A two-stage method for O-glycosylation site prediction
暂无分享,去创建一个
Jing-Yuan Yin | Zhanming Liu | Juan Ding | Ryan M. O’Donnell | Wencong Lu | Bing Niu | Yubei Zhu | Chunrong Peng | Wencong Lu | C. Peng | B. Niu | Zhanming Liu | Juan Ding | Jing-Yuan Yin | Yubei Zhu | Ryan O’Donnell
[1] O. Lund,et al. Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase. , 1995, The Biochemical journal.
[2] Hiroyuki Ogata,et al. AAindex: Amino Acid Index Database , 1999, Nucleic Acids Res..
[3] Kuo-Chen Chou,et al. Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition. , 2006, Journal of theoretical biology.
[4] J. Wieruszeski,et al. The Glycan Moiety of Human Pancreatic Lithostathine , 1995 .
[5] Kuo-Chen Chou,et al. Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor , 2006, J. Comput. Chem..
[6] David P. Helmbold,et al. A geometric approach to leveraging weak learners , 2002, Theor. Comput. Sci..
[7] Yoav Freund,et al. A decision-theoretic generalization of on-line learning and an application to boosting , 1997, EuroCOLT.
[8] Kuo-Chen Chou,et al. Computational methods for protein-protein interaction and their application. , 2005, Current protein & peptide science.
[9] D Haussler,et al. Knowledge-based analysis of microarray gene expression data by using support vector machines. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[10] Kuo-Chen Chou,et al. Peptide reagent design based on physical and chemical properties of amino acid residues , 2007, J. Comput. Chem..
[11] K. Chou,et al. A sequence‐coupled vector‐projection model for predicting the specificity of GalNAc‐transferase , 1995, Protein science : a publication of the Protein Society.
[12] L. K. Rasmussen,et al. The primary structure of caprine PP3: amino acid sequence, phosphorylation, and glycosylation of component PP3 from the proteose-peptone fraction of caprine milk. , 1998, Journal of dairy science.
[13] L. Tabak,et al. Isoform-specific O-glycosylation by murine UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-T3, in vivo. , 1998, Glycobiology.
[14] Kuo-Chen Chou,et al. Heuristic molecular lipophilicity potential (HMLP): A 2D‐QSAR study to LADH of molecular family pyrazole and derivatives , 2005, J. Comput. Chem..
[15] Richard E. Korf,et al. Best-First Minimax Search , 1996, Artif. Intell..
[16] R. Poorman,et al. The specificity of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase as inferred from a database of in vivo substrates and from the in vitro glycosylation of proteins and peptides. , 1993, The Journal of biological chemistry.
[17] Lin Lu,et al. Prediction of interaction between small molecule and enzyme using AdaBoost , 2009, Molecular Diversity.
[18] Kuo-Chen Chou,et al. Using supervised fuzzy clustering to predict protein structural classes. , 2005, Biochemical and biophysical research communications.
[19] James A. Mackintosh,et al. Isolation from an Ant Myrmecia gulosa of Two Inducible O-Glycosylated Proline-rich Antibacterial Peptides* , 1998, The Journal of Biological Chemistry.
[20] K. Chou,et al. Artificial Neural Network Method for Predicting the Specificity of GalNAc-transferase , 1997, Journal of protein chemistry.
[21] S. Brunak,et al. Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. , 2005, Glycobiology.
[22] Guo-Zheng Li,et al. Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins , 2008, Molecular Diversity.
[23] David E. Goldberg,et al. Genetic Algorithms in Search Optimization and Machine Learning , 1988 .
[24] Kuo-Chen Chou,et al. Methodology development for predicting subcellular localization and other attributes of proteins , 2007, Expert review of proteomics.
[25] K. Chou,et al. A vector projection method for predicting the specificity of GalNAc‐transferase , 1995, Proteins.
[26] Wencong Lu,et al. Predicting toxic action mechanisms of phenols using AdaBoost Learner , 2009 .
[27] Enrique Romero,et al. Margin maximization with feed-forward neural networks: a comparative study with SVM and AdaBoost , 2004, Neurocomputing.
