Application of Independent Component Analysis Techniques in Speckle Noise Reduction of Retinal OCT Images.

Optical Coherence Tomography (OCT) is an emerging technique in the field of biomedical imaging, with applications in ophthalmology, dermatology, coronary imaging etc. OCT images usually suffer from a granular pattern, called speckle noise, which restricts the process of interpretation. Therefore the need for speckle noise reduction techniques is of high importance. To the best of our knowledge, use of Independent Component Analysis (ICA) techniques has never been explored for speckle reduction of OCT images. Here, a comparative study of several ICA techniques (InfoMax, JADE, FastICA and SOBI) is provided for noise reduction of retinal OCT images. Having multiple B-scans of the same location, the eye movements are compensated using a rigid registration technique. Then, different ICA techniques are applied to the aggregated set of B-scans for extracting the noise-free image. Signal-to-Noise-Ratio (SNR), Contrast-to-Noise-Ratio (CNR) and Equivalent-Number-of-Looks (ENL), as well as analysis on the computational complexity of the methods, are considered as metrics for comparison. The results show that use of ICA can be beneficial, especially in case of having fewer number of B-scans.

[1]  Aleksandra Pizurica,et al.  Multiresolution denoising for optical coherence tomography: a review and evaluation , 2008 .

[2]  L. Christophorou Science , 2018, Emerging Dynamics: Science, Energy, Society and Values.

[3]  Erkki Oja,et al.  Independent component analysis: algorithms and applications , 2000, Neural Networks.

[4]  João Manuel R. S. Tavares,et al.  Computational modeling of objects presented in images: fundamentals, methods and applications , 2014, Lecture Notes in Computer Science.

[5]  H. Gunshin,et al.  A review of independent component analysis application to microarray gene expression data. , 2008, BioTechniques.

[6]  Zeyun Yu,et al.  Fast Mesh-Based Medical Image Registration , 2014, ISVC.

[7]  R. Oostenveld,et al.  Independent EEG Sources Are Dipolar , 2012, PloS one.

[8]  D. Signorini,et al.  Neural networks , 1995, The Lancet.

[9]  David Alonso-Caneiro,et al.  Speckle reduction in optical coherence tomography imaging by affine-motion image registration. , 2011, Journal of biomedical optics.

[10]  Mohammad R. N. Avanaki,et al.  Spatial Compounding Algorithm for Speckle Reduction of Dynamic Focus OCT Images , 2013, IEEE Photonics Technology Letters.

[11]  H. M. Salinas,et al.  Comparison of PDE-Based Nonlinear Diffusion Approaches for Image Enhancement and Denoising in Optical Coherence Tomography , 2007, IEEE Transactions on Medical Imaging.

[12]  Thomas Martini Jørgensen,et al.  Enhancing the signal-to-noise ratio in ophthalmic optical coherence tomography by image registration--method and clinical examples. , 2007, Journal of biomedical optics.

[13]  Zeyun Yu,et al.  State-of-the-Art in Retinal Optical Coherence Tomography Image Analysis , 2014, Quantitative imaging in medicine and surgery.

[14]  J. Schmitt,et al.  Speckle in optical coherence tomography. , 1999, Journal of biomedical optics.

[15]  Nicolas Pugeault,et al.  Advances in Visual Computing , 2007, Lecture Notes in Computer Science.

[16]  Zeyun Yu,et al.  Curvature-Based Registration for Slice Interpolation of Medical Images , 2014, CompIMAGE.

[17]  Juichi Noda,et al.  Polarization-independent interferometric optical-time-domain reflectometer , 1991 .

[18]  Terrence J. Sejnowski,et al.  An Information-Maximization Approach to Blind Separation and Blind Deconvolution , 1995, Neural Computation.

[19]  Arnaud Delorme,et al.  EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis , 2004, Journal of Neuroscience Methods.

[20]  Shutao Li,et al.  Fast Acquisition and Reconstruction of Optical Coherence Tomography Images via Sparse Representation , 2013, IEEE Transactions on Medical Imaging.

[21]  A. Fercher,et al.  Speckle reduction in optical coherence tomography by frequency compounding. , 2003, Journal of biomedical optics.

[22]  Zeyun Yu,et al.  Sparse and low rank decomposition based batch image alignment for speckle reduction of retinal OCT images , 2014, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

[23]  J M Schmitt,et al.  Array detection for speckle reduction in optical coherence microscopy , 1997, Physics in medicine and biology.

[24]  Jean-Franois Cardoso High-Order Contrasts for Independent Component Analysis , 1999, Neural Computation.

[25]  Richard Baraniuk,et al.  The Dual-tree Complex Wavelet Transform , 2007 .

[26]  Soo-Young Lee Blind Source Separation and Independent Component Analysis: A Review , 2005 .

[27]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[28]  Sylvain Chartier,et al.  An Introduction to Independent Component Analysis: InfoMax and FastICA algorithms , 2010 .

[29]  Athanasios Papoulis,et al.  Probability, Random Variables and Stochastic Processes , 1965 .

[30]  Aarnout Brombacher,et al.  Probability... , 2009, Qual. Reliab. Eng. Int..

[31]  É. Moulines,et al.  Second Order Blind Separation of Temporally Correlated Sources , 1993 .

[32]  Aapo Hyvärinen,et al.  Fast and robust fixed-point algorithms for independent component analysis , 1999, IEEE Trans. Neural Networks.

[33]  Andrzej Cichocki,et al.  Adaptive Blind Signal and Image Processing - Learning Algorithms and Applications , 2002 .

[34]  Alexander Wong,et al.  General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery. , 2010, Optics express.

[35]  Thomas M. Cover,et al.  Elements of Information Theory , 2005 .

[37]  Seungjin Choi Blind Source Separation and Independent Component Analysis : A Review , 2004 .

[38]  G. Ripandelli,et al.  Optical coherence tomography. , 1998, Seminars in ophthalmology.

[39]  Ganesh R. Naik,et al.  An Overview of Independent Component Analysis and Its Applications , 2011, Informatica.

[40]  J. Cardoso,et al.  Blind beamforming for non-gaussian signals , 1993 .

[41]  Hao Shen,et al.  Fast Kernel-Based Independent Component Analysis , 2009, IEEE Transactions on Signal Processing.