Biogenesis of Phycobiliproteins

The Synechococcus sp. PCC 7002 genome encodes three genes, denoted cpcS-I, cpcU, cpcV, with sequence similarity to cpeS. CpcS-I copurified with His6-tagged (HT) CpcU as a heterodimer, CpcSU. When CpcSU was assayed for bilin lyase activity in vitro with phycocyanobilin (PCB) and apophycocyanin, the reaction product had an absorbance maximum of 622 nm and was highly fluorescent (λmax = 643 nm). In control reactions with PCB and apophycocyanin, the products had absorption maxima at 635 nm and very low fluorescence yields, indicating they contained the more oxidized mesobiliverdin (Arciero, D. M., Bryant, D. A., and Glazer, A. N. (1988) J. Biol. Chem. 263, 18343–18349). Tryptic peptide mapping showed that the CpcSU-dependent reaction product had one major PCB-containing peptide that contained the PCB binding site Cys-82. The CpcSU lyase was also tested with recombinant apoHT-allophycocyanin (aporHT-AP) and PCB in vitro. AporHT-AP formed an ApcA/ApcB heterodimer with an apparent mass of ∼27 kDa. When aporHT-AP was incubated with PCB and CpcSU, the product had an absorbance maximum of 614 nm and a fluorescence emission maximum at 636 nm, the expected maxima for monomeric holo-AP. When no enzyme or CpcS-I or CpcU was added alone, the products had absorbance maxima between 645 and 647 nm and were not fluorescent. When these reaction products were analyzed by gel electrophoresis and zinc-enhanced fluorescence emission, only the reaction products from CpcSU had PCB attached to both AP subunits. Therefore, CpcSU is the bilin lyase-responsible for attachment of PCB to Cys-82 of CpcB and Cys-81 of ApcA and ApcB.

[1]  R. Huber,et al.  Crystal structure analysis and refinement at 2.5 A of hexameric C-phycocyanin from the cyanobacterium Agmenellum quadruplicatum. The molecular model and its implications for light-harvesting. , 1986, Journal of molecular biology.

[2]  H. Scheer,et al.  Nonenzymatic chromophore attachment in biliproteins: conformational control by the detergent Triton X-100. , 2004, Biochimica et biophysica acta.

[3]  D. Bryant,et al.  Spectroscopic studies of phycobilisome subcore preparations lacking key core chromophores : assignment of excited state energies to the Lcm, β18 and αAP-B chromophores , 1994 .

[4]  Martin P. Debreczeny,et al.  Monomeric C-phycocyanin at room temperature and 77 K: resolution of the absorption and fluorescence spectra of the individual chromophores and the energy-transfer rate constants , 1993 .

[5]  A. Glazer,et al.  Candidate genes for the phycoerythrocyanin alpha subunit lyase. Biochemical analysis of pecE and pecF interposon mutants. , 1995, The Journal of biological chemistry.

[6]  A. C. Clark,et al.  CpeR is an activator required for expression of the phycoerythrin operon (cpeBA) in the cyanobacterium Fremyella diplosiphon and is encoded in the phycoerythrin linker‐polypeptide operon (cpeCDESTR) , 2002, Molecular microbiology.

[7]  R. Huber,et al.  Refined three-dimensional structures of two cyanobacterial C-phycocyanins at 2.1 and 2.5 A resolution. A common principle of phycobilin-protein interaction. , 1987, Journal of molecular biology.

[8]  Hong Li,et al.  Characterization of Synechocystis sp. strain PCC 6803 and Δnbl mutants under nitrogen-deficient conditions , 2002, Archives of Microbiology.

[9]  A. Glazer,et al.  Oligomeric structure, enzyme kinetics, and substrate specificity of the phycocyanin alpha subunit phycocyanobilin lyase. , 1994, The Journal of biological chemistry.

[10]  Ming Zhou,et al.  Phycobilin:cystein-84 biliprotein lyase, a near-universal lyase for cysteine-84-binding sites in cyanobacterial phycobiliproteins , 2007, Proceedings of the National Academy of Sciences.

[11]  L. Bogorad,et al.  The Photosynthetic Apparatus: Molecular Biology and Operation , 1991 .

[12]  S. Steinbacher,et al.  Isolation, crystallization, crystal structure analysis and refinement of allophycocyanin from the cyanobacterium Spirulina platensis at 2.3 A resolution. , 1995, Journal of molecular biology.

[13]  P. Su,et al.  Chromophore attachment to phycobiliprotein beta-subunits: phycocyanobilin:cysteine-beta84 phycobiliprotein lyase activity of CpeS-like protein from Anabaena Sp. PCC7120. , 2006, The Journal of biological chemistry.

[14]  W. Sidler,et al.  Phycobilisome and Phycobiliprotein Structures , 1994 .

[15]  Arthur R. Grossman,et al.  A Polypeptide with Similarity to Phycocyanin α-Subunit Phycocyanobilin Lyase Involved in Degradation of Phycobilisomes , 1999, Journal of bacteriology.

[16]  A. Glazer,et al.  In vitro attachment of bilins to apophycocyanin. I. Specific covalent adduct formation at cysteinyl residues involved in phycocyanobilin binding in C-phycocyanin. , 1988, The Journal of biological chemistry.

[17]  M. Zhou,et al.  Novel activity of a phycobiliprotein lyase: both the attachment of phycocyanobilin and the isomerization to phycoviolobilin are catalyzed by the proteins PecE and PecF encoded by the phycoerythrocyanin operon , 2000, FEBS letters.