[28] H. Klenk,et al. Molecular characterization of gp40, a mucin-type glycoprotein from the apical plasma membrane of Madin-Darby canine kidney cells (type I). , 1997, The Biochemical journal.
[29] Lloyd A. Smith,et al. Practical feature subset selection for machine learning , 1998 .
[30] Nathan Sharon,et al. Glycoproteins: research booming on long-ignored, ubiquitous compounds , 1981 .
[31] Ron Kohavi,et al. Wrappers for Feature Subset Selection , 1997, Artif. Intell..
[32] M. Kurimoto,et al. O-glycosylated species of natural human tumor-necrosis factor-alpha. , 1996, European journal of biochemistry.
[33] Dapeng Li,et al. Heuristic molecular lipophilicity potential (HMLP): Lipophilicity and hydrophilicity of amino acid side chains , 2006, J. Comput. Chem..
[34] L. Tabak,et al. Separation of glycopeptides from in vitro O-glycosylation reactions using C18 cartridges. , 1993, Analytical biochemistry.
[35] Kuo-Chen Chou,et al. Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition. , 2005, Biochemical and biophysical research communications.
[36] Minoru Kanehisa,et al. PLOC: Prediction of Subcellular Location of Proteins , 2003 .
[37] Kuo-Chen Chou,et al. Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types. , 2005, Biochemical and biophysical research communications.
[38] G. Hart,et al. Nuclear and cytoplasmic glycosylation: novel saccharide linkages in unexpected places. , 1988, Trends in biochemical sciences.
[39] John L. Rhodes,et al. Algebraic Principles for the Analysis of a Biochemical System , 1967, J. Comput. Syst. Sci..
[40] K. Chou,et al. Knowledge-based model building of the tertiary structures for lectin domains of the selectin family , 1996, Journal of protein chemistry.
[41] Kuo-Chen Chou,et al. Predicting protein structural class with AdaBoost Learner. , 2006, Protein and peptide letters.
[42] A. Varki,et al. Biological roles of oligosaccharides: all of the theories are correct , 1993, Glycobiology.
[43] K C Chou,et al. Artificial neural network model for predicting the specificity of GalNAc-transferase. , 1996, Analytical biochemistry.
[44] J. Wieruszeski,et al. The glycan moiety of human pancreatic lithostathine. Structure characterization and possible pathophysiological implications. , 1995, European journal of biochemistry.
[45] Fuhui Long,et al. Feature selection based on mutual information criteria of max-dependency, max-relevance, and min-redundancy , 2003, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[46] Kuo-Chen Chou,et al. Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. , 2007, Protein and peptide letters.
[47] Lin Lu,et al. HIV‐1 protease cleavage site prediction based on amino acid property , 2009, J. Comput. Chem..
[48] L. Tabak,et al. Charge distribution of flanking amino acids inhibits O-glycosylation of several single-site acceptors in vivo. , 1997, Glycobiology.
[49] K. Chou. A novel approach to predicting protein structural classes in a (20–1)‐D amino acid composition space , 1995, Proteins.
[50] M. Kanehisa,et al. Cluster analysis of amino acid indices for prediction of protein structure and function. , 1988, Protein engineering.
[51] K. Chou,et al. PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition. , 2008, Analytical biochemistry.
[52] H.-B. Shen,et al. Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction , 2007, Amino Acids.
[53] H. Ikenaga,et al. Discovery of the Shortest Sequence Motif for High Level Mucin-type O-Glycosylation* , 1997, The Journal of Biological Chemistry.
[54] Ron Kohavi,et al. Irrelevant Features and the Subset Selection Problem , 1994, ICML.
[55] E. Hounsell,et al. O-linked protein glycosylation structure and function , 1996, Glycoconjugate Journal.
[56] L. Tabak,et al. The influence of flanking sequence on the O-glycosylation of threonine in vitro. , 1992, The Journal of biological chemistry.
[57] K. Chou,et al. Support vector machines for predicting the specificity of GalNAc-transferase , 2002, Peptides.