Prior , 2017, International Journal of Computer Vision.

[19]  Yibo Zhang,et al.  Phase recovery and holographic image reconstruction using deep learning in neural networks , 2017, Light: Science & Applications.

[20]  Abolfazl Razi,et al.  A graph matching algorithm for user authentication in data networks using image-based physical unclonable functions , 2017, 2017 Computing Conference.

[21]  Gintautas Palubinskas,et al.  Image similarity/distance measures: what is really behind MSE and SSIM? , 2017 .

[22]  Li Fei-Fei,et al.  Perceptual Losses for Real-Time Style Transfer and Super-Resolution , 2016, ECCV.

[23]  Eugene Serabyn,et al.  Robust, compact implementation of an off-axis digital holographic microscope. , 2015, Optics express.

[24]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[25]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[26]  Tatiana Latychevskaia,et al.  Practical algorithms for simulation and reconstruction of digital in-line holograms. , 2014, Applied optics.

[27]  Simon Y. Berkovich,et al.  Internet of Things as a Methodological Concept , 2013, 2013 Fourth International Conference on Computing for Geospatial Research and Application.

[28]  Myung K. Kim Principles and techniques of digital holographic microscopy , 2010 .

[29]  Ayman Alfalou,et al.  Optical image compression and encryption methods , 2009 .

[30]  T. Latychevskaia,et al.  Solution to the twin image problem in holography. , 2006, Physical review letters.

[31]  Chun-Min Lo,et al.  High-resolution quantitative phase-contrast microscopy by digital holography. , 2005, Optics express.

[32]  S. Wilkins,et al.  Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object , 2002, Journal of microscopy.

[33]  W Xu,et al.  Digital in-line holography for biological applications , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[34]  R. Jenny,et al.  Fundamentals of Optics , 2001 .

[35]  D Mendlovic,et al.  Gerchberg-Saxton algorithm applied in the fractional Fourier or the Fresnel domain. , 1996, Optics letters.

[36]  Denis Joyeux,et al.  Iterative algorithms for twin-image elimination in in-line holography using finite-support constraints , 1993 .

[37]  P. Scott,et al.  Phase retrieval and twin-image elimination for in-line Fresnel holograms , 1987 .

[38]  M. Teague Deterministic phase retrieval: a Green’s function solution , 1983 .

[39]  R. Gerchberg A practical algorithm for the determination of phase from image and diffraction plane pictures , 1972 .

[40]  D. Gabor A New Microscopic Principle , 1948, Nature.