[18]  A. Glazer,et al.  Chromophore content of blue-green algal phycobiliproteins. , 1973, The Journal of biological chemistry.

[19]  D. Bryant,et al.  Identification and Characterization of a New Class of Bilin Lyase , 2006, Journal of Biological Chemistry.

[20]  R. Huber,et al.  Structural analysis at 2.2 A of orthorhombic crystals presents the asymmetry of the allophycocyanin-linker complex, AP.LC7.8, from phycobilisomes of Mastigocladus laminosus. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[21]  J. Lagarias,et al.  Phycocyanobilin:Ferredoxin Oxidoreductase ofAnabaena sp. PCC 7120 , 2003, The Journal of Biological Chemistry.

[22]  K. Sauer,et al.  Energy-transfer and exciton-state relaxation processes in allophycocyanin , 1992 .

[23]  D. Bryant,et al.  Structural and compositional analyses of the phycobilisomes of Synechococcus sp. PCC 7002. Analyses of the wild-type strain and a phycocyanin-less mutant constructed by interposon mutagenesis , 2004, Archives of Microbiology.

[24]  T. Kohchi,et al.  Functional Genomic Analysis of the HY2 Family of Ferredoxin-Dependent Bilin Reductases from Oxygenic Photosynthetic Organisms , 2001, Plant Cell.

[25]  T. Kohchi,et al.  The Arabidopsis HY2 Gene Encodes Phytochromobilin Synthase, a Ferredoxin-Dependent Biliverdin Reductase , 2001, Plant Cell.

[26]  H. Scheer,et al.  FÖRSTER TRANSFER CALCULATIONS BASED ON CRYSTAL STRUCTURE DATA FROM Agmenellum quadruplicatum C‐PHYCOCYANIN , 1987 .

[27]  Crystal A. Miller Identification and Characterization of Enzymes Involved in Post-translational Modifications of Phycobiliproteins in the Cyanobacterium Synechocystis sp. PCC 6803 , 2007 .

[28]  D. Bryant,et al.  Interaction of ferredoxin:NADP+ oxidoreductase with phycobilisomes and phycobilisome substructures of the cyanobacterium Synechococcus sp. strain PCC 7002. , 2003, Biochemistry.

[29]  A. Glazer,et al.  Phycocyanin alpha-subunit phycocyanobilin lyase. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[30]  D. Mazel,et al.  A role for cpeYZ in cyanobacterial phycoerythrin biosynthesis , 1997, Journal of bacteriology.

[31]  M. Mimuro,et al.  Functional assignment of chromophores and energy transfer in C phycocyanin isolated from the thermophilic cyanobacterium Mastigocladus laminosus , 1986 .

[32]  D. Bryant,et al.  Genes for the alpha and beta subunits of phycocyanin. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[33]  D. Bryant The Molecular Biology of Cyanobacteria , 1994, Advances in Photosynthesis.

[34]  Ming Zhou,et al.  Amino acid residues associated with enzymatic activities of the isomerizing phycoviolobilin-lyase PecE/F. , 2005, Biochemistry.

[35]  D. Bryant,et al.  Biogenesis of Phycobiliproteins , 2008, Journal of Biological Chemistry.

[36]  P. Su,et al.  Reconstitution of phycobilisome core-membrane linker, LCM, by autocatalytic chromophore binding to ApcE. , 2005, Biochimica et biophysica acta.

[37]  P. Lyu,et al.  Biosynthesis of fluorescent allophycocyanin alpha-subunits by autocatalytic bilin attachment. , 2006, Biochemistry.

[38]  D. Bryant,et al.  Light-energy transduction in photosynthesis: higher plant and bacterial models. , 1988 .

[39]  D. Bryant,et al.  Core mutations of Synechococcus sp. PCC 7002 phycobilisomes: a spectroscopic study. , 1992, Journal of photochemistry and photobiology. B, Biology.

[40]  M. Vincent,et al.  Polarized absorption and fluorescence spectra of single crystals of C-phycocyanin , 1987 .

[41]  V. Capuano,et al.  The "anchor polypeptide" of cyanobacterial phycobilisomes. Molecular characterization of the Synechococcus sp. PCC 6301 apce gene. , 1991, The Journal of biological chemistry.

[42]  A. Glazer,et al.  Characterization of phycocyanin produced by cpcE and cpcF mutants and identification of an intergenic suppressor of the defect in bilin attachment. , 1992, The Journal of biological chemistry.

[43]  D. Bryant,et al.  Genetic analysis of a 9 kDa phycocyanin-associated linker polypeptide. , 1990, Biochimica et biophysica acta.

[44]  D. Bryant,et al.  Molecular characterization of ferredoxin-NADP+ oxidoreductase in cyanobacteria: cloning and sequence of the petH gene of Synechococcus sp. PCC 7002 and studies on the gene product. , 1992, Biochemistry.

[45]  D. Bryant,et al.  The cpcE and cpcF genes of Synechococcus sp. PCC 7002. Construction and phenotypic characterization of interposon mutants. , 1992, The Journal of biological chemistry.

[46]  A. Glazer,et al.  Light guides. Directional energy transfer in a photosynthetic antenna. , 1989, The Journal of biological chemistry.

[47]  D. Bryant,et al.  Structure and mutation of a gene encoding a Mr 33000 phycocyanin-associated linker polypeptide , 2004, Archives of Microbiology.